CX296726

Overview
NameCX296726
Unique NameCX296726
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12872 contig Ccv1_Contig12872:500..1223. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: GABD2_MYCTA (Putative succinate-semialdehyde dehydrogenase [NADP+] 2 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=gabD2 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.974e-26
Identity = 84/238 (35.29%), Postives = 123/238 (51.68%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNC--ISFTGGD-TGISISKKAG--MIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEE-SCDITPVVSESSANFIEGLVMDAKQKGATFCQEYRRE---GNLIW-PLLLDNVRPDM 717
            P GVV  I P+NYP+ L VS   PAL+AGN++VLKP +Q    AL      + AG P+ L + V G GS +G  +T     NC  + FTG   TG  +++ AG  +I    ELGGK+  IV   A+LD VA    +  FS +GQ C +++ + V + +A+            + +G   + S D+  ++SE+    + G V DA  KGA      +     G L + P +L NV P+M
Sbjct:  147 PKGVVGVISPWNYPMTLTVSDSVPALVAGNAVVLKPDSQTPYCALACAELLYRAGLPRALYAIVPGPGSVVGTAIT----DNCDYLMFTGSSATGSRLAEHAGRRLIGFSAELGGKNPMIVARGANLDKVAKAATRACFSNAGQLCISIERIYVEKDIAEEFTRKFGDAVRNMKLGTAYDFSVDMGSLISEAQLKTVSGHVDDATAKGAKVIAGGKARPDIGPLFYEPTVLTNVAPEM 380          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: GABD2_MYCBP (Putative succinate-semialdehyde dehydrogenase [NADP+] 2 OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=gabD2 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.974e-26
Identity = 84/238 (35.29%), Postives = 123/238 (51.68%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNC--ISFTGGD-TGISISKKAG--MIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEE-SCDITPVVSESSANFIEGLVMDAKQKGATFCQEYRRE---GNLIW-PLLLDNVRPDM 717
            P GVV  I P+NYP+ L VS   PAL+AGN++VLKP +Q    AL      + AG P+ L + V G GS +G  +T     NC  + FTG   TG  +++ AG  +I    ELGGK+  IV   A+LD VA    +  FS +GQ C +++ + V + +A+            + +G   + S D+  ++SE+    + G V DA  KGA      +     G L + P +L NV P+M
Sbjct:  147 PKGVVGVISPWNYPMTLTVSDSVPALVAGNAVVLKPDSQTPYCALACAELLYRAGLPRALYAIVPGPGSVVGTAIT----DNCDYLMFTGSSATGSRLAEHAGRRLIGFSAELGGKNPMIVARGANLDKVAKAATRACFSNAGQLCISIERIYVEKDIAEEFTRKFGDAVRNMKLGTAYDFSVDMGSLISEAQLKTVSGHVDDATAKGAKVIAGGKARPDIGPLFYEPTVLTNVAPEM 380          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: GABD2_MYCBO (Putative succinate-semialdehyde dehydrogenase [NADP+] 2 OS=Mycobacterium bovis GN=gabD2 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.974e-26
Identity = 84/238 (35.29%), Postives = 123/238 (51.68%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNC--ISFTGGD-TGISISKKAG--MIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEE-SCDITPVVSESSANFIEGLVMDAKQKGATFCQEYRRE---GNLIW-PLLLDNVRPDM 717
            P GVV  I P+NYP+ L VS   PAL+AGN++VLKP +Q    AL      + AG P+ L + V G GS +G  +T     NC  + FTG   TG  +++ AG  +I    ELGGK+  IV   A+LD VA    +  FS +GQ C +++ + V + +A+            + +G   + S D+  ++SE+    + G V DA  KGA      +     G L + P +L NV P+M
Sbjct:  147 PKGVVGVISPWNYPMTLTVSDSVPALVAGNAVVLKPDSQTPYCALACAELLYRAGLPRALYAIVPGPGSVVGTAIT----DNCDYLMFTGSSATGSRLAEHAGRRLIGFSAELGGKNPMIVARGANLDKVAKAATRACFSNAGQLCISIERIYVEKDIAEEFTRKFGDAVRNMKLGTAYDFSVDMGSLISEAQLKTVSGHVDDATAKGAKVIAGGKARPDIGPLFYEPTVLTNVAPEM 380          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_VIBVU (Betaine aldehyde dehydrogenase OS=Vibrio vulnificus GN=betB PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.974e-26
Identity = 73/216 (33.80%), Postives = 110/216 (50.93%), Query Frame = 1
Query:   10 KYCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTG-GDTG--ISISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGAT 645
            ++  T   PLG+   I  +NYP+ +A+ K APAL AGN+++ KP  +  ++AL +   F  AG P G+ + V G    +G  LT HP ++ +SFTG   TG  +     A + P+ MELGGK   I+ +DADLD   +  +   F   G+ CT    V V  ++ D+           L VG P      I  ++S+S    + G +  AK+ GAT
Sbjct:  131 QFFYTRREPLGICAGIGAWNYPIQIAMWKAAPALAAGNAMIFKPSEETPLSALKLAELFTQAGVPDGVFNVVQG-DYRVGQMLTAHPEIDKVSFTGESGTGKKVMADSAATLKPVTMELGGKSPLIIFDDADLDDAVSAAMVANFYTQGEVCTHGTRVYVQRAMYDAFVEQLKERTEKLIVGDPMNMETQIGSLISKSHLEKVLGAISSAKESGAT 345          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_RHIEC (Betaine aldehyde dehydrogenase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=betB PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.367e-26
Identity = 80/247 (32.39%), Postives = 117/247 (47.37%), Query Frame = 1
Query:   13 YCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTG--ISISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGATFC------QEYRREGNLIWPLLLDNVRPDMRI 723
            +  T  +PLGV + I  +NYP  +A  K APALI+GN++V KP     + AL +    H AG PKGL + + G   + G  L  HP V  +S TG   TG  ++ +    +  + MELGGK   IV +DADLD      + G F  +GQ C+    V V ++V              + +G P +E+  I P+VS +    +   +   K +GAT             EG  + P +  +V  DM I
Sbjct:  135 FAYTKRVPLGVCVGIGAWNYPQQIACWKGAPALISGNAMVFKPSENTPLGALKIAEILHEAGLPKGLFNVIQG-DRDTGPLLVNHPDVAKVSLTGSVPTGRRVAAAAAGSLKHVTMELGGKSPLIVFDDADLDSAVGGAMLGNFYSTGQVCSNGTRVFVQKAVKAEFLKRLKARTEAMLIGDPLDEATQIGPMVSWAQREKVIAYIEKGKAEGATLVAGGGIPNNVSGEGYYVQPTVFADVTDDMTI 380          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ALDA_STAAW (Putative aldehyde dehydrogenase aldA OS=Staphylococcus aureus (strain MW2) GN=aldA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.367e-26
Identity = 72/207 (34.78%), Postives = 116/207 (56.04%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAG--MIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVG-PPEESCDITPVVSESSANFIEGLVMDAKQKGA 642
            P+GVV A+  +N+P+ LA  KIAPA+ AGN++V++P +   ++ L +   F     PKG+++ +TGKGSE G+ +  H  V+ +SFTG  D G  +++ A   ++P  +ELGGK A I+L+DA+LDL    I  G     G+ C+A   +LV E + D L          + VG P +E+  +     +   + I+  +  AK+  A
Sbjct:  148 PIGVVGAVVAWNFPMLLAAWKIAPAIAAGNTIVIQPSSSTPLSLLEVAKIFQEV-LPKGVVNILTGKGSESGNAIFNHDGVDKLSFTGSTDVGYQVAEAAAKHLVPATLELGGKSANIILDDANLDLAVEGIQLGILFNQGEVCSAGSRLLVHEKIYDQLVPRLQEAFSNIKVGDPQDEATQMGSQTGKDQLDKIQSYIDAAKESDA 353          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ALDA_STAAS (Putative aldehyde dehydrogenase aldA OS=Staphylococcus aureus (strain MSSA476) GN=aldA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.367e-26
Identity = 72/207 (34.78%), Postives = 116/207 (56.04%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAG--MIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVG-PPEESCDITPVVSESSANFIEGLVMDAKQKGA 642
            P+GVV A+  +N+P+ LA  KIAPA+ AGN++V++P +   ++ L +   F     PKG+++ +TGKGSE G+ +  H  V+ +SFTG  D G  +++ A   ++P  +ELGGK A I+L+DA+LDL    I  G     G+ C+A   +LV E + D L          + VG P +E+  +     +   + I+  +  AK+  A
Sbjct:  148 PIGVVGAVVAWNFPMLLAAWKIAPAIAAGNTIVIQPSSSTPLSLLEVAKIFQEV-LPKGVVNILTGKGSESGNAIFNHDGVDKLSFTGSTDVGYQVAEAAAKHLVPATLELGGKSANIILDDANLDLAVEGIQLGILFNQGEVCSAGSRLLVHEKIYDQLVPRLQEAFSNIKVGDPQDEATQMGSQTGKDQLDKIQSYIDAAKESDA 353          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ALDA_STAAN (Putative aldehyde dehydrogenase aldA OS=Staphylococcus aureus (strain N315) GN=aldA PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.367e-26
Identity = 72/207 (34.78%), Postives = 116/207 (56.04%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAG--MIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVG-PPEESCDITPVVSESSANFIEGLVMDAKQKGA 642
            P+GVV A+  +N+P+ LA  KIAPA+ AGN++V++P +   ++ L +   F     PKG+++ +TGKGSE G+ +  H  V+ +SFTG  D G  +++ A   ++P  +ELGGK A I+L+DA+LDL    I  G     G+ C+A   +LV E + D L          + VG P +E+  +     +   + I+  +  AK+  A
Sbjct:  148 PIGVVGAVVAWNFPMLLAAWKIAPAIAAGNTIVIQPSSSTPLSLLEVAKIFQEV-LPKGVVNILTGKGSESGNAIFNHDGVDKLSFTGSTDVGYQVAEAAAKHLVPATLELGGKSANIILDDANLDLAVEGIQLGILFNQGEVCSAGSRLLVHEKIYDQLVPRLQEAFSNIKVGDPQDEATQMGSQTGKDQLDKIQSYIDAAKESDA 353          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ALDA_STAAM (Putative aldehyde dehydrogenase aldA OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=aldA PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.367e-26
Identity = 72/207 (34.78%), Postives = 116/207 (56.04%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAG--MIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVG-PPEESCDITPVVSESSANFIEGLVMDAKQKGA 642
            P+GVV A+  +N+P+ LA  KIAPA+ AGN++V++P +   ++ L +   F     PKG+++ +TGKGSE G+ +  H  V+ +SFTG  D G  +++ A   ++P  +ELGGK A I+L+DA+LDL    I  G     G+ C+A   +LV E + D L          + VG P +E+  +     +   + I+  +  AK+  A
Sbjct:  148 PIGVVGAVVAWNFPMLLAAWKIAPAIAAGNTIVIQPSSSTPLSLLEVAKIFQEV-LPKGVVNILTGKGSESGNAIFNHDGVDKLSFTGSTDVGYQVAEAAAKHLVPATLELGGKSANIILDDANLDLAVEGIQLGILFNQGEVCSAGSRLLVHEKIYDQLVPRLQEAFSNIKVGDPQDEATQMGSQTGKDQLDKIQSYIDAAKESDA 353          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ALDA_STAAC (Putative aldehyde dehydrogenase aldA OS=Staphylococcus aureus (strain COL) GN=aldA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.367e-26
Identity = 72/207 (34.78%), Postives = 116/207 (56.04%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAG--MIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVG-PPEESCDITPVVSESSANFIEGLVMDAKQKGA 642
            P+GVV A+  +N+P+ LA  KIAPA+ AGN++V++P +   ++ L +   F     PKG+++ +TGKGSE G+ +  H  V+ +SFTG  D G  +++ A   ++P  +ELGGK A I+L+DA+LDL    I  G     G+ C+A   +LV E + D L          + VG P +E+  +     +   + I+  +  AK+  A
Sbjct:  148 PIGVVGAVVAWNFPMLLAAWKIAPAIAAGNTIVIQPSSSTPLSLLEVAKIFQEV-LPKGVVNILTGKGSESGNAIFNHDGVDKLSFTGSTDVGYQVAEAAAKHLVPATLELGGKSANIILDDANLDLAVEGIQLGILFNQGEVCSAGSRLLVHEKIYDQLVPRLQEAFSNIKVGNPQDEATQMGSQTGKDQLDKIQSYIDAAKESDA 353          
The following BLAST results are available for this feature:
BLAST of CX296726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GABD2_MYCTA1.974e-2635.29Putative succinate-semialdehyde dehydrogenase [NAD... [more]
GABD2_MYCBP1.974e-2635.29Putative succinate-semialdehyde dehydrogenase [NAD... [more]
GABD2_MYCBO1.974e-2635.29Putative succinate-semialdehyde dehydrogenase [NAD... [more]
BETB_VIBVU1.974e-2633.80Betaine aldehyde dehydrogenase OS=Vibrio vulnificu... [more]
BETB_RHIEC3.367e-2632.39Betaine aldehyde dehydrogenase OS=Rhizobium etli (... [more]
ALDA_STAAW3.367e-2634.78Putative aldehyde dehydrogenase aldA OS=Staphyloco... [more]
ALDA_STAAS3.367e-2634.78Putative aldehyde dehydrogenase aldA OS=Staphyloco... [more]
ALDA_STAAN3.367e-2634.78Putative aldehyde dehydrogenase aldA OS=Staphyloco... [more]
ALDA_STAAM3.367e-2634.78Putative aldehyde dehydrogenase aldA OS=Staphyloco... [more]
ALDA_STAAC3.367e-2634.78Putative aldehyde dehydrogenase aldA OS=Staphyloco... [more]

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Properties
Property NameValue
Genbank descriptionC05802B04SK FerrChloL1 Citrus clementina cDNA clone C05802B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296726 ID=CX296726; Name=CX296726; organism=Citrus clementina; type=EST; length=724bp
GAGAGGACTAAATATTGTCTCACTTCAAACATTCCACTTGGTGTGGTTTT
GGCCATTCCACCATTCAACTATCCAGTCAATCTTGCCGTTTCCAAAATTG
CTCCTGCACTGATTGCTGGAAATTCCCTTGTGCTTAAGCCTCCTACTCAG
GGTGCTGTTGCTGCGCTTCACATGGTGCATTGCTTTCACTTGGCTGGTTT
TCCTAAAGGTCTTATAAGCTGTGTCACCGGGAAAGGTTCTGAGATTGGTG
ATTTCCTTACTATGCATCCTGCAGTGAACTGTATAAGCTTCACTGGTGGA
GACACTGGAATTTCAATCTCTAAGAAGGCTGGAATGATCCCTCTTCAGAT
GGAGTTGGGAGGCAAAGATGCTTGTATCGTGCTTGAGGATGCTGACCTTG
ATTTGGTTGCCGCAAACATAATAAAAGGAGGATTTTCTTACAGTGGTCAA
AGATGCACTGCAGTTAAGGTTGTCTTGGTGATGGAATCTGTAGCAGATTC
CCTGGTCGAGAAGGTTAAGGCTAAAGTGGTGAAACTGACAGTTGGCCCTC
CTGAAGAAAGCTGTGATATCACTCCAGTTGTGTCGGAATCATCTGCAAAT
TTCATTGAAGGGCTGGTTATGGATGCCAAACAGAAAGGAGCAACATTCTG
TCAAGAGTACAGGAGAGAAGGCAACCTCATCTGGCCCTTGTTGCTTGACA
ATGTTAGGCCCGATATGAGGATCG
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