CX296726

Overview
NameCX296726
Unique NameCX296726
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: GABD1_MYCBO (Succinate-semialdehyde dehydrogenase [NADP+] 1 OS=Mycobacterium bovis GN=gabD1 PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 9.489e-21
Identity = 74/237 (31.22%), Postives = 109/237 (45.99%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGD-TGISISKKAG--MIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVG-PPEESCDITPVVSESSANFIEGLVMDAKQKGATF-CQEYR--REGNLIWPLLLDNVRPDMRI 723
            PLGV+LA+ P+N+P+  AV   APAL+AGN  +LK  +     AL++       GFP G    +      + + +   P V   + TG +  G S+   AG  + P  +ELGG D  IV+  ADLD   +  + G    +GQ C A K  +V   + D            L VG P +   D+ P+ +E   N +   V DA   GA   C   R  R G    P ++ ++  DM +
Sbjct:  123 PLGVILAVMPWNFPLWQAVRFAAPALMAGNVGLLKHASNVPQCALYLADVIARGGFPDGCFQTLLVSSGAV-EAILRDPRVAAATLTGSEPAGQSVGAIAGNEIKPTVLELGGSDPFIVMPSADLDAAVSTAVTGRVQNNGQSCIAAKRFIVHADIYDDFVDKFVARMAALRVGDPTDPDTDVGPLATEQGRNEVAKQVEDAAAAGAVIRCGGKRLDRPGWFYPPTVITDISKDMAL 358          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: AL1B1_BOVIN (Aldehyde dehydrogenase X, mitochondrial (Fragment) OS=Bos taurus GN=ALDH1B1 PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 9.489e-21
Identity = 75/245 (30.61%), Postives = 111/245 (45.31%), Query Frame = 1
Query:   13 YCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGATFC---QEYRREGNLIWPLLLDNVRPDMRI 723
            +C T + P+GV   I P+N+P+ +   K+A AL  GN++V K   Q   +AL++       G P GL++ VTG G   G  +  H  +  ++FTG    G  I K AG   L+   +ELGGK   IVL DAD+D       +  F   GQ C       + ES+ D              VG P +      P V       I G +   +++GA      + +R++   I P +   V+ DMRI
Sbjct:  162 FCFTRHEPVGVCCQIIPWNFPLVMQSWKLALALAMGNTVVTKVAEQTPFSALYLASLIKEVGLPPGLVNIVTGYGPTAGAAIAHHMDIGKVAFTGSTKVGHLIQKAAGNSSLKRVTLELGGKSLSIVLADADMDHAVEQRQEALFFNMGQCCCPGSWTFIEESIYDEFLERTVEKAKQRRVGNPFDLDTQQGPQVDRERFERILGYIQLGQKEGAKLLCGGEHFRQQCFFIKPTVFGGVQDDMRI 406          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ALDH4_BACSU (Putative aldehyde dehydrogenase dhaS OS=Bacillus subtilis GN=dhaS PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.239e-20
Identity = 75/241 (31.12%), Postives = 115/241 (47.72%), Query Frame = 1
Query:   22 TSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKA--GMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGA---TFCQEYRREGNLIWPLLLDNVRPDMRI 723
            T + P+GVV  I P+N+P+ +A+ K+  AL  G ++VLKP  Q  ++AL++      AGFP G+I+ + G G + G+ LT H AV+ I+FTG  + G  I   A   +  + +ELGGK   I+L DA+L       + G     GQ C A   V + +   D +          L  G    +   I P+VS+     +   +   K +GA   T        G  + P +  NV  +M I
Sbjct:  153 TRHEPVGVVGQIIPWNFPLLMAMWKMGAALATGCTIVLKPAEQTPLSALYLAELIDQAGFPAGVINIIPGFGEDAGEALTNHEAVDKIAFTGSTEIGKKIMSTAAKSIKRVTLELGGKSPNILLPDANLKKAIPGALNGVMFNQGQVCCAGSRVFIHKDQYDEVVDEMASYAESLRQGAGLHKDTQIGPLVSKEQHERVLSYIQKGKDEGAKAVTGGSCPFEAGYFVAPTVFANVEDEMTI 393          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: AL2B4_ARATH (Aldehyde dehydrogenase family 2 member B4, mitochondrial OS=Arabidopsis thaliana GN=ALDH2B4 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.239e-20
Identity = 74/242 (30.58%), Postives = 111/242 (45.87%), Query Frame = 1
Query:   22 TSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTG---ISISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGATF-C--QEYRREGNLIWPLLLDNVRPDMRI 723
            T + P+GV   I P+N+P+ +   K+ PAL  GN++VLK   Q  + A +    F  AG P G+++ V+G G+  G  L  H  V+ ++FTG  DTG   + ++  + + P+ +ELGGK   IV EDAD+D          F   GQ C A     V E V D              VG P  +  +  P +       +   +    +  AT  C   +   +G  I P +  NV+ DM I
Sbjct:  191 TLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLTAFYAGKLFLEAGLPPGVLNIVSGFGATAGAALASHMDVDKLAFTGSTDTGKVILGLAANSNLKPVTLELGGKSPFIVFEDADIDKAVELAHFALFFNQGQCCCAGSRTFVHEKVYDEFVEKSKARALKRVVGDPFRKGIEQGPQIDLKQFEKVMKYIKSGIESNATLECGGDQIGDKGYFIQPTVFSNVKDDMLI 432          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: IOLA_LISMH (Methylmalonate semialdehyde dehydrogenase [acylating] OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=iolA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.619e-20
Identity = 70/238 (29.41%), Postives = 110/238 (46.22%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISK--KAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGATFCQEYRR----EGNLIWPLLLDNVRPDMRI 723
            P+GVV  I PFN+P+ +       A+  GNS +LKP  +  +    +V  F  AG PKG+ + V G    +   L  +  +  +SF G    G  + K   A +  +Q   G K+  IVL DADL+    N+I   F  +G+RC A  VV V E +AD            + +G   ++   + PV+ E +       +    ++GA    + R     EG+ + P +L++V  DM I
Sbjct:  142 PVGVVGGIAPFNFPMMVPCWMFPMAIALGNSFILKPSERTPLLMEKLVELFSEAGLPKGVFNVVYGAHDVVNGILE-NEIIKAVSFVGSKPVGEYVYKTGSANLKRVQALTGAKNHTIVLNDADLEDTVTNVISAAFGSAGERCMACAVVTVEEDIADEFLEALRTAAKNVKIGNGLDDGVFLGPVIREENQKRTIAYIEKGVEEGAKLTVDGRETGLSEGHFVGPTILEDVTTDMTI 378          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: IOLA_LISMF (Methylmalonate semialdehyde dehydrogenase [acylating] OS=Listeria monocytogenes serotype 4b (strain F2365) GN=iolA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.619e-20
Identity = 70/238 (29.41%), Postives = 110/238 (46.22%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISK--KAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGATFCQEYRR----EGNLIWPLLLDNVRPDMRI 723
            P+GVV  I PFN+P+ +       A+  GNS +LKP  +  +    +V  F  AG PKG+ + V G    +   L  +  +  +SF G    G  + K   A +  +Q   G K+  IVL DADL+    N+I   F  +G+RC A  VV V E +AD            + +G   ++   + PV+ E +       +    ++GA    + R     EG+ + P +L++V  DM I
Sbjct:  142 PVGVVGGIAPFNFPMMVPCWMFPMAIALGNSFILKPSERTPLLMEKLVELFSEAGLPKGVFNVVYGAHDVVNGILE-NEIIKAVSFVGSKPVGEYVYKTGSANLKRVQALTGAKNHTIVLNDADLEDTVTNVISAAFGSAGERCMACAVVTVEEGIADEFLAALRTAAQNVKIGNGLDDGVFLGPVIREENQKRTIAYIEKGLEEGAKLTVDGRETGLSEGHFVGPTILEDVTTDMTI 378          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: IOLA_LISMC (Methylmalonate semialdehyde dehydrogenase [acylating] OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=iolA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.619e-20
Identity = 70/238 (29.41%), Postives = 110/238 (46.22%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISK--KAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGATFCQEYRR----EGNLIWPLLLDNVRPDMRI 723
            P+GVV  I PFN+P+ +       A+  GNS +LKP  +  +    +V  F  AG PKG+ + V G    +   L  +  +  +SF G    G  + K   A +  +Q   G K+  IVL DADL+    N+I   F  +G+RC A  VV V E +AD            + +G   ++   + PV+ E +       +    ++GA    + R     EG+ + P +L++V  DM I
Sbjct:  142 PVGVVGGIAPFNFPMMVPCWMFPMAIALGNSFILKPSERTPLLMEKLVELFSEAGLPKGVFNVVYGAHDVVNGILE-NEIIKAVSFVGSKPVGEYVYKTGSANLKRVQALTGAKNHTIVLNDADLEDTVTNVISAAFGSAGERCMACAVVTVEEGIADEFLAALRTAAQNVKIGNGLDDGVFLGPVIREENQKRTIAYIEKGLEEGAKLTVDGRETGLSEGHFVGPTILEDVTTDMTI 378          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: GABD1_MYCPA (Succinate-semialdehyde dehydrogenase [NADP+] OS=Mycobacterium paratuberculosis GN=gabD1 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.619e-20
Identity = 70/208 (33.65%), Postives = 103/208 (49.52%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGD-TGISISKKAG--MIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVG-PPEESCDITPVVSESSANFIEGLVMDAKQKGAT 645
            PLGVVLA+ P+N+P+  AV   APAL+AGN  +LK  +    +AL++       GFP+G    +    S + + +   P V   + TG +  G S++  AG  + P  +ELGG D  IV+  ADLD      +      +GQ C A K  +V   + D+           L VG P + + D+ P+ +ES  + I   V DA   GAT
Sbjct:  124 PLGVVLAVMPWNFPLWQAVRFAAPALMAGNVGILKHASNVPQSALYLADVITRGGFPEGCFQTLLVPSSAV-ERILRDPRVAAATLTGSEPAGQSVAAIAGDEIKPTVLELGGSDPFIVMPSADLDEAVKTAVTARVQNNGQSCIAAKRFIVHTDIYDAFVDKFVEQMKALKVGDPTDPATDVGPLATESGRDEIAKQVDDAVAAGAT 330          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: GABD1_MYCA1 (Succinate-semialdehyde dehydrogenase [NADP+] OS=Mycobacterium avium (strain 104) GN=gabD1 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.619e-20
Identity = 70/208 (33.65%), Postives = 103/208 (49.52%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGD-TGISISKKAG--MIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVG-PPEESCDITPVVSESSANFIEGLVMDAKQKGAT 645
            PLGVVLA+ P+N+P+  AV   APAL+AGN  +LK  +    +AL++       GFP+G    +    S + + +   P V   + TG +  G S++  AG  + P  +ELGG D  IV+  ADLD      +      +GQ C A K  +V   + D+           L VG P + + D+ P+ +ES  + I   V DA   GAT
Sbjct:  124 PLGVVLAVMPWNFPLWQAVRFAAPALMAGNVGILKHASNVPQSALYLADVITRGGFPEGCFQTLLVPSSAV-ERILRDPRVAAATLTGSEPAGQSVAAIAGDEIKPTVLELGGSDPFIVMPSADLDEAVKTAVTARVQNNGQSCIAAKRFIVHTDIYDTFVDKFVEQMKALKVGDPTDPATDVGPLATESGRDEIAKQVDDAVAAGAT 330          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_MARMS (Betaine aldehyde dehydrogenase OS=Marinomonas sp. (strain MWYL1) GN=betB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.619e-20
Identity = 67/243 (27.57%), Postives = 111/243 (45.68%), Query Frame = 1
Query:   22 TSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTG--ISISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGAT-FCQEYR------REGNLIWPLLLDNVRPDM 717
            T   PLG+   I  +NYP+ +A+ K  PAL AGN+++ KP  +  + AL +   F  AG P G+ + + G  +  G  +T HP ++ +SFTG   TG  +  +    +  + MELGGK   I+  D  +D   +  +   F   G+ CT    V V   + D+           + +G P +    +  ++S+     + G +  AK  GAT  C  Y+       +G  + P +  +   DM
Sbjct:  135 TRREPLGICAGIGAWNYPIQIAMWKSGPALAAGNAMIFKPSEETPLTALKLAEIFTEAGLPDGVFNVIQG-DARTGQLITNHPDIDKVSFTGEVGTGKKVMAASAQSLKQVTMELGGKSPMIIFPDMPVDQAVSAAMLANFYTQGEVCTNGTRVFVHADMLDAFTKELKQRTEAMIIGDPMDMDTQVGALISKDHMQKVLGYIQAAKDAGATLLCGGYQVTENGLDKGAFVAPTVFTDCTDDM 376          
The following BLAST results are available for this feature:
BLAST of CX296726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GABD1_MYCBO9.489e-2131.22Succinate-semialdehyde dehydrogenase [NADP+] 1 OS=... [more]
AL1B1_BOVIN9.489e-2130.61Aldehyde dehydrogenase X, mitochondrial (Fragment)... [more]
ALDH4_BACSU1.239e-2031.12Putative aldehyde dehydrogenase dhaS OS=Bacillus s... [more]
AL2B4_ARATH1.239e-2030.58Aldehyde dehydrogenase family 2 member B4, mitocho... [more]
IOLA_LISMH1.619e-2029.41Methylmalonate semialdehyde dehydrogenase [acylati... [more]
IOLA_LISMF1.619e-2029.41Methylmalonate semialdehyde dehydrogenase [acylati... [more]
IOLA_LISMC1.619e-2029.41Methylmalonate semialdehyde dehydrogenase [acylati... [more]
GABD1_MYCPA1.619e-2033.65Succinate-semialdehyde dehydrogenase [NADP+] OS=My... [more]
GABD1_MYCA11.619e-2033.65Succinate-semialdehyde dehydrogenase [NADP+] OS=My... [more]
BETB_MARMS1.619e-2027.57Betaine aldehyde dehydrogenase OS=Marinomonas sp. ... [more]

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Properties
Property NameValue
Genbank descriptionC05802B04SK FerrChloL1 Citrus clementina cDNA clone C05802B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296726 ID=CX296726; Name=CX296726; organism=Citrus clementina; type=EST; length=724bp
GAGAGGACTAAATATTGTCTCACTTCAAACATTCCACTTGGTGTGGTTTT
GGCCATTCCACCATTCAACTATCCAGTCAATCTTGCCGTTTCCAAAATTG
CTCCTGCACTGATTGCTGGAAATTCCCTTGTGCTTAAGCCTCCTACTCAG
GGTGCTGTTGCTGCGCTTCACATGGTGCATTGCTTTCACTTGGCTGGTTT
TCCTAAAGGTCTTATAAGCTGTGTCACCGGGAAAGGTTCTGAGATTGGTG
ATTTCCTTACTATGCATCCTGCAGTGAACTGTATAAGCTTCACTGGTGGA
GACACTGGAATTTCAATCTCTAAGAAGGCTGGAATGATCCCTCTTCAGAT
GGAGTTGGGAGGCAAAGATGCTTGTATCGTGCTTGAGGATGCTGACCTTG
ATTTGGTTGCCGCAAACATAATAAAAGGAGGATTTTCTTACAGTGGTCAA
AGATGCACTGCAGTTAAGGTTGTCTTGGTGATGGAATCTGTAGCAGATTC
CCTGGTCGAGAAGGTTAAGGCTAAAGTGGTGAAACTGACAGTTGGCCCTC
CTGAAGAAAGCTGTGATATCACTCCAGTTGTGTCGGAATCATCTGCAAAT
TTCATTGAAGGGCTGGTTATGGATGCCAAACAGAAAGGAGCAACATTCTG
TCAAGAGTACAGGAGAGAAGGCAACCTCATCTGGCCCTTGTTGCTTGACA
ATGTTAGGCCCGATATGAGGATCG
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