CX296726

Overview
NameCX296726
Unique NameCX296726
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ROCA_STAAN (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain N315) GN=rocA PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.375e-24
Identity = 65/222 (29.28%), Postives = 113/222 (50.90%), Query Frame = 1 
Query:    1 ERTKYCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIP--------LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEESCDITPVVSESSANFIEGLVMDAKQKG 639
            E  KY   S   +G  + IPP+N+P  +        ++AGN+++LKP       A  ++     AG PKG+++ V G   EIGD+L  H   + ++FTG   TG  I +++ ++         +  E+GGKDA +V E+ D D+ A  I+   F +SGQ+C+A    +V + V D +          LT+G   ++  + PV+++   + I+  +   K++G
Sbjct:  163 EHNKYFYKS---IGTGVTIPPWNFPFAIMAGTTLAPVVAGNTVLLKPAEDTPYIAYKLMEILEEAGLPKGVVNFVPGDPKEIGDYLVDHKDTHFVTFTGSRATGTRIYERSAVVQEGQNFLKRVIAEMGGKDAIVVDENIDTDMAAEAIVTSAFGFSGQKCSACSRAIVHKDVYDEVLEKSIKLTKELTLGNTVDNTYMGPVINKKQFDKIKNYIEIGKEEG 381
[Close]
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ROCA_STAAM (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rocA PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.375e-24
Identity = 65/222 (29.28%), Postives = 113/222 (50.90%), Query Frame = 1 
Query:    1 ERTKYCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIP--------LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEESCDITPVVSESSANFIEGLVMDAKQKG 639
            E  KY   S   +G  + IPP+N+P  +        ++AGN+++LKP       A  ++     AG PKG+++ V G   EIGD+L  H   + ++FTG   TG  I +++ ++         +  E+GGKDA +V E+ D D+ A  I+   F +SGQ+C+A    +V + V D +          LT+G   ++  + PV+++   + I+  +   K++G
Sbjct:  163 EHNKYFYKS---IGTGVTIPPWNFPFAIMAGTTLAPVVAGNTVLLKPAEDTPYIAYKLMEILEEAGLPKGVVNFVPGDPKEIGDYLVDHKDTHFVTFTGSRATGTRIYERSAVVQEGQNFLKRVIAEMGGKDAIVVDENIDTDMAAEAIVTSAFGFSGQKCSACSRAIVHKDVYDEVLEKSIKLTKELTLGNTVDNTYMGPVINKKQFDKIKNYIEIGKEEG 381
[Close]
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ROCA_STAAE (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain Newman) GN=rocA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.375e-24
Identity = 65/222 (29.28%), Postives = 113/222 (50.90%), Query Frame = 1 
Query:    1 ERTKYCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIP--------LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEESCDITPVVSESSANFIEGLVMDAKQKG 639
            E  KY   S   +G  + IPP+N+P  +        ++AGN+++LKP       A  ++     AG PKG+++ V G   EIGD+L  H   + ++FTG   TG  I +++ ++         +  E+GGKDA +V E+ D D+ A  I+   F +SGQ+C+A    +V + V D +          LT+G   ++  + PV+++   + I+  +   K++G
Sbjct:  163 EHNKYFYKS---IGTGVTIPPWNFPFAIMAGTTLAPVVAGNTVLLKPAEDTPYIAYKLMEILEEAGLPKGVVNFVPGDPKEIGDYLVDHKDTHFVTFTGSRATGTRIYERSAVVQEGQNFLKRVIAEMGGKDAIVVDENIDTDMAAEAIVTSAFGFSGQKCSACSRAIVHKDVYDEVLEKSIKLTKELTLGNTVDNTYMGPVINKKQFDKIKNYIEIGKEEG 381
[Close]
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ROCA_STAAC (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain COL) GN=rocA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.375e-24
Identity = 65/222 (29.28%), Postives = 113/222 (50.90%), Query Frame = 1 
Query:    1 ERTKYCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIP--------LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEESCDITPVVSESSANFIEGLVMDAKQKG 639
            E  KY   S   +G  + IPP+N+P  +        ++AGN+++LKP       A  ++     AG PKG+++ V G   EIGD+L  H   + ++FTG   TG  I +++ ++         +  E+GGKDA +V E+ D D+ A  I+   F +SGQ+C+A    +V + V D +          LT+G   ++  + PV+++   + I+  +   K++G
Sbjct:  163 EHNKYFYKS---IGTGVTIPPWNFPFAIMAGTTLAPVVAGNTVLLKPAEDTPYIAYKLMEILEEAGLPKGVVNFVPGDPKEIGDYLVDHKDTHFVTFTGSRATGTRIYERSAVVQEGQNFLKRVIAEMGGKDAIVVDENIDTDMAAEAIVTSAFGFSGQKCSACSRAIVHKDVYDEVLEKSIKLTKELTLGNTVDNTYMGPVINKKQFDKIKNYIEIGKEEG 381
[Close]
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ROCA_STAAB (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=rocA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.375e-24
Identity = 65/222 (29.28%), Postives = 113/222 (50.90%), Query Frame = 1 
Query:    1 ERTKYCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIP--------LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEESCDITPVVSESSANFIEGLVMDAKQKG 639
            E  KY   S   +G  + IPP+N+P  +        ++AGN+++LKP       A  ++     AG PKG+++ V G   EIGD+L  H   + ++FTG   TG  I +++ ++         +  E+GGKDA +V E+ D D+ A  I+   F +SGQ+C+A    +V + V D +          LT+G   ++  + PV+++   + I+  +   K++G
Sbjct:  163 EHNKYFYKS---IGTGVTIPPWNFPFAIMAGTTLAPVVAGNTVLLKPAEDTPYIAYKLMEILEEAGLPKGVVNFVPGDPKEIGDYLVDHKDTHFVTFTGSRATGTRIYERSAVVQEGQNFLKRVIAEMGGKDAIVVDENIDTDMAAEAIVTSAFGFSGQKCSACSRAIVHKDVYDEVLEKSIKLTKELTLGNTVDNTYMGPVINKKQFDKIKNYIEIGKEEG 381
[Close]
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ROCA_STAA9 (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain JH9) GN=rocA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.375e-24
Identity = 65/222 (29.28%), Postives = 113/222 (50.90%), Query Frame = 1 
Query:    1 ERTKYCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIP--------LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEESCDITPVVSESSANFIEGLVMDAKQKG 639
            E  KY   S   +G  + IPP+N+P  +        ++AGN+++LKP       A  ++     AG PKG+++ V G   EIGD+L  H   + ++FTG   TG  I +++ ++         +  E+GGKDA +V E+ D D+ A  I+   F +SGQ+C+A    +V + V D +          LT+G   ++  + PV+++   + I+  +   K++G
Sbjct:  163 EHNKYFYKS---IGTGVTIPPWNFPFAIMAGTTLAPVVAGNTVLLKPAEDTPYIAYKLMEILEEAGLPKGVVNFVPGDPKEIGDYLVDHKDTHFVTFTGSRATGTRIYERSAVVQEGQNFLKRVIAEMGGKDAIVVDENIDTDMAAEAIVTSAFGFSGQKCSACSRAIVHKDVYDEVLEKSIKLTKELTLGNTVDNTYMGPVINKKQFDKIKNYIEIGKEEG 381
[Close]
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ROCA_STAA8 (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain NCTC 8325) GN=rocA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.375e-24
Identity = 65/222 (29.28%), Postives = 113/222 (50.90%), Query Frame = 1 
Query:    1 ERTKYCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIP--------LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEESCDITPVVSESSANFIEGLVMDAKQKG 639
            E  KY   S   +G  + IPP+N+P  +        ++AGN+++LKP       A  ++     AG PKG+++ V G   EIGD+L  H   + ++FTG   TG  I +++ ++         +  E+GGKDA +V E+ D D+ A  I+   F +SGQ+C+A    +V + V D +          LT+G   ++  + PV+++   + I+  +   K++G
Sbjct:  163 EHNKYFYKS---IGTGVTIPPWNFPFAIMAGTTLAPVVAGNTVLLKPAEDTPYIAYKLMEILEEAGLPKGVVNFVPGDPKEIGDYLVDHKDTHFVTFTGSRATGTRIYERSAVVQEGQNFLKRVIAEMGGKDAIVVDENIDTDMAAEAIVTSAFGFSGQKCSACSRAIVHKDVYDEVLEKSIKLTKELTLGNTVDNTYMGPVINKKQFDKIKNYIEIGKEEG 381
[Close]
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ROCA_STAA3 (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain USA300) GN=rocA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.375e-24
Identity = 65/222 (29.28%), Postives = 113/222 (50.90%), Query Frame = 1 
Query:    1 ERTKYCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIP--------LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEESCDITPVVSESSANFIEGLVMDAKQKG 639
            E  KY   S   +G  + IPP+N+P  +        ++AGN+++LKP       A  ++     AG PKG+++ V G   EIGD+L  H   + ++FTG   TG  I +++ ++         +  E+GGKDA +V E+ D D+ A  I+   F +SGQ+C+A    +V + V D +          LT+G   ++  + PV+++   + I+  +   K++G
Sbjct:  163 EHNKYFYKS---IGTGVTIPPWNFPFAIMAGTTLAPVVAGNTVLLKPAEDTPYIAYKLMEILEEAGLPKGVVNFVPGDPKEIGDYLVDHKDTHFVTFTGSRATGTRIYERSAVVQEGQNFLKRVIAEMGGKDAIVVDENIDTDMAAEAIVTSAFGFSGQKCSACSRAIVHKDVYDEVLEKSIKLTKELTLGNTVDNTYMGPVINKKQFDKIKNYIEIGKEEG 381
[Close]
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ROCA_STAA2 (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain JH1) GN=rocA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.375e-24
Identity = 65/222 (29.28%), Postives = 113/222 (50.90%), Query Frame = 1 
Query:    1 ERTKYCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIP--------LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEESCDITPVVSESSANFIEGLVMDAKQKG 639
            E  KY   S   +G  + IPP+N+P  +        ++AGN+++LKP       A  ++     AG PKG+++ V G   EIGD+L  H   + ++FTG   TG  I +++ ++         +  E+GGKDA +V E+ D D+ A  I+   F +SGQ+C+A    +V + V D +          LT+G   ++  + PV+++   + I+  +   K++G
Sbjct:  163 EHNKYFYKS---IGTGVTIPPWNFPFAIMAGTTLAPVVAGNTVLLKPAEDTPYIAYKLMEILEEAGLPKGVVNFVPGDPKEIGDYLVDHKDTHFVTFTGSRATGTRIYERSAVVQEGQNFLKRVIAEMGGKDAIVVDENIDTDMAAEAIVTSAFGFSGQKCSACSRAIVHKDVYDEVLEKSIKLTKELTLGNTVDNTYMGPVINKKQFDKIKNYIEIGKEEG 381
[Close]
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ROCA_STAA1 (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=rocA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.375e-24
Identity = 65/222 (29.28%), Postives = 113/222 (50.90%), Query Frame = 1 
Query:    1 ERTKYCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIP--------LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEESCDITPVVSESSANFIEGLVMDAKQKG 639
            E  KY   S   +G  + IPP+N+P  +        ++AGN+++LKP       A  ++     AG PKG+++ V G   EIGD+L  H   + ++FTG   TG  I +++ ++         +  E+GGKDA +V E+ D D+ A  I+   F +SGQ+C+A    +V + V D +          LT+G   ++  + PV+++   + I+  +   K++G
Sbjct:  163 EHNKYFYKS---IGTGVTIPPWNFPFAIMAGTTLAPVVAGNTVLLKPAEDTPYIAYKLMEILEEAGLPKGVVNFVPGDPKEIGDYLVDHKDTHFVTFTGSRATGTRIYERSAVVQEGQNFLKRVIAEMGGKDAIVVDENIDTDMAAEAIVTSAFGFSGQKCSACSRAIVHKDVYDEVLEKSIKLTKELTLGNTVDNTYMGPVINKKQFDKIKNYIEIGKEEG 381
The following BLAST results are available for this feature:
BLAST of CX296726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ROCA_STAAN5.375e-2429.281-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
ROCA_STAAM5.375e-2429.281-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
ROCA_STAAE5.375e-2429.281-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
ROCA_STAAC5.375e-2429.281-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
ROCA_STAAB5.375e-2429.281-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
ROCA_STAA95.375e-2429.281-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
ROCA_STAA85.375e-2429.281-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
ROCA_STAA35.375e-2429.281-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
ROCA_STAA25.375e-2429.281-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
ROCA_STAA15.375e-2429.281-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]

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Properties
Property NameValue
Genbank descriptionC05802B04SK FerrChloL1 Citrus clementina cDNA clone C05802B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296726 ID=CX296726; Name=CX296726; organism=Citrus clementina; type=EST; length=724bp
GAGAGGACTAAATATTGTCTCACTTCAAACATTCCACTTGGTGTGGTTTT
GGCCATTCCACCATTCAACTATCCAGTCAATCTTGCCGTTTCCAAAATTG
CTCCTGCACTGATTGCTGGAAATTCCCTTGTGCTTAAGCCTCCTACTCAG
GGTGCTGTTGCTGCGCTTCACATGGTGCATTGCTTTCACTTGGCTGGTTT
TCCTAAAGGTCTTATAAGCTGTGTCACCGGGAAAGGTTCTGAGATTGGTG
ATTTCCTTACTATGCATCCTGCAGTGAACTGTATAAGCTTCACTGGTGGA
GACACTGGAATTTCAATCTCTAAGAAGGCTGGAATGATCCCTCTTCAGAT
GGAGTTGGGAGGCAAAGATGCTTGTATCGTGCTTGAGGATGCTGACCTTG
ATTTGGTTGCCGCAAACATAATAAAAGGAGGATTTTCTTACAGTGGTCAA
AGATGCACTGCAGTTAAGGTTGTCTTGGTGATGGAATCTGTAGCAGATTC
CCTGGTCGAGAAGGTTAAGGCTAAAGTGGTGAAACTGACAGTTGGCCCTC
CTGAAGAAAGCTGTGATATCACTCCAGTTGTGTCGGAATCATCTGCAAAT
TTCATTGAAGGGCTGGTTATGGATGCCAAACAGAAAGGAGCAACATTCTG
TCAAGAGTACAGGAGAGAAGGCAACCTCATCTGGCCCTTGTTGCTTGACA
ATGTTAGGCCCGATATGAGGATCG
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