CX296726

Overview
NameCX296726
Unique NameCX296726
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_SINMW (Betaine aldehyde dehydrogenase OS=Sinorhizobium medicae (strain WSM419) GN=betB PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.743e-26
Identity = 81/247 (32.79%), Postives = 117/247 (47.37%), Query Frame = 1
Query:   13 YCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISI--SKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGATFC------QEYRREGNLIWPLLLDNVRPDMRI 723
            +  T  +PLGV + I  +NYP  +A  K APAL+AGNS+V KP     + AL +      AG PKGL + V G  S  G  L  HP V  +S TG   TG  +  +  AG+  + MELGGK   IV +DADL+      + G F  +GQ C+    V V + +  S           + +G P +E+  + P+VS +  + +   +   K +GA              EG  I P +  +V  +M I
Sbjct:  135 FAYTKRVPLGVCVGIGAWNYPQQIACWKGAPALVAGNSMVFKPSENTPLGALKIAEILIEAGLPKGLYNVVQGDRS-TGPLLVNHPDVAKVSLTGSVPTGRKVYEAAAAGLRHVTMELGGKSPLIVFDDADLESAIGGAMLGNFYSTGQVCSNGTRVFVQKKIKQSFLARLKERTDAIVIGDPMDEATQLGPMVSTAQRDKVFSYIEKGKSEGARLVTGGGIPNNVSAEGTYIQPTVFADVTDEMTI 380          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ALDH2_LEITA (Aldehyde dehydrogenase, mitochondrial OS=Leishmania tarentolae GN=ALDH2 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.743e-26
Identity = 76/238 (31.93%), Postives = 124/238 (52.10%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTG----GDTGISISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEES-CDITPVVSESSANFIEGLVMDAKQKGATFCQEYRR---EGNLIWPLLLDNVRPDMRI 723
            P+GV   I P+N+P+ +A  K++PAL  GN++VLKP  Q  + A+ +      AG+P G+++ + G G+  G  +  H  V+ I+FTG    G   + ++ +  +  + +ELGGK A IV EDADL+  A       +  +GQ CTA   + V ESV D              VGP  ++  ++ P+VS+     + G + D  + GAT     ++   +G  + P +  +V+ DMRI
Sbjct:  155 PIGVCGQIIPWNFPLLMAAFKLSPALAMGNTVVLKPAEQTPLTAVRLGEMVMEAGYPDGVLNILPGFGATAGSEIARHMDVDKIAFTGSTAVGHQVMQMAAETNLKKVSLELGGKSALIVCEDADLEEAAEVATTRVYFNTGQVCTASSRIYVHESVYDEFVSRLRKNAEARKVGPGNDTGNNMGPLVSKKQHERVLGYIEDGVKAGATVVTGGKKIGDKGYFVQPTIFSDVKEDMRI 392          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ALDH1_ELEED (Aldehyde dehydrogenase, cytosolic 1 OS=Elephantulus edwardii GN=ALDH1 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.743e-26
Identity = 79/245 (32.24%), Postives = 121/245 (49.39%), Query Frame = 1
Query:   13 YCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISK---KAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGATF-C--QEYRREGNLIWPLLLDNVRPDMRI 723
            +  T + P+GV   I P+N P+ L   KI PAL  GN++++KP  Q  + ALH+      AGFP G+++ V G G   G  ++ H  V+ ++FTG  + G  I +   K+ +  + +ELG K+ CIV  DADLD       +G F+  GQ C A   + V E++ D               G P     +  P ++++  N I  L+   K++GA   C    +  +G  I P +  NV  DMRI
Sbjct:  152 FSYTRHEPIGVCGLIFPWNAPMILLACKIGPALCCGNTVIVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTEVGKMIQEAAAKSNLKRVTLELGAKNPCIVFADADLDSAVEFAHQGVFTNQGQSCIAASKLFVEEAIYDEFVQRSVERAKKYVFGNPLTPGVNHGPQINKAQHNKIMELIESGKKEGAKLECGGGPWGNKGYFIQPTVFSNVTDDMRI 396          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: AL1A2_TAEGU (Retinal dehydrogenase 2 OS=Taeniopygia guttata GN=ALDH1A2 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.743e-26
Identity = 82/245 (33.47%), Postives = 123/245 (50.20%), Query Frame = 1
Query:   13 YCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGATF-C--QEYRREGNLIWPLLLDNVRPDMRI 723
            +  T + P+GV   I P+N+P+ +   KIAPAL  GN++V+KP  Q  ++AL+M      AGFP G+++ + G G  +G  +  H  ++ I+FTG  + G  I + AG   L+   +ELGGK   I+  DADLD       +G F   GQ CTA   + V ES+ +              VG P + + +  P + +   N I  L+     +GA   C  +   R+G  I P +  NV  DMRI
Sbjct:  169 FTFTRHEPIGVCGQIIPWNFPLLMFAWKIAPALCCGNTVVIKPAEQTPLSALYMGALIKEAGFPPGVVNILPGFGPIVGAAIASHVGIDKIAFTGSTEVGKLIQEAAGRSNLKRVTLELGGKSPNIIFADADLDYAVEQAHQGVFFNQGQCCTAGSRIYVEESIYEEFVRKSVKRAKRKIVGSPFDPTTEQGPQIDKKQYNKILELIQSGITEGAKLECGGKGLGRKGFFIEPTVFSNVTDDMRI 413          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: AL1A2_RAT (Retinal dehydrogenase 2 OS=Rattus norvegicus GN=Aldh1a2 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 5.743e-26
Identity = 82/245 (33.47%), Postives = 122/245 (49.80%), Query Frame = 1
Query:   13 YCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGATF-C--QEYRREGNLIWPLLLDNVRPDMRI 723
            +  T + P+GV   I P+N+P+ +   KIAPAL  GN++V+KP  Q  ++AL+M      AGFP G+++ + G G   G  +  H  ++ I+FTG  + G  I + AG   L+   +ELGGK   I+  DADLD       +G F   GQ CTA   + V ES+ +              VG P + + +  P + +   N I  L+     +GA   C  +   R+G  I P +  NV  DMRI
Sbjct:  169 FTFTRHEPIGVCGQIIPWNFPLLMFTWKIAPALCCGNTVVIKPAEQTPLSALYMGALIKEAGFPPGVVNILPGYGPTAGAAIASHIGIDKIAFTGSTEVGKLIQEAAGRSNLKRVTLELGGKSPNIIFADADLDYAVEQAHQGVFFNQGQCCTAGSRIFVEESIYEEFVKRSVERAKRRIVGSPFDPTTEQGPQIDKKQYNKILELIQSGVAEGAKLECGGKGLGRKGFFIEPTVFSNVTDDMRI 413          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: AL1A1_SHEEP (Retinal dehydrogenase 1 OS=Ovis aries GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 5.743e-26
Identity = 82/245 (33.47%), Postives = 120/245 (48.98%), Query Frame = 1
Query:   13 YCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGATF-C--QEYRREGNLIWPLLLDNVRPDMRI 723
            +  T + P+GV   I P+N+P+ + + KI PAL  GN++V+KP  Q  + ALHM      AGFP G+++ V G G   G  ++ H  V+ ++FTG  + G  I + AG   L+   +ELGGK  CIV  DADLD       +G F + GQ C A   + V ES+ D              +G P        P + +     I  L+   K++GA   C    +  +G  I P +  +V  DMRI
Sbjct:  152 FTYTRSEPVGVCGQIIPWNFPLLMFLWKIGPALSCGNTVVVKPAEQTPLTALHMGSLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTEVGKLIKEAAGKSNLKRVSLELGGKSPCIVFADADLDNAVEFAHQGVFYHQGQCCIAASRLFVEESIYDEFVRRSVERAKKYVLGNPLTPGVSQGPQIDKEQYEKILDLIESGKKEGAKLECGGGPWGNKGYFIQPTVFSDVTDDMRI 396          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: AL1A1_BOVIN (Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 PE=2 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 5.743e-26
Identity = 82/245 (33.47%), Postives = 120/245 (48.98%), Query Frame = 1
Query:   13 YCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGATF-C--QEYRREGNLIWPLLLDNVRPDMRI 723
            +  T + P+GV   I P+N+P+ + + KI PAL  GN++V+KP  Q  + ALHM      AGFP G+++ V G G   G  ++ H  V+ ++FTG  + G  I + AG   L+   +ELGGK  CIV  DADLD       +G F + GQ C A   + V ES+ D              +G P        P + +     I  L+   K++GA   C    +  +G  I P +  +V  DMRI
Sbjct:  152 FTYTRSEPVGVCGQIIPWNFPLLMFLWKIGPALSCGNTVVVKPAEQTPLTALHMGSLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTEVGKLIKEAAGKSNLKRVSLELGGKSPCIVFADADLDNAVEFAHQGVFYHQGQCCIAASRLFVEESIYDEFVRRSVERAKKYVLGNPLTPGVSQGPQIDKEQYEKILDLIESGKKEGAKLECGGGPWGNKGYFIQPTVFSDVTDDMRI 396          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: AL1A2_MOUSE (Retinal dehydrogenase 2 OS=Mus musculus GN=Aldh1a2 PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 7.501e-26
Identity = 81/245 (33.06%), Postives = 122/245 (49.80%), Query Frame = 1
Query:   13 YCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGATF-C--QEYRREGNLIWPLLLDNVRPDMRI 723
            +  T + P+GV   I P+N+P+ +   KIAPAL  GN++V+KP  Q  ++AL+M      AGFP G+++ + G G   G  +  H  ++ I+FTG  + G  I + AG   L+   +ELGGK   I+  DADLD       +G F   GQ CTA   + V ES+ +              VG P + + +  P + +   N +  L+     +GA   C  +   R+G  I P +  NV  DMRI
Sbjct:  169 FTFTRHEPIGVCGQIIPWNFPLLMFTWKIAPALCCGNTVVIKPAEQTPLSALYMGALIKEAGFPPGVVNILPGYGPTAGAAIASHIGIDKIAFTGSTEVGKLIQEAAGRSNLKRVTLELGGKSPNIIFADADLDYAVEQAHQGVFFNQGQCCTAGSRIFVEESIYEEFVKRSVERAKRRIVGSPFDPTTEQGPQIDKKQYNKVLELIQSGVAEGAKLECGGKGLGRKGFFIEPTVFSNVTDDMRI 413          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: GABD2_MYCUA (Putative succinate-semialdehyde dehydrogenase [NADP+] 2 OS=Mycobacterium ulcerans (strain Agy99) GN=gabD2 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.796e-26
Identity = 77/209 (36.84%), Postives = 110/209 (52.63%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNC--ISFTGGD-TGISISKKAG--MIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEE-SCDITPVVSESSANFIEGLVMDAKQKGA 642
            P GVV  I P+NYP+ L  S   PALIAGN++VLKP +Q    AL      + AG P+ L + V G GS +G  +    A NC  + FTG   TG  ++++AG  +I    ELGGK+A IV    +LD VA    +  FS +GQ C +++ + V + +AD            + +G   + S D+  ++SE     + G V DA  KGA
Sbjct:  147 PKGVVGVISPWNYPMTLTASDSVPALIAGNAVVLKPDSQTPYCALACAELLYRAGLPRALYAIVPGPGSVVGTAI----ADNCDYLMFTGSSATGSRLAERAGRRLIGFSAELGGKNAMIVTRGVNLDKVAKAATRACFSNAGQLCISIERIYVEKDIADEFTRKFGDAVRSMKLGTAYDFSVDMGSLISEGQLKTVSGHVDDATAKGA 351          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ALDH5_BACSU (Putative aldehyde dehydrogenase yfmT OS=Bacillus subtilis GN=yfmT PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.796e-26
Identity = 81/237 (34.18%), Postives = 118/237 (49.79%), Query Frame = 1
Query:   31 IPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMV-HCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTG----GDTGISISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGATFCQEYRREGNLIWPLLLDNVRPDMRI 723
            +P GVV  I PFN+P  L++  +APAL AGN +VLKP  +  +    ++   F  AG P GL++ V    +EIGD    HP    ISFTG    G     ++ K    PL +ELGG  A IVLEDAD++      +   F++ GQ C +   VLV  S+ D            L VG P +    I P+++    + +   V  A ++GA   +     G ++ P +L +V+P M I
Sbjct:  142 VPAGVVGVISPFNFPFFLSMKSVAPALGAGNGVVLKPHEETPICGGTLIAKIFENAGIPAGLLNVVVTDIAEIGDSFVEHPVPRIISFTGSTKVGSYIGQLAMKHFKKPL-LELGGNSAFIVLEDADIEYAVNAAVFSRFTHQGQICMSANRVLVHSSIYDKFLELYQAKVESLKVGDPMDPDTIIGPLINSRQTDGLMKTVEQAIEEGAVPVKLGGFNGTIVEPTILKDVKPFMSI 377          
The following BLAST results are available for this feature:
BLAST of CX296726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
BETB_SINMW5.743e-2632.79Betaine aldehyde dehydrogenase OS=Sinorhizobium me... [more]
ALDH2_LEITA5.743e-2631.93Aldehyde dehydrogenase, mitochondrial OS=Leishmani... [more]
ALDH1_ELEED5.743e-2632.24Aldehyde dehydrogenase, cytosolic 1 OS=Elephantulu... [more]
AL1A2_TAEGU5.743e-2633.47Retinal dehydrogenase 2 OS=Taeniopygia guttata GN=... [more]
AL1A2_RAT5.743e-2633.47Retinal dehydrogenase 2 OS=Rattus norvegicus GN=Al... [more]
AL1A1_SHEEP5.743e-2633.47Retinal dehydrogenase 1 OS=Ovis aries GN=ALDH1A1 P... [more]
AL1A1_BOVIN5.743e-2633.47Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 P... [more]
AL1A2_MOUSE7.501e-2633.06Retinal dehydrogenase 2 OS=Mus musculus GN=Aldh1a2... [more]
GABD2_MYCUA9.796e-2636.84Putative succinate-semialdehyde dehydrogenase [NAD... [more]
ALDH5_BACSU9.796e-2634.18Putative aldehyde dehydrogenase yfmT OS=Bacillus s... [more]

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Properties
Property NameValue
Genbank descriptionC05802B04SK FerrChloL1 Citrus clementina cDNA clone C05802B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296726 ID=CX296726; Name=CX296726; organism=Citrus clementina; type=EST; length=724bp
GAGAGGACTAAATATTGTCTCACTTCAAACATTCCACTTGGTGTGGTTTT
GGCCATTCCACCATTCAACTATCCAGTCAATCTTGCCGTTTCCAAAATTG
CTCCTGCACTGATTGCTGGAAATTCCCTTGTGCTTAAGCCTCCTACTCAG
GGTGCTGTTGCTGCGCTTCACATGGTGCATTGCTTTCACTTGGCTGGTTT
TCCTAAAGGTCTTATAAGCTGTGTCACCGGGAAAGGTTCTGAGATTGGTG
ATTTCCTTACTATGCATCCTGCAGTGAACTGTATAAGCTTCACTGGTGGA
GACACTGGAATTTCAATCTCTAAGAAGGCTGGAATGATCCCTCTTCAGAT
GGAGTTGGGAGGCAAAGATGCTTGTATCGTGCTTGAGGATGCTGACCTTG
ATTTGGTTGCCGCAAACATAATAAAAGGAGGATTTTCTTACAGTGGTCAA
AGATGCACTGCAGTTAAGGTTGTCTTGGTGATGGAATCTGTAGCAGATTC
CCTGGTCGAGAAGGTTAAGGCTAAAGTGGTGAAACTGACAGTTGGCCCTC
CTGAAGAAAGCTGTGATATCACTCCAGTTGTGTCGGAATCATCTGCAAAT
TTCATTGAAGGGCTGGTTATGGATGCCAAACAGAAAGGAGCAACATTCTG
TCAAGAGTACAGGAGAGAAGGCAACCTCATCTGGCCCTTGTTGCTTGACA
ATGTTAGGCCCGATATGAGGATCG
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