CX296726

Overview
NameCX296726
Unique NameCX296726
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_XANC8 (Betaine aldehyde dehydrogenase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=betB PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.860e-27
Identity = 78/212 (36.79%), Postives = 108/212 (50.94%), Query Frame = 1
Query:   22 TSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGD-TGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGA 642
            T + PLGVV AI  +NYP+ +A+ K APAL AGN+++ KP     + AL +   F  AG P G+ + + G G+ +G  LT HP +  ISFTGG  TG  +   A    L+   MELGGK   IV  DADLDL A   +   F  SGQ CT    V V  ++  +           + +G P +E     P+VS +    +   +   K +GA
Sbjct:  138 TRHEPLGVVGAIGAWNYPIQIALWKAAPALAAGNAMIFKPSEVTPLTALKLAEIFTEAGLPDGVFNVLPGDGASVGHALTEHPEIEKISFTGGTATGRKVMASASSSSLKDVTMELGGKSPLIVCADADLDLAADIAMMANFYSSGQVCTNGTRVFVPRALRTAFEARLLARVQRIHIGDPLDERTTFGPMVSAAHMQRVLEHIEQGKAEGA 349          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_XANC5 (Betaine aldehyde dehydrogenase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=betB PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.860e-27
Identity = 78/212 (36.79%), Postives = 108/212 (50.94%), Query Frame = 1
Query:   22 TSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGD-TGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGA 642
            T + PLGVV AI  +NYP+ +A+ K APAL AGN+++ KP     + AL +   F  AG P G+ + + G G+ +G  LT HP +  ISFTGG  TG  +   A    L+   MELGGK   IV  DADLDL A   +   F  SGQ CT    V V  ++  +           + +G P +E     P+VS +    +   +   K +GA
Sbjct:  138 TRHEPLGVVGAIGAWNYPIQIALWKAAPALAAGNAMIFKPSEVTPLTALKLAEIFTEAGLPDGVFNVLPGDGASVGTALTEHPQIEKISFTGGTATGRKVMASASSSSLKEVTMELGGKSPLIVCADADLDLAADIAMMANFYSSGQVCTNGTRVFVPRALRHAFEARLLARVQRIHIGDPLDERTTFGPLVSAAHMQRVLEHIEQGKAEGA 349          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ROCA2_BACSU (1-pyrroline-5-carboxylate dehydrogenase 2 OS=Bacillus subtilis GN=ycgN PE=3 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.157e-26
Identity = 73/223 (32.74%), Postives = 114/223 (51.12%), Query Frame = 1
Query:    1 ERTKYCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMI-PLQM-------ELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADS-LXXXXXXXXXXLTVGPPEESCDITPVVSESSANFIEGLVMDAKQKG 639
            E+ +Y  T   P GV + IPP+N+   +        ++ GN++VLKP +   V A   V     +G PKG+++ V G G+E+GD+L  HP  + I+FTG  + G  I ++A  + P Q        E+GGKD  +V EDAD++L A +I    F ++GQ+C+A    +V E V D  L          +T  P      + PV+ + S + I   +   KQ+G
Sbjct:  163 EKNQYVYT---PTGVTVVIPPWNFLFAIMAGTTVAPIVTGNTVVLKPASATPVIAAKFVEVLEESGLPKGVVNFVPGSGAEVGDYLVDHPKTSLITFTGSREVGTRIFERAAKVQPGQQHLKRVIAEMGGKDTVVVDEDADIELAAQSIFTSAFGFAGQKCSAGSRAVVHEKVYDQVLERVIEITESKVTAKPDSADVYMGPVIDQGSYDKIMSYIEIGKQEG 382          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_STRMK (Betaine aldehyde dehydrogenase OS=Stenotrophomonas maltophilia (strain K279a) GN=betB PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.157e-26
Identity = 82/251 (32.67%), Postives = 116/251 (46.22%), Query Frame = 1
Query:    7 TKYCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGATFCQEYRR-------EGNLIWPLLLDNVRPDMRI 723
            + +  T   PLGVV  I  +NYP+ +A+ K APAL AGN++V KP     + A+ +   +  AG P G+ + V G G EIG +LT HP +  ISFTGG  TG  +   A    L+   MELGGK   ++ +DADLD  A   +   F  SGQ CT    V V  S+  +           + +G P     +  P+ S      +   +   K +GA       R        G  + P +  + R DM I
Sbjct:  133 SSFFYTRREPLGVVAGIGAWNYPIQIAMWKSAPALAAGNAMVFKPSEVTPLTAIRLAEIYTEAGVPAGVFNVVQGPGREIGQWLTEHPVIEKISFTGGVATGKKVMASAASSSLKEVTMELGGKSPLVICDDADLDRAADIAVMANFFSSGQVCTNGTRVFVPRSMLAAFEAAVVERVKRIRIGDPMAAETNFGPLTSFPHMENVLRYIESGKAEGARLLTGGGRATEGALANGAYVLPTVFSDCRDDMTI 383          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_STRM5 (Betaine aldehyde dehydrogenase OS=Stenotrophomonas maltophilia (strain R551-3) GN=betB PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.157e-26
Identity = 82/251 (32.67%), Postives = 116/251 (46.22%), Query Frame = 1
Query:    7 TKYCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGATFCQEYRR-------EGNLIWPLLLDNVRPDMRI 723
            + +  T   PLGVV  I  +NYP+ +A+ K APAL AGN++V KP     + A+ +   +  AG P G+ + V G G EIG +LT HP +  ISFTGG  TG  +   A    L+   MELGGK   ++ +DADLD  A   +   F  SGQ CT    V V  S+  +           + +G P     +  P+ S      +   +   K +GA       R        G  + P +  + R DM I
Sbjct:  133 SSFFYTRREPLGVVAGIGAWNYPIQIAMWKSAPALAAGNAMVFKPSEVTPLTAIRLAEIYTEAGVPAGVFNVVQGPGREIGQWLTEHPVIEKISFTGGVATGKKVMASAASSSLKEVTMELGGKSPLVICDDADLDRAADIAVMANFFSSGQVCTNGTRVFVPRSMLAAFEAAVVERVKRIRIGDPMAAETNFGPLTSFPHMENVLRYIESGKAEGARLLTGGGRATEGALANGAYVLPTVFSDCRDDMTI 383          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_RHILW (Betaine aldehyde dehydrogenase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=betB PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.157e-26
Identity = 80/247 (32.39%), Postives = 116/247 (46.96%), Query Frame = 1
Query:   13 YCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTG--ISISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGATFC------QEYRREGNLIWPLLLDNVRPDMRI 723
            +  T  +PLGV + I  +NYP  +A  K APALI+GN++V KP     + AL +    H AG PKGL + + G   + G  L  HP V  +S TG   TG  ++ +    +  + MELGGK   IV +DADLD      + G F  +GQ C+    V V + +              + +G P +E+  I P+VS +    +   +   K +GAT             EG  I P +  +V  DM I
Sbjct:  135 FAYTKRVPLGVCVGIGAWNYPQQIACWKAAPALISGNAMVFKPSENTPLGALKIAEILHEAGLPKGLFNVIQG-DRDTGPLLVNHPDVAKVSLTGSVPTGRRVAAAAAGNLKHVTMELGGKSPLIVFDDADLDSAVGGAMLGNFYSTGQVCSNGTRVFVQKGIKTEFLKRLKARTEAMLIGDPLDEATQIGPMVSWAQREKVVAYIEKGKAEGATLVAGGGIPNNVSGEGYYIQPTVFADVTDDMTI 380          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_ACIAD (Betaine aldehyde dehydrogenase OS=Acinetobacter sp. (strain ADP1) GN=betB PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.157e-26
Identity = 80/251 (31.87%), Postives = 120/251 (47.81%), Query Frame = 1
Query:    7 TKYCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEES-CDITPVVSESSANFIEGLVMDAKQKGATFCQEYRR-------EGNLIWPLLLDNVRPDMRI 723
            + +  T   PLGVV  I  +NYP+ +A+ K APAL AGN+++ KP     + A  +   +  AG P G+ + V G G EIG +LT H  +  ISFTGG +TG  +   A    L+   MELGGK   I+ EDA+LD  A   +   F  SGQ CT    V + + +  +           + +G P+ +  +  P+VS      +   +   KQ+GA       R       +G  + P +  +   DM+I
Sbjct:  133 SSFFYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTPLTAFKLAEIYSEAGLPAGVFNVVQGAGREIGQWLTEHAVIEKISFTGGVETGKKVMASAAGSTLKEVTMELGGKSPLIICEDANLDRAADIAVMANFFSSGQVCTNGTRVFIPQRLKAAFEQAVVERVKRIRMGDPQHTDTNFGPLVSFPHMEKVLSYIESGKQQGAKVLIGGERATTGLLAQGAYVQPTVFTDCHDDMKI 383          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: AL1A1_MACFA (Retinal dehydrogenase 1 OS=Macaca fascicularis GN=ALDH1A1 PE=2 SV=3)

HSP 1 Score: 120.168 bits (300), Expect = 1.157e-26
Identity = 80/245 (32.65%), Postives = 121/245 (49.39%), Query Frame = 1
Query:   13 YCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGATF-C--QEYRREGNLIWPLLLDNVRPDMRI 723
            +  T + P+GV   I P+N+P+ + + KI PAL  GN++V+KP  Q  + ALH+      AGFP G+++ V G G   G  ++ H  ++ ++FTG  + G  I + AG   L+   +ELGGK  CIVL DADLD        G F + GQ C A   + V ES+ D              +G P        P + +   + I  L+   K++GA   C    +  +G  + P +  NV  +MRI
Sbjct:  152 FTYTRHEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVLADADLDNAVEFAHHGVFYHQGQCCIAASRIFVEESIYDEFVRRSVERAKKYILGNPLTPGATQGPQIDKEQYDKILDLIESGKKEGAKLECGGGPWGNKGYFVQPTVFSNVTDEMRI 396          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: AL1A1_HUMAN (Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.511e-26
Identity = 80/245 (32.65%), Postives = 121/245 (49.39%), Query Frame = 1
Query:   13 YCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGATF-C--QEYRREGNLIWPLLLDNVRPDMRI 723
            +  T + P+GV   I P+N+P+ + + KI PAL  GN++V+KP  Q  + ALH+      AGFP G+++ V G G   G  ++ H  ++ ++FTG  + G  I + AG   L+   +ELGGK  CIVL DADLD        G F + GQ C A   + V ES+ D              +G P        P + +   + I  L+   K++GA   C    +  +G  + P +  NV  +MRI
Sbjct:  152 FTYTRHEPIGVCGQIIPWNFPLVMLIWKIGPALSCGNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVLADADLDNAVEFAHHGVFYHQGQCCIAASRIFVEESIYDEFVRRSVERAKKYILGNPLTPGVTQGPQIDKEQYDKILDLIESGKKEGAKLECGGGPWGNKGYFVQPTVFSNVTDEMRI 396          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: GABD2_MYCTU (Putative succinate-semialdehyde dehydrogenase [NADP+] 2 OS=Mycobacterium tuberculosis GN=gabD2 PE=1 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 1.974e-26
Identity = 84/238 (35.29%), Postives = 123/238 (51.68%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNC--ISFTGGD-TGISISKKAG--MIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEE-SCDITPVVSESSANFIEGLVMDAKQKGATFCQEYRRE---GNLIW-PLLLDNVRPDM 717
            P GVV  I P+NYP+ L VS   PAL+AGN++VLKP +Q    AL      + AG P+ L + V G GS +G  +T     NC  + FTG   TG  +++ AG  +I    ELGGK+  IV   A+LD VA    +  FS +GQ C +++ + V + +A+            + +G   + S D+  ++SE+    + G V DA  KGA      +     G L + P +L NV P+M
Sbjct:  147 PKGVVGVISPWNYPMTLTVSDSVPALVAGNAVVLKPDSQTPYCALACAELLYRAGLPRALYAIVPGPGSVVGTAIT----DNCDYLMFTGSSATGSRLAEHAGRRLIGFSAELGGKNPMIVARGANLDKVAKAATRACFSNAGQLCISIERIYVEKDIAEEFTRKFGDAVRNMKLGTAYDFSVDMGSLISEAQLKTVSGHVDDATAKGAKVIAGGKARPDIGPLFYEPTVLTNVAPEM 380          
The following BLAST results are available for this feature:
BLAST of CX296726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
BETB_XANC88.860e-2736.79Betaine aldehyde dehydrogenase OS=Xanthomonas camp... [more]
BETB_XANC58.860e-2736.79Betaine aldehyde dehydrogenase OS=Xanthomonas camp... [more]
ROCA2_BACSU1.157e-2632.741-pyrroline-5-carboxylate dehydrogenase 2 OS=Bacil... [more]
BETB_STRMK1.157e-2632.67Betaine aldehyde dehydrogenase OS=Stenotrophomonas... [more]
BETB_STRM51.157e-2632.67Betaine aldehyde dehydrogenase OS=Stenotrophomonas... [more]
BETB_RHILW1.157e-2632.39Betaine aldehyde dehydrogenase OS=Rhizobium legumi... [more]
BETB_ACIAD1.157e-2631.87Betaine aldehyde dehydrogenase OS=Acinetobacter sp... [more]
AL1A1_MACFA1.157e-2632.65Retinal dehydrogenase 1 OS=Macaca fascicularis GN=... [more]
AL1A1_HUMAN1.511e-2632.65Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1... [more]
GABD2_MYCTU1.974e-2635.29Putative succinate-semialdehyde dehydrogenase [NAD... [more]

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Properties
Property NameValue
Genbank descriptionC05802B04SK FerrChloL1 Citrus clementina cDNA clone C05802B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296726 ID=CX296726; Name=CX296726; organism=Citrus clementina; type=EST; length=724bp
GAGAGGACTAAATATTGTCTCACTTCAAACATTCCACTTGGTGTGGTTTT
GGCCATTCCACCATTCAACTATCCAGTCAATCTTGCCGTTTCCAAAATTG
CTCCTGCACTGATTGCTGGAAATTCCCTTGTGCTTAAGCCTCCTACTCAG
GGTGCTGTTGCTGCGCTTCACATGGTGCATTGCTTTCACTTGGCTGGTTT
TCCTAAAGGTCTTATAAGCTGTGTCACCGGGAAAGGTTCTGAGATTGGTG
ATTTCCTTACTATGCATCCTGCAGTGAACTGTATAAGCTTCACTGGTGGA
GACACTGGAATTTCAATCTCTAAGAAGGCTGGAATGATCCCTCTTCAGAT
GGAGTTGGGAGGCAAAGATGCTTGTATCGTGCTTGAGGATGCTGACCTTG
ATTTGGTTGCCGCAAACATAATAAAAGGAGGATTTTCTTACAGTGGTCAA
AGATGCACTGCAGTTAAGGTTGTCTTGGTGATGGAATCTGTAGCAGATTC
CCTGGTCGAGAAGGTTAAGGCTAAAGTGGTGAAACTGACAGTTGGCCCTC
CTGAAGAAAGCTGTGATATCACTCCAGTTGTGTCGGAATCATCTGCAAAT
TTCATTGAAGGGCTGGTTATGGATGCCAAACAGAAAGGAGCAACATTCTG
TCAAGAGTACAGGAGAGAAGGCAACCTCATCTGGCCCTTGTTGCTTGACA
ATGTTAGGCCCGATATGAGGATCG
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