CX296726

Overview
NameCX296726
Unique NameCX296726
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ABDH_SHIFL (Gamma-aminobutyraldehyde dehydrogenase OS=Shigella flexneri GN=ydcW PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.723e-25
Identity = 78/206 (37.86%), Postives = 109/206 (52.91%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGIS-ISKKAGMIP-LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVG-PPEESCDITPVVSESSANFIEGLVMDAKQKG 639
            PLGVV +I P+NYP+ +A  K+APAL AGN +VLKP     + AL +        FP G+I+ + G+G  +GD LT HP V  +S TG   TG   IS  A  I    MELGGK   IV +DAD++ V   +   G+  +GQ CTA   +   + + D+L          L  G P +ES ++ P+ S +    +   V +AK  G
Sbjct:  138 PLGVVASIAPWNYPLMMAAWKLAPALAAGNCVVLKPSEITPLTALKLAELAKDI-FPAGVINILFGRGKTVGDPLTGHPKVRMVSLTGSIATGEHIISHTASSIKRTHMELGGKAPVIVFDDADIEAVVEGVRTFGYYNAGQDCTAACRIYAQKGIYDTLVEKLGAAVATLKSGAPDDESTELGPLSSLAHLERVSKAVEEAKATG 342          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ABDH_SHIF8 (Gamma-aminobutyraldehyde dehydrogenase OS=Shigella flexneri serotype 5b (strain 8401) GN=ydcW PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.723e-25
Identity = 78/206 (37.86%), Postives = 109/206 (52.91%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGIS-ISKKAGMIP-LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVG-PPEESCDITPVVSESSANFIEGLVMDAKQKG 639
            PLGVV +I P+NYP+ +A  K+APAL AGN +VLKP     + AL +        FP G+I+ + G+G  +GD LT HP V  +S TG   TG   IS  A  I    MELGGK   IV +DAD++ V   +   G+  +GQ CTA   +   + + D+L          L  G P +ES ++ P+ S +    +   V +AK  G
Sbjct:  138 PLGVVASIAPWNYPLMMAAWKLAPALAAGNCVVLKPSEITPLTALKLAELAKDI-FPAGVINILFGRGKTVGDPLTGHPKVRMVSLTGSIATGEHIISHTASSIKRTHMELGGKAPVIVFDDADIEAVVEGVRTFGYYNAGQDCTAACRIYAQKGIYDTLVEKLGAAVATLKSGAPDDESTELGPLSSLAHLERVSKAVEEAKATG 342          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ABDH_SALTY (Gamma-aminobutyraldehyde dehydrogenase OS=Salmonella typhimurium GN=ydcW PE=3 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 3.723e-25
Identity = 75/203 (36.95%), Postives = 107/203 (52.71%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAG--MIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPE-ESCDITPVVSESSANFIEGLVMDAK 630
            P+GVV +I P+NYP+ +A  K+APAL AGN +V+KP     + AL +        FP G+++ + G+G  +GD LT H  V  +S TG   TG  I +     +    MELGGK   IV +DADLD VA  +   GF  +GQ CTA   +     + D+L          L +G PE ES ++ P+ S +    +   V +AK
Sbjct:  138 PIGVVASIAPWNYPLMMAAWKLAPALAAGNCVVIKPSEITPLTALKLA-VLAKDIFPPGVLNVLFGRGQTVGDVLTGHEKVRMVSLTGSIATGEHILRHTAPAIKRTHMELGGKAPVIVFDDADLDAVAQGVRTFGFYNAGQDCTAACRIYAQRGIYDALVEKLGNAVSSLKMGAPEDESTELGPLSSLAHLKRVTAAVEEAK 339          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ABDH_ECOSE (Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli (strain SE11) GN=ydcW PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.723e-25
Identity = 78/206 (37.86%), Postives = 109/206 (52.91%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGIS-ISKKAGMIP-LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVG-PPEESCDITPVVSESSANFIEGLVMDAKQKG 639
            PLGVV +I P+NYP+ +A  K+APAL AGN +VLKP     + AL +        FP G+I+ + G+G  +GD LT HP V  +S TG   TG   IS  A  I    MELGGK   IV +DAD++ V   +   G+  +GQ CTA   +   + + D+L          L  G P +ES ++ P+ S +    +   V +AK  G
Sbjct:  138 PLGVVASIAPWNYPLMMAAWKLAPALAAGNCVVLKPSEITPLTALKLAELAKDI-FPAGVINVLFGRGKTVGDPLTGHPKVRMVSLTGSIATGEHIISHTASSIKRTHMELGGKAPVIVFDDADIEAVVEGVRTFGYYNAGQDCTAACRIYAQKGIYDTLVEKLGAAVATLKSGAPDDESTELGPLSSLAHLERVSKAVEEAKATG 342          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ABDH_ECOLC (Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=ydcW PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.723e-25
Identity = 78/206 (37.86%), Postives = 109/206 (52.91%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGIS-ISKKAGMIP-LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVG-PPEESCDITPVVSESSANFIEGLVMDAKQKG 639
            PLGVV +I P+NYP+ +A  K+APAL AGN +VLKP     + AL +        FP G+I+ + G+G  +GD LT HP V  +S TG   TG   IS  A  I    MELGGK   IV +DAD++ V   +   G+  +GQ CTA   +   + + D+L          L  G P +ES ++ P+ S +    +   V +AK  G
Sbjct:  138 PLGVVASIAPWNYPLMMAAWKLAPALAAGNCVVLKPSEITPLTALKLAELAKDI-FPAGVINILFGRGKTVGDPLTGHPKVRMVSLTGSIATGEHIISHTASSIKRTHMELGGKAPVIVFDDADIEAVVEGVRTFGYYNAGQDCTAACRIYAQKGIYDTLVEKLGAAVATLKSGAPDDESTELGPLSSLAHLERVSKAVEEAKATG 342          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ABDH_ECOHS (Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=ydcW PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.723e-25
Identity = 78/206 (37.86%), Postives = 109/206 (52.91%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGIS-ISKKAGMIP-LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVG-PPEESCDITPVVSESSANFIEGLVMDAKQKG 639
            PLGVV +I P+NYP+ +A  K+APAL AGN +VLKP     + AL +        FP G+I+ + G+G  +GD LT HP V  +S TG   TG   IS  A  I    MELGGK   IV +DAD++ V   +   G+  +GQ CTA   +   + + D+L          L  G P +ES ++ P+ S +    +   V +AK  G
Sbjct:  138 PLGVVASIAPWNYPLMMAAWKLAPALAAGNCVVLKPSEITPLTALKLAELAKDI-FPAGVINILFGRGKTVGDPLTGHPKVRMVSLTGSIATGEHIISHTASSIKRTHMELGGKAPVIVFDDADIEAVVEGVRTFGYYNAGQDCTAACRIYAQKGIYDTLVEKLGAAVATLKSGAPDDESTELGPLSSLAHLERVSKAVEEAKATG 342          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ABDH_ECO8A (Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli O8 (strain IAI1) GN=ydcW PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.723e-25
Identity = 78/206 (37.86%), Postives = 109/206 (52.91%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGIS-ISKKAGMIP-LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVG-PPEESCDITPVVSESSANFIEGLVMDAKQKG 639
            PLGVV +I P+NYP+ +A  K+APAL AGN +VLKP     + AL +        FP G+I+ + G+G  +GD LT HP V  +S TG   TG   IS  A  I    MELGGK   IV +DAD++ V   +   G+  +GQ CTA   +   + + D+L          L  G P +ES ++ P+ S +    +   V +AK  G
Sbjct:  138 PLGVVASIAPWNYPLMMAAWKLAPALAAGNCVVLKPSEITPLTALKLAELAKDI-FPAGVINVLFGRGKTVGDPLTGHPKVRMVSLTGSIATGEHIISHTASSIKRTHMELGGKAPVIVFDDADIEAVVEGVRTFGYYNAGQDCTAACRIYAQKGIYDTLVEKLGAAVATLKSGAPDDESTELGPLSSLAHLERVSKAVEEAKATG 342          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ABDH_ECO55 (Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli (strain 55989 / EAEC) GN=ydcW PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.723e-25
Identity = 78/206 (37.86%), Postives = 109/206 (52.91%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGIS-ISKKAGMIP-LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVG-PPEESCDITPVVSESSANFIEGLVMDAKQKG 639
            PLGVV +I P+NYP+ +A  K+APAL AGN +VLKP     + AL +        FP G+I+ + G+G  +GD LT HP V  +S TG   TG   IS  A  I    MELGGK   IV +DAD++ V   +   G+  +GQ CTA   +   + + D+L          L  G P +ES ++ P+ S +    +   V +AK  G
Sbjct:  138 PLGVVASIAPWNYPLMMAAWKLAPALAAGNCVVLKPSEITPLTALKLAELAKDI-FPAGVINVLFGRGKTVGDPLTGHPKVRMVSLTGSIATGEHIISHTASSIKRTHMELGGKAPVIVFDDADIEAVVEGVRTFGYYNAGQDCTAACRIYAQKGIYDTLVEKLGAAVATLKSGAPDDESTELGPLSSLAHLERVSKAVEEAKATG 342          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ABDH_ECO24 (Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=ydcW PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.723e-25
Identity = 78/206 (37.86%), Postives = 109/206 (52.91%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGIS-ISKKAGMIP-LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVG-PPEESCDITPVVSESSANFIEGLVMDAKQKG 639
            PLGVV +I P+NYP+ +A  K+APAL AGN +VLKP     + AL +        FP G+I+ + G+G  +GD LT HP V  +S TG   TG   IS  A  I    MELGGK   IV +DAD++ V   +   G+  +GQ CTA   +   + + D+L          L  G P +ES ++ P+ S +    +   V +AK  G
Sbjct:  138 PLGVVASIAPWNYPLMMAAWKLAPALAAGNCVVLKPSEITPLTALKLAELAKDI-FPAGVINVLFGRGKTVGDPLTGHPKVRMVSLTGSIATGEHIISHTASSIKRTHMELGGKAPVIVFDDADIEAVVEGVRTFGYYNAGQDCTAACRIYAQKGIYDTLVEKLGAAVATLKSGAPDDESTELGPLSSLAHLERVSKAVEEAKATG 342          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_ECOL5 (Betaine aldehyde dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=betB PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.862e-25
Identity = 62/155 (40.00%), Postives = 88/155 (56.77%), Query Frame = 1
Query:    7 TKYCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGDTG----ISISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCT 459
            T +  T   PLGVV  I  +NYP+ +A+ K APAL AGN+++ KP     + AL +   +  AG P G+ + + G G+E G +LT HP +  +SFTGG       ++ S  + +  + MELGGK   IV +DADL+L A   +   F  SGQ CT
Sbjct:  133 TSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYSEAGLPDGVFNVLPGVGAETGQYLTEHPGIAKVSFTGGVASGKKVMANSAASSLKEVTMELGGKSPLIVFDDADLELAADIAMMANFFSSGQVCT 287          
The following BLAST results are available for this feature:
BLAST of CX296726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ABDH_SHIFL3.723e-2537.86Gamma-aminobutyraldehyde dehydrogenase OS=Shigella... [more]
ABDH_SHIF83.723e-2537.86Gamma-aminobutyraldehyde dehydrogenase OS=Shigella... [more]
ABDH_SALTY3.723e-2536.95Gamma-aminobutyraldehyde dehydrogenase OS=Salmonel... [more]
ABDH_ECOSE3.723e-2537.86Gamma-aminobutyraldehyde dehydrogenase OS=Escheric... [more]
ABDH_ECOLC3.723e-2537.86Gamma-aminobutyraldehyde dehydrogenase OS=Escheric... [more]
ABDH_ECOHS3.723e-2537.86Gamma-aminobutyraldehyde dehydrogenase OS=Escheric... [more]
ABDH_ECO8A3.723e-2537.86Gamma-aminobutyraldehyde dehydrogenase OS=Escheric... [more]
ABDH_ECO553.723e-2537.86Gamma-aminobutyraldehyde dehydrogenase OS=Escheric... [more]
ABDH_ECO243.723e-2537.86Gamma-aminobutyraldehyde dehydrogenase OS=Escheric... [more]
BETB_ECOL54.862e-2540.00Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]

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Properties
Property NameValue
Genbank descriptionC05802B04SK FerrChloL1 Citrus clementina cDNA clone C05802B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296726 ID=CX296726; Name=CX296726; organism=Citrus clementina; type=EST; length=724bp
GAGAGGACTAAATATTGTCTCACTTCAAACATTCCACTTGGTGTGGTTTT
GGCCATTCCACCATTCAACTATCCAGTCAATCTTGCCGTTTCCAAAATTG
CTCCTGCACTGATTGCTGGAAATTCCCTTGTGCTTAAGCCTCCTACTCAG
GGTGCTGTTGCTGCGCTTCACATGGTGCATTGCTTTCACTTGGCTGGTTT
TCCTAAAGGTCTTATAAGCTGTGTCACCGGGAAAGGTTCTGAGATTGGTG
ATTTCCTTACTATGCATCCTGCAGTGAACTGTATAAGCTTCACTGGTGGA
GACACTGGAATTTCAATCTCTAAGAAGGCTGGAATGATCCCTCTTCAGAT
GGAGTTGGGAGGCAAAGATGCTTGTATCGTGCTTGAGGATGCTGACCTTG
ATTTGGTTGCCGCAAACATAATAAAAGGAGGATTTTCTTACAGTGGTCAA
AGATGCACTGCAGTTAAGGTTGTCTTGGTGATGGAATCTGTAGCAGATTC
CCTGGTCGAGAAGGTTAAGGCTAAAGTGGTGAAACTGACAGTTGGCCCTC
CTGAAGAAAGCTGTGATATCACTCCAGTTGTGTCGGAATCATCTGCAAAT
TTCATTGAAGGGCTGGTTATGGATGCCAAACAGAAAGGAGCAACATTCTG
TCAAGAGTACAGGAGAGAAGGCAACCTCATCTGGCCCTTGTTGCTTGACA
ATGTTAGGCCCGATATGAGGATCG
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