CX296701

Overview
NameCX296701
Unique NameCX296701
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9879 contig Ccv1_Contig9879:1..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS_TOBAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana tabacum GN=RBCS PE=1 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 1.930e-68
Identity = 108/150 (72.00%), Postives = 128/150 (85.33%), Query Frame = 1
Query:  139 KSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 588
            KS+++FP ++K N DITSIASNGGRVQCM+VWPP   KK+ETLSYLP LS E LL E+ YLL++GW+PCLEFE E G+VYRE++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISF+A KP G
Sbjct:   30 KSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179          

HSP 2 Score: 38.1206 bits (87), Expect = 1.930e-68
Identity = 20/30 (66.67%), Postives = 26/30 (86.67%), Query Frame = 2
Query:   47 MASSMISSTTVATANRASLAQASMVAPFTG 136
            MASS++SS  VAT  R+++AQA+MVAPFTG
Sbjct:    1 MASSVLSSAAVAT--RSNVAQANMVAPFTG 28          
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS1_NICSY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana sylvestris GN=RBCS PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 1.930e-68
Identity = 108/150 (72.00%), Postives = 128/150 (85.33%), Query Frame = 1
Query:  139 KSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 588
            KS+++FP ++K N DITSIASNGGRVQCM+VWPP   KK+ETLSYLP LS E LL E+ YLL++GW+PCLEFE E G+VYRE++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISF+A KP G
Sbjct:   30 KSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179          

HSP 2 Score: 38.1206 bits (87), Expect = 1.930e-68
Identity = 20/30 (66.67%), Postives = 26/30 (86.67%), Query Frame = 2
Query:   47 MASSMISSTTVATANRASLAQASMVAPFTG 136
            MASS++SS  VAT  R+++AQA+MVAPFTG
Sbjct:    1 MASSVLSSAAVAT--RSNVAQANMVAPFTG 28          
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS_STELP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Stellaria longipes GN=RBCS PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.517e-68
Identity = 109/148 (73.65%), Postives = 127/148 (85.81%), Query Frame = 1
Query:  139 KSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 582
            KS+++FP ++KTN DITSIASNGGRV+CM+VWPP  +KK+ETLSYLP LS E LL EI YLL++GW+PCLEFE E G+VYREH SSPGYYDGRYWTMWKLPM+GCTDATQV  EV E +K YP + +RIIGFDN RQVQCISF+A KP
Sbjct:   30 KSNASFPVSRKTNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLSSEQLLSEIEYLLKNGWVPCLEFETEHGFVYREHTSSPGYYDGRYWTMWKLPMFGCTDATQVAAEVQEAKKAYPDAHIRIIGFDNVRQVQCISFIAYKP 177          

HSP 2 Score: 36.965 bits (84), Expect = 2.517e-68
Identity = 21/30 (70.00%), Postives = 25/30 (83.33%), Query Frame = 2
Query:   47 MASSMISSTTVATANRASLAQASMVAPFTG 136
            MASS++SS  VAT  R++ AQASMVAPFTG
Sbjct:    1 MASSIMSSAAVAT--RSNGAQASMVAPFTG 28          
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS_CAPAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 3.281e-68
Identity = 111/148 (75.00%), Postives = 127/148 (85.81%), Query Frame = 1
Query:  139 KSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 582
            KS+++FP T+K + DITSIASNGGRV+CM VWPP   KK+ETLSYLP LSDE LLKEI YLL+ GW+PCLEFE E G+VYREHH SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISF+A KP
Sbjct:   30 KSAASFPVTRKQDLDITSIASNGGRVECMLVWPPINKKKYETLSYLPDLSDEQLLKEIEYLLQKGWVPCLEFETEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDATQVLNEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177          

HSP 2 Score: 32.7278 bits (73), Expect = 3.281e-68
Identity = 18/30 (60.00%), Postives = 23/30 (76.67%), Query Frame = 2
Query:   47 MASSMISSTTVATANRASLAQASMVAPFTG 136
            MASS++S+ TVAT   A+ AQASM+A F G
Sbjct:    1 MASSVMSTATVATG--ANAAQASMIASFNG 28          
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS4_MESCR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 4.279e-68
Identity = 110/153 (71.90%), Postives = 132/153 (86.27%), Query Frame = 1
Query:  124 PLHRPKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 582
            P +  KS SAFP T+K NNDITS+ASNGGRVQCM+VWPP G+KKFETLSYLPPLS+E+LLKE+ YLL +GW+PCLEFE   G+VYREH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQC+SF+A KP
Sbjct:   27 PFNGLKSISAFPVTRK-NNDITSVASNGGRVQCMQVWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 178          

HSP 2 Score: 31.9574 bits (71), Expect = 4.279e-68
Identity = 15/30 (50.00%), Postives = 20/30 (66.67%), Query Frame = 2
Query:   47 MASSMISSTTVATANRASLAQASMVAPFTG 136
            MASS++S+     A   + AQA+MVAPF G
Sbjct:    1 MASSLMSNAATTMAAATTTAQANMVAPFNG 30          
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS3_AMAHP (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 7.278e-68
Identity = 113/155 (72.90%), Postives = 130/155 (83.87%), Query Frame = 1
Query:  124 PLHRPKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 588
            P +  KS ++FP T+K+N DITSIASNGGRVQCM+VWPP G KKFETLSYLPPLSD  LL ++ YLL +GWIPC+EFELE  +VYRE+H SPGY DGRYWTMWKLPMYGCTD  QVL EV E +K YP +F+RIIGFDNKRQVQC+SF+A KPPG
Sbjct:   26 PFNGLKSIASFPVTRKSN-DITSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNNGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIAFKPPG 179          

HSP 2 Score: 30.0314 bits (66), Expect = 7.278e-68
Identity = 17/30 (56.67%), Postives = 21/30 (70.00%), Query Frame = 2
Query:   47 MASSMISSTTVATANRASLAQASMVAPFTG 136
            MASS++S+   A    AS AQA+MVAPF G
Sbjct:    1 MASSLMSNAITAVVG-ASGAQANMVAPFNG 29          
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS3_MESCR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 1.614e-67
Identity = 110/153 (71.90%), Postives = 131/153 (85.62%), Query Frame = 1
Query:  124 PLHRPKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 582
            P +  KS SAFP T+K NNDITS+ASNGGRVQCM+VWPP G KKFETLSYLPPLS+E+L+KE+ YLL +GW+PCLEFE   G+VYREH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQCISF+A KP
Sbjct:   27 PFNGLKSVSAFPVTRK-NNDITSVASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFIAYKP 178          

HSP 2 Score: 31.9574 bits (71), Expect = 1.614e-67
Identity = 15/30 (50.00%), Postives = 20/30 (66.67%), Query Frame = 2
Query:   47 MASSMISSTTVATANRASLAQASMVAPFTG 136
            MASS++S+     A   + AQA+MVAPF G
Sbjct:    1 MASSLMSNAATTMAAATTTAQANMVAPFNG 30          
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 3.993e-67
Identity = 119/163 (73.01%), Postives = 135/163 (82.82%), Query Frame = 1
Query:  100 PCSGQHGRPLHRPKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 588
            P   +   P    KSSSA P T+K+N DITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E+L KE+ YLLR  W+PCLEFELE G+VYRE+H SPGYYDGRYWTMWKLPM+GCTD++QVLKE+ E +K YP SF+RIIGFDN RQVQCISF+A KP G
Sbjct:   21 PAQARMVAPFTGLKSSSASPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPAG 182          
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS2_AMAHP (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 7.936e-67
Identity = 111/153 (72.55%), Postives = 127/153 (83.01%), Query Frame = 1
Query:  124 PLHRPKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 582
            P +  KS ++FP T+K+N DITSIASNGGRVQCM+VWPP G KKFETLSYLPPLSD  LL ++ YLL  GWIPC+EFELE  +VYRE+H SPGY DGRYWTMWKLPMYGCTD  QVL EV E +K YP +F+RIIGFDNKRQVQC+SF+A KP
Sbjct:   29 PFNGLKSIASFPVTRKSN-DITSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPTAFIRIIGFDNKRQVQCVSFIAYKP 180          

HSP 2 Score: 32.3426 bits (72), Expect = 7.936e-67
Identity = 19/32 (59.38%), Postives = 23/32 (71.88%), Query Frame = 2
Query:   47 MASSMISS--TTVATANRASLAQASMVAPFTG 136
            MASSM+S+  T VA A  +  AQA+MVAPF G
Sbjct:    1 MASSMMSNAATAVAVAATSGGAQANMVAPFNG 32          
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS2_NICSY (Ribulose bisphosphate carboxylase small chain S41, chloroplastic OS=Nicotiana sylvestris PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 7.937e-67
Identity = 108/150 (72.00%), Postives = 130/150 (86.67%), Query Frame = 1
Query:  139 KSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 588
            KS+++FP ++K N DITSIASNGGRVQCM+VWPP   KK+ETLSYLP LS+E LL+E+ YLL++GW+PCLEFE E G+VYRE++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISF+A KP G
Sbjct:   31 KSATSFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSEEQLLREVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          

HSP 2 Score: 31.187 bits (69), Expect = 7.937e-67
Identity = 14/26 (53.85%), Postives = 18/26 (69.23%), Query Frame = 2
Query:   59 MISSTTVATANRASLAQASMVAPFTG 136
            +I S+  A A   + AQASM+APFTG
Sbjct:    4 LIMSSAAAVATGTNAAQASMIAPFTG 29          
The following BLAST results are available for this feature:
BLAST of CX296701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
RBS_TOBAC1.930e-6872.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_NICSY1.930e-6872.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_STELP2.517e-6873.65Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_CAPAN3.281e-6875.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS4_MESCR4.279e-6871.90Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS3_AMAHP7.278e-6872.90Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS3_MESCR1.614e-6771.90Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS_MALSP3.993e-6773.01Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_AMAHP7.936e-6772.55Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS2_NICSY7.937e-6772.00Ribulose bisphosphate carboxylase small chain S41,... [more]

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Properties
Property NameValue
Genbank descriptionC05801H01SK FerrChloL1 Citrus clementina cDNA clone C05801H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296701 ID=CX296701; Name=CX296701; organism=Citrus clementina; type=EST; length=729bp
GAGGCCTCGCTGCCGAATTCGGCACGAGGAGAAGGAGCAAGTACCAATGG
CTTCCTCAATGATCTCATCGACCACCGTTGCCACCGCGAACCGCGCCAGC
CTTGCTCAGGCCAGCATGGTCGCCCCCTTCACCGGCCCAAGTCTTCTTCT
GCTTTCCCAGCAACCAAGAAGACCAACAATGACATTACTTCCATTGCAAG
CAACGGCGGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTGGCTTGA
AGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGCTTTG
CTCAAGGAAATCAGTTACCTTCTCCGCTCCGGCTGGATTCCCTGCTTGGA
ATTCGAGTTGGAGAAAGGATGGGTGTACCGTGAGCACCACAGCTCACCAG
GATACTACGATGGACGCTACTGGACAATGTGGAAGCTGCCCATGTATGGG
TGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGGGAGGTCCAGAAGGA
ATACCCACATTCATTCGTCCGAATTATCGGATTTGACAACAAGCGTCAAG
TGCAGTGCATCAGTTTCCTTGCTGCCAAGCCACCAGGCGTCTAGGTTCCC
AATTAAATTTGTGTAACCACCCATGCAATATTGTTGATTATTATTATGTG
TAACCCCCATAATGATCATTCGATCAATGGGGGTTCGGTTTGCGTTTAAT
TTGTACTTAGGCTGCTGTTGCTGCTGCTC
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