CX296726

Overview
NameCX296726
Unique NameCX296726
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12872 contig Ccv1_Contig12872:500..1223. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: SSDH1_SCHPO (Putative succinate-semialdehyde dehydrogenase C1002.12c [NADP+] OS=Schizosaccharomyces pombe GN=SPAC1002.12c PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.049e-19
Identity = 74/244 (30.33%), Postives = 116/244 (47.54%), Query Frame = 1
Query:   19 LTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKG-SEIGDFLTMHPAVNCISFTGG-DTGISISKKAG--MIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVG-PPEESCDITPVVSESSANFIEGLVMDAKQKGATFCQEYRREGNL----IWPLLLDNVRPDMRI 723
            +T   P+GVV  I P+N+P  +   K+  AL AG ++V++P  +    AL +      AG P G+++ VT    SE G  LT +P +  +SFTG  + G  ++K++   +  L +ELGG    IV EDADL+  A  ++   F  SGQ C     + V  SV D+             +G   +      P++SE + + ++  V DA QKG       +   NL      P ++ N +  M I
Sbjct:  154 ITIKQPVGVVGIITPWNFPAAMITRKVGAALAAGCTVVIRPAAETPFTALALAKLAERAGVPAGVLNMVTANSPSEHGIELTTNPLIRKVSFTGSTNVGKILAKQSSSTLKKLSLELGGNAPFIVFEDADLEKAADALMACKFRGSGQTCVCANRIYVHSSVYDAFVDLVTERVSKFKLGYGLDAGVTHGPLISEKAISKVKQHVEDAVQKGGVVVTGGKVASNLGPMYFEPTVIINAKQGMLI 397          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_IDILO (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Idiomarina loihiensis GN=astD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.049e-19
Identity = 57/156 (36.54%), Postives = 87/156 (55.77%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTG-GDTGISISKKAGMIP---LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMES 489
            P GVV    P+N+P +L    I PALIAGN++V KP     + A   V  +  AG P G+++ V G+  + G  L+ HP ++ + FTG  +TG  + K+ G  P   L +E+GG +  +V   AD+D    NI++  F  SGQRCT  + + + +S
Sbjct:  137 PHGVVAVYGPYNFPGHLPNGHIVPALIAGNTVVFKPSELTPMVAQETVKLWEKAGIPAGVLNLVQGE-VDTGKALSAHPQIDGLYFTGSSNTGHLLHKQFGGRPDKILALEMGGNNPLLVTNVADVDAAVHNIVQSAFITSGQRCTCARRLFIEDS 291          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: FTHFD_XENTR (10-formyltetrahydrofolate dehydrogenase OS=Xenopus tropicalis GN=aldh1l1 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.370e-19
Identity = 72/242 (29.75%), Postives = 108/242 (44.63%), Query Frame = 1
Query:   22 TSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKK---AGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGATFC---QEYRREGNLIWPLLLDNVRPDMRI 723
            T   P+GV   + P+NYP+ +   K A  L AGN++VLKP     + AL        AG PKG+I+ + G GS IG  L+ HP V  I FTG    G  I K      +  + +ELGGK   I+ +D DLD      +   F   G+ C A   + + ES+ D            + +G P + S D  P   ++  + +        ++GA      ++  R G    P +  +V  +M I
Sbjct:  559 TRREPIGVCGIVIPWNYPLMMLAWKTAACLAAGNTVVLKPAQVTPLTALKFAELSVKAGIPKGVINILPGAGSLIGQRLSDHPDVRKIGFTGSTPIGKHIMKSCAVGNVKKVSLELGGKSPLIIFQDCDLDKAVRMGMSSVFFNKGENCIAAGRLFLEESIHDEFVKRVVGEVKKMKIGDPLDRSTDHGPQNHKAHLDKLIEYCQTGVKEGAKLVYGGKQVERPGFFFEPTIFTDVTDEMFI 800          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ALDH2_PIG (Aldehyde dehydrogenase, mitochondrial OS=Sus scrofa GN=ALDH2 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.789e-19
Identity = 66/215 (30.70%), Postives = 101/215 (46.98%), Query Frame = 1
Query:   13 YCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEES-CDITPVVSESSANFIEGLVMDAKQKGA 642
            +  T + P+GV   I P+N+P+ +   K+ PAL  GN +V+K   Q  + AL++ +    AGFP G+++ V G G   G  +  H  V+ ++FTG  + G  I   AG   L+   +ELGGK   I++ DAD+D          F   GQ C A     V E +                VG P +S  +  P + E+    I G +   K++GA
Sbjct:  172 FSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVSEQTPLTALYVANLIKEAGFPPGVVNIVPGYGPTAGAAIASHEDVDKVAFTGSTEVGHLIQVAAGKSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCCCAGSRTFVQEDIYAEFVERSVARARSRVVGNPFDSRTEQGPQIDETQFKKILGYIKSGKEEGA 386          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: IOLA2_OCEIH (Methylmalonate semialdehyde dehydrogenase [acylating] 2 OS=Oceanobacillus iheyensis GN=iolA2 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.052e-19
Identity = 66/240 (27.50%), Postives = 106/240 (44.17%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGDTGISISKKAG---MIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGATFCQEYR------REGNLIWPLLLDNVRPDMRI 723
            P+GV+  I PFN+P+ +       A+  GN+ V+KP  +  + A  +      AG P G+ + V G    +   L  H  V  ISF G         K G   +  +Q   G K+  IVL DA+L+     I+   F  +G+RC A  VV V E VAD            + +G   +E   + PV+ +         +   +++GA   ++ R      +EG  + P + D+V  +M+I
Sbjct:  144 PIGVIGGITPFNFPMMVPCWMFPMAIATGNTFVMKPSERTPLLANRLAELLEEAGLPNGVFNIVHGAHDVVNGLLD-HKKVAAISFVGSQPVAEYVYKRGTQNLKRVQALAGAKNHSIVLSDANLENATTQILNAAFGSAGERCMAASVVAVEEDVADEFVTLLTQKANEIKIGNGLDEGVFLGPVIRDQHKERTLQYIESGEEEGANLVRDGRTDEAAKQEGYFVGPTIFDHVTSEMKI 382          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: FTHFD_XENLA (10-formyltetrahydrofolate dehydrogenase OS=Xenopus laevis GN=aldh1l1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.052e-19
Identity = 74/242 (30.58%), Postives = 108/242 (44.63%), Query Frame = 1
Query:   22 TSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKK---AGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSAN-FIEGLVMDAKQKGATFC--QEYRREGNLIWPLLLDNVRPDMRI 723
            T   P+GV   + P+NYP+ +   K A  L AGN++VLKP     + AL        AG PKG+I+ + G GS IG  L+ HP V  I FTG    G  I K    + +  + +ELGGK   I+  D DLD      +   F   G+ C A   + + ES+ D            + +G P + S D  P   ++  +  IE      K+ G      ++  R G    P +  +V  +M I
Sbjct:  559 TRREPIGVCGIVIPWNYPLMMLAWKTAACLTAGNTVVLKPAQVTPLTALKFAELSVKAGIPKGVINILPGAGSLIGQRLSDHPDVRKIGFTGSTPIGKQIMKSCAVSNVKKVSLELGGKSPLIIFHDCDLDKAVRMGMSSVFFNKGENCIAAGRLFLEESIHDEFVKRVVEEVKKMKIGDPLDRSTDHGPQNHKAHLDKLIEYCQTGVKEGGKLVYGGKQVERPGFFFEPTIFTDVTDEMFI 800          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ALDH2_BOVIN (Aldehyde dehydrogenase, mitochondrial OS=Bos taurus GN=ALDH2 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.052e-19
Identity = 65/215 (30.23%), Postives = 101/215 (46.98%), Query Frame = 1
Query:   13 YCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMIPLQ---MELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEES-CDITPVVSESSANFIEGLVMDAKQKGA 642
            +  T + P+GV   I P+N+P+ +   K+ PAL  GN +V+K   Q  + AL++ +    AGFP G+++ + G G   G  +  H  V+ ++FTG  + G  I   AG   L+   +ELGGK   I++ DAD+D          F   GQ C A     V E +                VG P +S  +  P V E+    + G +   K++GA
Sbjct:  171 FSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNVIPGFGPTAGAAIASHEDVDKVAFTGSTEVGHLIQVAAGKSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCCCAGSRTFVQEDIYAEFVERSVARAKSRVVGNPFDSRTEQGPQVDETQFKKVLGYIKSGKEEGA 385          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: FTHFD_RAT (10-formyltetrahydrofolate dehydrogenase OS=Rattus norvegicus GN=Aldh1l1 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 8.881e-19
Identity = 70/243 (28.81%), Postives = 106/243 (43.62%), Query Frame = 1
Query:   19 LTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMI---PLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGATFC---QEYRREGNLIWPLLLDNVRPDMRI 723
            LT   P+GV   + P+NYP+ +   K A  L AGN++V+KP     + AL        AG PKG+++ + G GS +G  L+ HP V  I FTG  + G  I K   +     + +ELGGK   I+  D DL+      +   F   G+ C A   + V ES+ +            + +G P E   +  P   E+    +        ++GAT      +  R G    P +  +V   M I
Sbjct:  558 LTKKEPVGVCGIVIPWNYPLMMLSWKTAACLAAGNTVVIKPAQVTPLTALKFAELTLKAGIPKGVVNILPGSGSLVGQRLSDHPDVRKIGFTGSTEVGKHIMKSCALSNVKKVSLELGGKSPLIIFADCDLNKAVQMGMSSVFFNKGENCIAAGRLFVEESIHNQFVQKVVEEVEKMKIGNPLERDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGNQVPRPGFFFQPTVFTDVEDHMYI 800          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_RHOS5 (Betaine aldehyde dehydrogenase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=betB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.881e-19
Identity = 66/213 (30.99%), Postives = 101/213 (47.42%), Query Frame = 1
Query:   13 YCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKA--GMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKG 639
            +  T   PLG+ + I  +NYP  +A  K APAL  GN++V KP     + AL +      AG P GL + V G+G+ +G  L     V  +S TG   TG  +   A  G+  + MELGGK   IV +DADL+      + G F  SGQ C+    V V + + ++           + +G P +    + P+VS +    +   +  A+ +G
Sbjct:  134 FVYTIREPLGLCVGIGAWNYPSQIACWKAAPALALGNAMVFKPSEVTPLGALKLAEILIEAGLPPGLFNVVQGRGA-VGAALVSDSRVAKVSLTGSVPTGRRVYAAAAEGVRHVTMELGGKSPLIVFDDADLESAIGAAMLGNFYSSGQICSNGTRVFVQKGIKEAFLARLAERADAIQMGDPLDPEVQMGPLVSPAQLEKVLSYIEKARAEG 345          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_RHOS4 (Betaine aldehyde dehydrogenase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=betB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.881e-19
Identity = 65/213 (30.52%), Postives = 102/213 (47.89%), Query Frame = 1
Query:   13 YCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKA--GMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKG 639
            +  T   PLG+ + I  +NYP  +A  K APAL  GN++V KP     + AL +      AG P GL + V G+G+ +G  L     V  +S TG   TG  +   A  G+  + MELGGK   IV +DADL+      + G F  +GQ C+    V V + + ++           + +G P +    + P+VS++    +   +  A+ +G
Sbjct:  134 FVYTIREPLGLCVGIGAWNYPSQIACWKAAPALALGNAMVFKPSEVTPLGALKLAEILIEAGLPPGLFNVVQGRGA-VGASLVTDSRVAKVSLTGSVPTGRRVYAAAAEGVRHVTMELGGKSPLIVFDDADLESAIGAAMLGNFYSAGQICSNGTRVFVQKGIKEAFLARLAERADAIRMGDPLDPEVQMGPLVSQAQLEKVLAYIEKARAEG 345          
The following BLAST results are available for this feature:
BLAST of CX296726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SSDH1_SCHPO1.049e-1930.33Putative succinate-semialdehyde dehydrogenase C100... [more]
ASTD_IDILO1.049e-1936.54N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
FTHFD_XENTR1.370e-1929.7510-formyltetrahydrofolate dehydrogenase OS=Xenopus... [more]
ALDH2_PIG1.789e-1930.70Aldehyde dehydrogenase, mitochondrial OS=Sus scrof... [more]
IOLA2_OCEIH3.052e-1927.50Methylmalonate semialdehyde dehydrogenase [acylati... [more]
FTHFD_XENLA3.052e-1930.5810-formyltetrahydrofolate dehydrogenase OS=Xenopus... [more]
ALDH2_BOVIN3.052e-1930.23Aldehyde dehydrogenase, mitochondrial OS=Bos tauru... [more]
FTHFD_RAT8.881e-1928.8110-formyltetrahydrofolate dehydrogenase OS=Rattus ... [more]
BETB_RHOS58.881e-1930.99Betaine aldehyde dehydrogenase OS=Rhodobacter spha... [more]
BETB_RHOS48.881e-1930.52Betaine aldehyde dehydrogenase OS=Rhodobacter spha... [more]

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Properties
Property NameValue
Genbank descriptionC05802B04SK FerrChloL1 Citrus clementina cDNA clone C05802B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296726 ID=CX296726; Name=CX296726; organism=Citrus clementina; type=EST; length=724bp
GAGAGGACTAAATATTGTCTCACTTCAAACATTCCACTTGGTGTGGTTTT
GGCCATTCCACCATTCAACTATCCAGTCAATCTTGCCGTTTCCAAAATTG
CTCCTGCACTGATTGCTGGAAATTCCCTTGTGCTTAAGCCTCCTACTCAG
GGTGCTGTTGCTGCGCTTCACATGGTGCATTGCTTTCACTTGGCTGGTTT
TCCTAAAGGTCTTATAAGCTGTGTCACCGGGAAAGGTTCTGAGATTGGTG
ATTTCCTTACTATGCATCCTGCAGTGAACTGTATAAGCTTCACTGGTGGA
GACACTGGAATTTCAATCTCTAAGAAGGCTGGAATGATCCCTCTTCAGAT
GGAGTTGGGAGGCAAAGATGCTTGTATCGTGCTTGAGGATGCTGACCTTG
ATTTGGTTGCCGCAAACATAATAAAAGGAGGATTTTCTTACAGTGGTCAA
AGATGCACTGCAGTTAAGGTTGTCTTGGTGATGGAATCTGTAGCAGATTC
CCTGGTCGAGAAGGTTAAGGCTAAAGTGGTGAAACTGACAGTTGGCCCTC
CTGAAGAAAGCTGTGATATCACTCCAGTTGTGTCGGAATCATCTGCAAAT
TTCATTGAAGGGCTGGTTATGGATGCCAAACAGAAAGGAGCAACATTCTG
TCAAGAGTACAGGAGAGAAGGCAACCTCATCTGGCCCTTGTTGCTTGACA
ATGTTAGGCCCGATATGAGGATCG
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