CX296720

Overview
NameCX296720
Unique NameCX296720
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3094 contig Ccv1_Contig3094:208..961. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296720 vs. ExPASy Swiss-Prot
Match: GCN5_YEAST (Histone acetyltransferase GCN5 OS=Saccharomyces cerevisiae GN=GCN5 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.026e-12
Identity = 41/110 (37.27%), Postives = 63/110 (57.27%), Query Frame = 2
Query:  428 KRPKMDRGVTHQCSV--ILKSLMMHPAGWVFNRPVDPMKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPEKYVHKMAQELNKSLDIKME 751
            +RPK  RG  H  ++  IL  L  H A W F +PV+  K ++PDY+  I +PMDL T++ +L+ N Y   ++F+ D RL F+N  +YN      +K A  L K  + K++
Sbjct:  325 QRPK--RG-PHDAAIQNILTELQNHAAAWPFLQPVN--KEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGENTSYYKYANRLEKFFNNKVK 429          
BLAST of CX296720 vs. ExPASy Swiss-Prot
Match: GCN5_CANGA (Histone acetyltransferase GCN5 OS=Candida glabrata GN=GCN5 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.026e-12
Identity = 43/110 (39.09%), Postives = 62/110 (56.36%), Query Frame = 2
Query:  428 KRPKMDRGVTHQCSV--ILKSLMMHPAGWVFNRPVDPMKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPEKYVHKMAQELNKSLDIKME 751
            +RPK  RG  H  ++  IL  L  H A W F RPV+  K ++PDY+  I +PMDL T++ +L+ N Y   +EF+ D RL  +N  LYN      +K A  L K  + K++
Sbjct:  432 QRPK--RG-PHYAAIQNILVELQNHAAAWPFLRPVN--KEEVPDYYEFIKEPMDLSTMELKLENNKYEKMEEFIYDARLVCNNCRLYNGENTSYYKYANRLEKFFNNKVK 536          
BLAST of CX296720 vs. ExPASy Swiss-Prot
Match: BPTF_HUMAN (Nucleosome-remodeling factor subunit BPTF OS=Homo sapiens GN=BPTF PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.750e-12
Identity = 35/84 (41.67%), Postives = 48/84 (57.14%), Query Frame = 2
Query:  473 ILKSLMMHPAGWVFNRPVDPMKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPEKYVHKMAQEL 724
            +L+SL  H   W F  PVDP   D PDY+ +I +PMDL T++ R+ R  Y    EFVAD+   F N   YNP +   ++ A+ L
Sbjct: 2939 VLRSLQAHKMAWPFLEPVDPN--DAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDSPFYQCAEVL 3020          
BLAST of CX296720 vs. ExPASy Swiss-Prot
Match: EP300_HUMAN (Histone acetyltransferase p300 OS=Homo sapiens GN=EP300 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.286e-12
Identity = 37/90 (41.11%), Postives = 51/90 (56.67%), Query Frame = 2
Query:  497 PAGWVFNRPVDPMKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPE----KYVHKMAQELNKSLDIKMES 754
            P    F +PVDP  L IPDYF I+  PMDL T+K +LD   Y    ++V D+ L F+NA LYN       KY  K+++   + +D  M+S
Sbjct: 1070 PESLPFRQPVDPQLLGIPDYFDIVKSPMDLSTIKRKLDTGQYQEPWQYVDDIWLMFNNAWLYNRKTSRVYKYCSKLSEVFEQEIDPVMQS 1159          
BLAST of CX296720 vs. ExPASy Swiss-Prot
Match: CBP_HUMAN (CREB-binding protein OS=Homo sapiens GN=CREBBP PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.286e-12
Identity = 38/90 (42.22%), Postives = 51/90 (56.67%), Query Frame = 2
Query:  497 PAGWVFNRPVDPMKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPE----KYVHKMAQELNKSLDIKMES 754
            P    F +PVDP  L IPDYF I+  PMDL T+K +LD   Y    ++V DV L F+NA LYN       K+  K+A+   + +D  M+S
Sbjct: 1106 PESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQS 1195          
BLAST of CX296720 vs. ExPASy Swiss-Prot
Match: NU301_DROME (Nucleosome-remodeling factor subunit NURF301 OS=Drosophila melanogaster GN=E(bx) PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.899e-12
Identity = 31/84 (36.90%), Postives = 49/84 (58.33%), Query Frame = 2
Query:  473 ILKSLMMHPAGWVFNRPVDPMKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPEKYVHKMAQEL 724
            ++K + +H + W F  PVDP   + PDY+ +I +PMDL  ++ +L+ N Y+   EF+ D+   F N   YNP E   +K A+ L
Sbjct: 2568 LIKQMQLHKSAWPFMEPVDPK--EAPDYYKVIKEPMDLKRMEIKLESNTYTKLSEFIGDMTKIFDNCRYYNPKESSFYKCAEAL 2649          
BLAST of CX296720 vs. ExPASy Swiss-Prot
Match: BDF1_YEAST (Bromodomain-containing factor 1 OS=Saccharomyces cerevisiae GN=BDF1 PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 3.899e-12
Identity = 47/161 (29.19%), Postives = 75/161 (46.58%), Query Frame = 2
Query:  272 SSVAESNQLMMSKPYRSSGGKKMIASEHSKERSSILPFNKRQAQEVIEGPKDKRPKMDRGVTHQCSVILKSLMM--HPA-GWVFNRPVDPMKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPEKYVHKMAQELNKSLDIK 745
            SS  E   +++ +    +G  K     H  +   I P+  ++       PK KR +        C  +LK LM   H +  + F  PVDP+ +++P YF  + +PMDLGT+  +L+   Y   ++F  DVRL F N   +NP    V+ M   L +  + K
Sbjct:  269 SSAQEDAPIVIRRAQTHNGRPKRTI--HPPKSKDIYPYESKK-------PKSKRLQQ---AMKFCQSVLKELMAKKHASYNYPFLEPVDPVSMNLPTYFDYVKEPMDLGTIAKKLNDWQYQTMEDFERDVRLVFKNCYTFNPDGTIVNMMGHRLEEVFNSK 417          

HSP 2 Score: 67.3958 bits (163), Expect = 9.603e-11
Identity = 46/165 (27.88%), Postives = 81/165 (49.09%), Query Frame = 2
Query:  269 SSSVAESNQLMMSKPYRSSGGKKMIASEHSKERSSI-LPFNKRQAQ----EVIEGPKDKRPKMDRGVTHQCSVILKSLMMHPAGWVFNRPVDPMKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPEKYVHKMAQELNKSLDIKM 748
            + S AE  Q  + K     G K+    E+SK+   + +P     A     ++   P++  PK  +       + +K++        F +PVDP+KLDIP YF+ I +PMDL T++ +L+   Y V ++   D  L  +N++ +N P   + +MA+ +  S +  M
Sbjct:   90 TGSGAEDEQQGLKKEEGGQGTKQEDLDENSKQELPMEVPKEPAPAPPPEPDMNNLPQNPIPKHQQ---KHALLAIKAVKRLKDARPFLQPVDPVKLDIPFYFNYIKRPMDLSTIERKLNVGAYEVPEQITEDFNLMVNNSIKFNGPNAGISQMARNIQASFEKHM 251          
BLAST of CX296720 vs. ExPASy Swiss-Prot
Match: GCN5_SCHPO (Histone acetyltransferase gcn5 OS=Schizosaccharomyces pombe GN=gcn5 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.650e-12
Identity = 40/116 (34.48%), Postives = 57/116 (49.14%), Query Frame = 2
Query:  401 QEVIEGPKDKRPKMDRGVTHQCSVILKSLMMHPAGWVFNRPVDPMKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPEKYVHKMAQELNKSLDIKM 748
            +E+ E  K  RPK    V     ++   +  HP+ W F +PV   K D+PDY+ +I  PMDL T++ RL  N Y   +EF+ D +  F N   YN      +K A  L K    K+
Sbjct:  334 KEMEELSKKPRPKPFFAVLE---MLFTEMQNHPSSWPFMQPVS--KEDVPDYYEVIEHPMDLSTMEFRLRNNQYESVEEFIRDAKYIFDNCRSYNDSNTTYYKNADRLEKFFQKKL 444          
BLAST of CX296720 vs. ExPASy Swiss-Prot
Match: GCN5_ASHGO (Histone acetyltransferase GCN5 OS=Ashbya gossypii GN=GCN5 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.650e-12
Identity = 34/93 (36.56%), Postives = 52/93 (55.91%), Query Frame = 2
Query:  473 ILKSLMMHPAGWVFNRPVDPMKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPEKYVHKMAQELNKSLDIKME 751
            +L  L  H A W F +PV+  + ++PDY+  I +PMDL T++ +L+ N Y   ++F+ D RL F+N   YN       K A  L K  + KM+
Sbjct:  352 VLTELQNHAAAWPFLQPVN--RDEVPDYYEFIKEPMDLSTMEIKLENNRYEKMEDFIYDARLIFNNCRAYNGENTSYFKYANRLEKFFNTKMK 442          
BLAST of CX296720 vs. ExPASy Swiss-Prot
Match: GCN5_DEBHA (Histone acetyltransferase GCN5 OS=Debaryomyces hansenii GN=GCN5 PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.481e-11
Identity = 33/93 (35.48%), Postives = 56/93 (60.22%), Query Frame = 2
Query:  473 ILKSLMMHPAGWVFNRPVDPMKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPEKYVHKMAQELNKSLDIKME 751
            +L  L  HP+ W F+ PV+  K ++ DY+ +I +PMDL T++++L+ + Y   D+F+ D RL F+N   YN       K A +L K ++ K++
Sbjct:  354 LLSELTNHPSAWPFSTPVN--KEEVGDYYDVIKEPMDLSTMESKLENDKYDSFDQFLYDARLIFNNCRSYNADSTTYFKNATKLEKFMNNKIK 444          
The following BLAST results are available for this feature:
BLAST of CX296720 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
GCN5_YEAST1.026e-1237.27Histone acetyltransferase GCN5 OS=Saccharomyces ce... [more]
GCN5_CANGA1.026e-1239.09Histone acetyltransferase GCN5 OS=Candida glabrata... [more]
BPTF_HUMAN1.750e-1241.67Nucleosome-remodeling factor subunit BPTF OS=Homo ... [more]
EP300_HUMAN2.286e-1241.11Histone acetyltransferase p300 OS=Homo sapiens GN=... [more]
CBP_HUMAN2.286e-1242.22CREB-binding protein OS=Homo sapiens GN=CREBBP PE=... [more]
NU301_DROME3.899e-1236.90Nucleosome-remodeling factor subunit NURF301 OS=Dr... [more]
BDF1_YEAST3.899e-1229.19Bromodomain-containing factor 1 OS=Saccharomyces c... [more]
GCN5_SCHPO6.650e-1234.48Histone acetyltransferase gcn5 OS=Schizosaccharomy... [more]
GCN5_ASHGO6.650e-1236.56Histone acetyltransferase GCN5 OS=Ashbya gossypii ... [more]
GCN5_DEBHA1.481e-1135.48Histone acetyltransferase GCN5 OS=Debaryomyces han... [more]

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Properties
Property NameValue
Genbank descriptionC05802A10SK FerrChloL1 Citrus clementina cDNA clone C05802A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296720 ID=CX296720; Name=CX296720; organism=Citrus clementina; type=EST; length=754bp
GAGGCCTCGTGCCGAATTCGGCACGAGGGGACACTGCCTTACTCAGTGCA
CTGTTTGAGGAGGTCAGTTTTTATATTGCTTGACAACTCGTAAGCATCGA
GGCTTCTTCCTTCGGTATTTGCAGCTTCTCACCATGATTGCTACTGAAGC
TGTAATAACTAAGAAGAAGTTAAAGATTAAATTTGGGAGCCAGAGAATTG
AAGCCGTTCCTGGGTCGCAACCATGTGAATATGGCCAGCAGCAATCTCAC
GTTGAAAATTGGCGCCACAGTTCTTCTGTGGCAGAAAGTAATCAATTGAT
GATGAGTAAACCATATCGTTCATCTGGTGGAAAAAAGATGATTGCTTCTG
AGCACTCAAAGGAAAGATCGTCTATTCTACCTTTTAACAAGCGTCAAGCC
CAGGAAGTAATTGAGGGTCCAAAGGATAAGAGGCCGAAGATGGATCGTGG
TGTAACTCATCAGTGTTCTGTCATTTTGAAGTCACTGATGATGCATCCAG
CTGGCTGGGTTTTTAATCGGCCAGTGGATCCCATGAAGTTGGACATCCCT
GATTACTTCTCGATCATATCTAAGCCCATGGATTTGGGCACAGTAAAAAC
TAGACTGGACAGGAATTTGTACTCTGTATCTGATGAGTTTGTGGCTGATG
TCAGACTGACTTTTTCTAATGCCATGCTTTATAATCCTCCTGAGAAATAT
GTTCATAAGATGGCACAGGAGTTAAACAAATCTCTTGATATAAAAATGGA
ATCC
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