CX296701
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS_TOBAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana tabacum GN=RBCS PE=1 SV=1) HSP 1 Score: 241.121 bits (614), Expect = 1.930e-68 Identity = 108/150 (72.00%), Postives = 128/150 (85.33%), Query Frame = 1 Query: 139 KSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 588 KS+++FP ++K N DITSIASNGGRVQCM+VWPP KK+ETLSYLP LS E LL E+ YLL++GW+PCLEFE E G+VYRE++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISF+A KP G Sbjct: 30 KSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179 HSP 2 Score: 38.1206 bits (87), Expect = 1.930e-68 Identity = 20/30 (66.67%), Postives = 26/30 (86.67%), Query Frame = 2 Query: 47 MASSMISSTTVATANRASLAQASMVAPFTG 136 MASS++SS VAT R+++AQA+MVAPFTG Sbjct: 1 MASSVLSSAAVAT--RSNVAQANMVAPFTG 28
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS1_NICSY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana sylvestris GN=RBCS PE=2 SV=1) HSP 1 Score: 241.121 bits (614), Expect = 1.930e-68 Identity = 108/150 (72.00%), Postives = 128/150 (85.33%), Query Frame = 1 Query: 139 KSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 588 KS+++FP ++K N DITSIASNGGRVQCM+VWPP KK+ETLSYLP LS E LL E+ YLL++GW+PCLEFE E G+VYRE++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISF+A KP G Sbjct: 30 KSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179 HSP 2 Score: 38.1206 bits (87), Expect = 1.930e-68 Identity = 20/30 (66.67%), Postives = 26/30 (86.67%), Query Frame = 2 Query: 47 MASSMISSTTVATANRASLAQASMVAPFTG 136 MASS++SS VAT R+++AQA+MVAPFTG Sbjct: 1 MASSVLSSAAVAT--RSNVAQANMVAPFTG 28
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS_STELP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Stellaria longipes GN=RBCS PE=2 SV=1) HSP 1 Score: 241.891 bits (616), Expect = 2.517e-68 Identity = 109/148 (73.65%), Postives = 127/148 (85.81%), Query Frame = 1 Query: 139 KSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 582 KS+++FP ++KTN DITSIASNGGRV+CM+VWPP +KK+ETLSYLP LS E LL EI YLL++GW+PCLEFE E G+VYREH SSPGYYDGRYWTMWKLPM+GCTDATQV EV E +K YP + +RIIGFDN RQVQCISF+A KP Sbjct: 30 KSNASFPVSRKTNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLSSEQLLSEIEYLLKNGWVPCLEFETEHGFVYREHTSSPGYYDGRYWTMWKLPMFGCTDATQVAAEVQEAKKAYPDAHIRIIGFDNVRQVQCISFIAYKP 177 HSP 2 Score: 36.965 bits (84), Expect = 2.517e-68 Identity = 21/30 (70.00%), Postives = 25/30 (83.33%), Query Frame = 2 Query: 47 MASSMISSTTVATANRASLAQASMVAPFTG 136 MASS++SS VAT R++ AQASMVAPFTG Sbjct: 1 MASSIMSSAAVAT--RSNGAQASMVAPFTG 28
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS_CAPAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1) HSP 1 Score: 245.743 bits (626), Expect = 3.281e-68 Identity = 111/148 (75.00%), Postives = 127/148 (85.81%), Query Frame = 1 Query: 139 KSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 582 KS+++FP T+K + DITSIASNGGRV+CM VWPP KK+ETLSYLP LSDE LLKEI YLL+ GW+PCLEFE E G+VYREHH SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISF+A KP Sbjct: 30 KSAASFPVTRKQDLDITSIASNGGRVECMLVWPPINKKKYETLSYLPDLSDEQLLKEIEYLLQKGWVPCLEFETEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDATQVLNEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177 HSP 2 Score: 32.7278 bits (73), Expect = 3.281e-68 Identity = 18/30 (60.00%), Postives = 23/30 (76.67%), Query Frame = 2 Query: 47 MASSMISSTTVATANRASLAQASMVAPFTG 136 MASS++S+ TVAT A+ AQASM+A F G Sbjct: 1 MASSVMSTATVATG--ANAAQASMIASFNG 28
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS4_MESCR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-4 PE=2 SV=1) HSP 1 Score: 246.128 bits (627), Expect = 4.279e-68 Identity = 110/153 (71.90%), Postives = 132/153 (86.27%), Query Frame = 1 Query: 124 PLHRPKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 582 P + KS SAFP T+K NNDITS+ASNGGRVQCM+VWPP G+KKFETLSYLPPLS+E+LLKE+ YLL +GW+PCLEFE G+VYREH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQC+SF+A KP Sbjct: 27 PFNGLKSISAFPVTRK-NNDITSVASNGGRVQCMQVWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 178 HSP 2 Score: 31.9574 bits (71), Expect = 4.279e-68 Identity = 15/30 (50.00%), Postives = 20/30 (66.67%), Query Frame = 2 Query: 47 MASSMISSTTVATANRASLAQASMVAPFTG 136 MASS++S+ A + AQA+MVAPF G Sbjct: 1 MASSLMSNAATTMAAATTTAQANMVAPFNG 30
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS3_AMAHP (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS3 PE=2 SV=1) HSP 1 Score: 247.284 bits (630), Expect = 7.278e-68 Identity = 113/155 (72.90%), Postives = 130/155 (83.87%), Query Frame = 1 Query: 124 PLHRPKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 588 P + KS ++FP T+K+N DITSIASNGGRVQCM+VWPP G KKFETLSYLPPLSD LL ++ YLL +GWIPC+EFELE +VYRE+H SPGY DGRYWTMWKLPMYGCTD QVL EV E +K YP +F+RIIGFDNKRQVQC+SF+A KPPG Sbjct: 26 PFNGLKSIASFPVTRKSN-DITSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNNGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIAFKPPG 179 HSP 2 Score: 30.0314 bits (66), Expect = 7.278e-68 Identity = 17/30 (56.67%), Postives = 21/30 (70.00%), Query Frame = 2 Query: 47 MASSMISSTTVATANRASLAQASMVAPFTG 136 MASS++S+ A AS AQA+MVAPF G Sbjct: 1 MASSLMSNAITAVVG-ASGAQANMVAPFNG 29
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS3_MESCR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-3 PE=2 SV=1) HSP 1 Score: 244.202 bits (622), Expect = 1.614e-67 Identity = 110/153 (71.90%), Postives = 131/153 (85.62%), Query Frame = 1 Query: 124 PLHRPKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 582 P + KS SAFP T+K NNDITS+ASNGGRVQCM+VWPP G KKFETLSYLPPLS+E+L+KE+ YLL +GW+PCLEFE G+VYREH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQCISF+A KP Sbjct: 27 PFNGLKSVSAFPVTRK-NNDITSVASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFIAYKP 178 HSP 2 Score: 31.9574 bits (71), Expect = 1.614e-67 Identity = 15/30 (50.00%), Postives = 20/30 (66.67%), Query Frame = 2 Query: 47 MASSMISSTTVATANRASLAQASMVAPFTG 136 MASS++S+ A + AQA+MVAPF G Sbjct: 1 MASSLMSNAATTMAAATTTAQANMVAPFNG 30
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1) HSP 1 Score: 254.603 bits (649), Expect = 3.993e-67 Identity = 119/163 (73.01%), Postives = 135/163 (82.82%), Query Frame = 1 Query: 100 PCSGQHGRPLHRPKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 588 P + P KSSSA P T+K+N DITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E+L KE+ YLLR W+PCLEFELE G+VYRE+H SPGYYDGRYWTMWKLPM+GCTD++QVLKE+ E +K YP SF+RIIGFDN RQVQCISF+A KP G Sbjct: 21 PAQARMVAPFTGLKSSSASPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPAG 182
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS2_AMAHP (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS2 PE=2 SV=1) HSP 1 Score: 241.506 bits (615), Expect = 7.936e-67 Identity = 111/153 (72.55%), Postives = 127/153 (83.01%), Query Frame = 1 Query: 124 PLHRPKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 582 P + KS ++FP T+K+N DITSIASNGGRVQCM+VWPP G KKFETLSYLPPLSD LL ++ YLL GWIPC+EFELE +VYRE+H SPGY DGRYWTMWKLPMYGCTD QVL EV E +K YP +F+RIIGFDNKRQVQC+SF+A KP Sbjct: 29 PFNGLKSIASFPVTRKSN-DITSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPTAFIRIIGFDNKRQVQCVSFIAYKP 180 HSP 2 Score: 32.3426 bits (72), Expect = 7.936e-67 Identity = 19/32 (59.38%), Postives = 23/32 (71.88%), Query Frame = 2 Query: 47 MASSMISS--TTVATANRASLAQASMVAPFTG 136 MASSM+S+ T VA A + AQA+MVAPF G Sbjct: 1 MASSMMSNAATAVAVAATSGGAQANMVAPFNG 32
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS2_NICSY (Ribulose bisphosphate carboxylase small chain S41, chloroplastic OS=Nicotiana sylvestris PE=3 SV=1) HSP 1 Score: 242.662 bits (618), Expect = 7.937e-67 Identity = 108/150 (72.00%), Postives = 130/150 (86.67%), Query Frame = 1 Query: 139 KSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 588 KS+++FP ++K N DITSIASNGGRVQCM+VWPP KK+ETLSYLP LS+E LL+E+ YLL++GW+PCLEFE E G+VYRE++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISF+A KP G Sbjct: 31 KSATSFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSEEQLLREVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180 HSP 2 Score: 31.187 bits (69), Expect = 7.937e-67 Identity = 14/26 (53.85%), Postives = 18/26 (69.23%), Query Frame = 2 Query: 59 MISSTTVATANRASLAQASMVAPFTG 136 +I S+ A A + AQASM+APFTG Sbjct: 4 LIMSSAAAVATGTNAAQASMIAPFTG 29 The following BLAST results are available for this feature:
BLAST of CX296701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 127
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296701 ID=CX296701; Name=CX296701; organism=Citrus clementina; type=EST; length=729bpback to top |