CX296701

Overview
NameCX296701
Unique NameCX296701
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS2_CHLRE (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-2 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.434e-32
Identity = 73/157 (46.50%), Postives = 95/157 (60.51%), Query Frame = 1
Query:  133 RPKSSSAFP-ATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEF-ELEKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 582
            RP  SS  P A  K       +A+     Q M VW P   K FET SYLPPLSDE +  ++ Y++ +GWIPCLEF E +K +V  E     G     YYD RYWTMWKLPM+GC D  QVL+E+    K +P ++VR++ FDN++QVQ + FL  +P
Sbjct:   16 RPARSSVRPMAALKPAVKAAPVAAPAQANQMM-VWTPVNNKMFETFSYLPPLSDEQIAAQVDYIVANGWIPCLEFAESDKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRP 171          
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS_SINAL (Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.872e-32
Identity = 60/77 (77.92%), Postives = 70/77 (90.91%), Query Frame = 1
Query:  355 ELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 585
            ELE G+VYREH S+PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP++F+RIIGFDN RQVQCISF+A KPP
Sbjct:    1 ELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNAFIRIIGFDNNRQVQCISFIAYKPP 77          
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS_CHLMO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Chlamydomonas moewusii GN=RBCS PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.872e-32
Identity = 59/125 (47.20%), Postives = 84/125 (67.20%), Query Frame = 1
Query:  226 KVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFE------LEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 582
            KVW P   K++ET SYLPPL+++ + +++ Y++ +GW PCLEF       +      R    S GYYD RYWTMWKLPM+GCTD +QVL+EV   Q  +P+ ++R++ FDN +QVQC+ FL  +P
Sbjct:   30 KVWQPVNNKQYETFSYLPPLTNQKIGRQVDYIINNGWTPCLEFADPSTSFVSNANAVRLQGVSAGYYDNRYWTMWKLPMFGCTDPSQVLREVSACQVAFPNVYIRLVAFDNVKQVQCMGFLVQRP 154          
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS1_CHLRE (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-1 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.445e-32
Identity = 72/157 (45.86%), Postives = 95/157 (60.51%), Query Frame = 1
Query:  133 RPKSSSAFP-ATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEF-ELEKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 582
            RP  SS  P A  K       +A+     Q M VW P   K FET SYLPPL+DE +  ++ Y++ +GWIPCLEF E +K +V  E     G     YYD RYWTMWKLPM+GC D  QVL+E+    K +P ++VR++ FDN++QVQ + FL  +P
Sbjct:   16 RPARSSVRPMAALKPAVKAAPVAAPAQANQMM-VWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRP 171          
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS3_ACECL (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia cliftonii GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.612e-31
Identity = 68/152 (44.74%), Postives = 89/152 (58.55%), Query Frame = 1
Query:  154 FPATKKTNNDITSIASNGGRVQC--MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 585
            FP   K N      ASN    +C  M VW P   K FET SYLPPL+DE + K++ Y+L + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   FL  +PP
Sbjct:   22 FPRATKNNK---GFASNAAVQKCRDMMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVSSTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 170          
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS4_ACECL (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia cliftonii GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.697e-30
Identity = 66/152 (43.42%), Postives = 87/152 (57.24%), Query Frame = 1
Query:  148 SAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 585
            SA P          + A N  R   M VW P   K FET SYLPPL+DE + K++ Y+L + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   FL  +PP
Sbjct:   20 SAVPKVSINRKGFLNTAMNKKRE--MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169          
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS6_ACECL (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Acetabularia cliftonii GN=RBCS-6 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.483e-29
Identity = 60/127 (47.24%), Postives = 81/127 (63.78%), Query Frame = 1
Query:  223 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 585
            M VW P   K FET SYLPPL+DE + K++ Y+L + W PCLEF   ++ +   E+  + G     Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   FL  +PP
Sbjct:   43 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANAWTPCLEFAASDQAYAGNENCITMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLTEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169          
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS3_ACEAT (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia acetabulum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.483e-29
Identity = 69/166 (41.57%), Postives = 95/166 (57.23%), Query Frame = 1
Query:  106 SGQHGRPLHRPKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 585
            S +  +PL  PK       T       T+IA+     + M VW P   K FET S+LPPL+DE + K++ Y+L + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTDA+QVL E+    K +P +++R++ FD  RQVQ   FL  +PP
Sbjct:   13 SKECAKPLASPK------VTLNKRGFATTIATKN---RGMMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILINSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDASQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169          
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS5_ACECL (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia cliftonii GN=RBCS-5 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.937e-29
Identity = 60/127 (47.24%), Postives = 80/127 (62.99%), Query Frame = 1
Query:  223 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 585
            M VW P   K FET SYLPPL+DE + K++ Y+L + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   FL  +PP
Sbjct:   45 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 171          
BLAST of CX296701 vs. ExPASy Swiss-Prot
Match: RBS2_ACEAT (Ribulose bisphosphate carboxylase small chain 2, chloroplastic (Fragment) OS=Acetabularia acetabulum GN=RBCS-2 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.530e-29
Identity = 68/166 (40.96%), Postives = 93/166 (56.02%), Query Frame = 1
Query:  106 SGQHGRPLHRPKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 585
            S +  +PL  PK       T       T+IA+       M VW P   K FET S+LPPL+DE + K++ Y+L + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   FL  +PP
Sbjct:    4 SKECAKPLATPK------VTLNKRGFATTIATKNRE---MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 160          
The following BLAST results are available for this feature:
BLAST of CX296701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
RBS2_CHLRE1.434e-3246.50Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS_SINAL1.872e-3277.92Ribulose bisphosphate carboxylase small chain (Fra... [more]
RBS_CHLMO1.872e-3247.20Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_CHLRE2.445e-3245.86Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS3_ACECL4.612e-3144.74Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS4_ACECL8.697e-3043.42Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS6_ACECL1.483e-2947.24Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS3_ACEAT1.483e-2941.57Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS5_ACECL1.937e-2947.24Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS2_ACEAT2.530e-2940.96Ribulose bisphosphate carboxylase small chain 2, c... [more]

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Properties
Property NameValue
Genbank descriptionC05801H01SK FerrChloL1 Citrus clementina cDNA clone C05801H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296701 ID=CX296701; Name=CX296701; organism=Citrus clementina; type=EST; length=729bp
GAGGCCTCGCTGCCGAATTCGGCACGAGGAGAAGGAGCAAGTACCAATGG
CTTCCTCAATGATCTCATCGACCACCGTTGCCACCGCGAACCGCGCCAGC
CTTGCTCAGGCCAGCATGGTCGCCCCCTTCACCGGCCCAAGTCTTCTTCT
GCTTTCCCAGCAACCAAGAAGACCAACAATGACATTACTTCCATTGCAAG
CAACGGCGGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTGGCTTGA
AGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGCTTTG
CTCAAGGAAATCAGTTACCTTCTCCGCTCCGGCTGGATTCCCTGCTTGGA
ATTCGAGTTGGAGAAAGGATGGGTGTACCGTGAGCACCACAGCTCACCAG
GATACTACGATGGACGCTACTGGACAATGTGGAAGCTGCCCATGTATGGG
TGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGGGAGGTCCAGAAGGA
ATACCCACATTCATTCGTCCGAATTATCGGATTTGACAACAAGCGTCAAG
TGCAGTGCATCAGTTTCCTTGCTGCCAAGCCACCAGGCGTCTAGGTTCCC
AATTAAATTTGTGTAACCACCCATGCAATATTGTTGATTATTATTATGTG
TAACCCCCATAATGATCATTCGATCAATGGGGGTTCGGTTTGCGTTTAAT
TTGTACTTAGGCTGCTGTTGCTGCTGCTC
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