CX296714

Overview
NameCX296714
Unique NameCX296714
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length182
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296714 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.914e-12
Identity = 34/55 (61.82%), Postives = 38/55 (69.09%), Query Frame = 2
Query:   17 PRPPIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 181
            P   IDFFGALRARVYDDEVRKW          K LVNS++   TFEQP+MT+EK
Sbjct:  328 PGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEK 382          
BLAST of CX296714 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.719e-12
Identity = 33/55 (60.00%), Postives = 36/55 (65.45%), Query Frame = 2
Query:   17 PRPPIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 181
            P   IDFFGALRARVY DEVRKW          K LVNSK+  P FEQP MT++K
Sbjct:  336 PGQSIDFFGALRARVYHDEVRKWVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQK 390          
BLAST of CX296714 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.719e-12
Identity = 33/57 (57.89%), Postives = 38/57 (66.67%), Query Frame = 2
Query:   11 HLPRPPIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 181
            + P   IDFFGALRARVYDDEVRKW            L+NS +  PTFEQP+MT+EK
Sbjct:  340 NFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEK 396          
BLAST of CX296714 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.139e-11
Identity = 33/55 (60.00%), Postives = 37/55 (67.27%), Query Frame = 2
Query:   17 PRPPIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 181
            P   IDFFGALRARVYDDEVRKW            L+NS +  PTFEQP+MT+EK
Sbjct:  342 PGQSIDFFGALRARVYDDEVRKWVSGTGIEAIGDKLLNSFDGPPTFEQPKMTVEK 396          
BLAST of CX296714 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.537e-11
Identity = 34/55 (61.82%), Postives = 36/55 (65.45%), Query Frame = 2
Query:   17 PRPPIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 181
            P   IDFFGALRARVYDDEVRK+          K LVNS+E  P FEQP MT EK
Sbjct:  338 PGQSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEK 392          
The following BLAST results are available for this feature:
BLAST of CX296714 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RCAA_HORVU3.914e-1261.82Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL8.719e-1260.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC8.719e-1257.89Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC1.139e-1160.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH2.537e-1161.82Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionC05802A03SK FerrChloL1 Citrus clementina cDNA clone C05802A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296714 ID=CX296714; Name=CX296714; organism=Citrus clementina; type=EST; length=182bp
AGCTTGTCGACACCTTCCCCGGCCACCCATTGATTTCTTTGGAGCCCTGA
GGGCCAGAGTCTATGATGATGAGGTGAGGAAGTGGATCTCTGGTGTTGGT
GTTGGAAGCATTGGCAAGAGCCTTGTGAACTCAAAGGAAGCAGCCCCAAC
ATTCGAGCAACCAAGGATGACAATGGAGAAGC
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