CX296726

Overview
NameCX296726
Unique NameCX296726
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12872 contig Ccv1_Contig12872:500..1223. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_RHOS1 (Betaine aldehyde dehydrogenase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=betB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.881e-19
Identity = 65/213 (30.52%), Postives = 102/213 (47.89%), Query Frame = 1
Query:   13 YCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKA--GMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKG 639
            +  T   PLG+ + I  +NYP  +A  K APAL  GN++V KP     + AL +      AG P GL + V G+G+ +G  L     V  +S TG   TG  +   A  G+  + MELGGK   IV +DADL+      + G F  +GQ C+    V V + + ++           + +G P +    + P+VS++    +   +  A+ +G
Sbjct:  134 FVYTIREPLGLCVGIGAWNYPSQIACWKAAPALALGNAMVFKPSEVTPLGALKLAEILIEAGLPPGLFNVVQGRGA-VGAALVTDSRVAKVSLTGSVPTGRRVYAAAAEGVRHVTMELGGKSPLIVFDDADLESAIGAAMLGNFYSAGQICSNGTRVFVQKGIKEAFLARLAERADAIRMGDPLDPEVQMGPLVSQAQLEKVLAYIEKARAEG 345          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: FTHFD_PONAB (10-formyltetrahydrofolate dehydrogenase OS=Pongo abelii GN=ALDH1L1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.160e-18
Identity = 60/182 (32.97%), Postives = 87/182 (47.80%), Query Frame = 1
Query:   19 LTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKK---AGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP 552
            LT   P+GV   I P+NYP+ +   K A  L AGN++V+KP     + AL        AG PKG+++ + G GS +G  L+ HP V  I FTG  + G  I K    + +  + +ELGGK   I+  D DL+      +   F   G+ C A   + V +S+ D            + VG P
Sbjct:  558 LTRKEPVGVCGIIIPWNYPLMMLSWKTAACLAAGNTVVIKPAQVTPLTALKFAELTLKAGIPKGVVNVLPGSGSLVGQRLSDHPDVRKIGFTGSTEVGKHIMKSCAISNVKKVSLELGGKSPLIIFADCDLNKAVQMGMSSVFFNKGENCIAAGRLFVEDSIHDEFVRRVVEEVRKMKVGDP 739          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: FTHFD_MOUSE (10-formyltetrahydrofolate dehydrogenase OS=Mus musculus GN=Aldh1l1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.160e-18
Identity = 69/243 (28.40%), Postives = 106/243 (43.62%), Query Frame = 1
Query:   19 LTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKAGMI---PLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKGATFC---QEYRREGNLIWPLLLDNVRPDMRI 723
            LT   P+GV   + P+NYP+ +   K A  L AGN++V+KP     + AL        AG PKG+++ + G GS +G  L+ HP V  I FTG  + G  I K   +     + +ELGGK   I+  D DL+      +   F   G+ C A   + V +S+ D            + +G P +   +  P   E+    +        ++GAT      +  R G    P +  +V   M I
Sbjct:  558 LTKKEPVGVCGIVIPWNYPLMMLSWKTAACLAAGNTVVIKPAQVTPLTALKFAELTLKAGIPKGVVNILPGSGSLVGQRLSDHPDVRKIGFTGSTEVGKHIMKSCALSNVKKVSLELGGKSPLIIFADCDLNKAVQMGMSSVFFNKGENCIAAGRLFVEDSIHDQFVQKVVEEVGKMKIGNPLDRDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGNQVPRPGFFFQPTVFTDVEDHMYI 800          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: BETB_RHOSK (Betaine aldehyde dehydrogenase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=betB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.160e-18
Identity = 65/213 (30.52%), Postives = 101/213 (47.42%), Query Frame = 1
Query:   13 YCLTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKKA--GMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP-EESCDITPVVSESSANFIEGLVMDAKQKG 639
            +  T   PLG+ + I  +NYP  +A  K APAL  GN++V KP     + AL +      AG P GL + V G+G  +G  L     V  +S TG   TG  +   A  G+  + MELGGK   IV +DADL+      + G F  +GQ C+    V V + + ++           + +G P +    + P+VS++    +   +  A+ +G
Sbjct:  134 FVYTIREPLGLCVGIGAWNYPSQIACWKAAPALALGNAMVFKPSEVTPLGALKLAEILIEAGLPPGLFNVVQGRGG-VGAALVTDSRVAKVSLTGSVPTGRRVYAAAAEGVRHVTMELGGKSPLIVFDDADLESAIGAAMLGNFYSAGQICSNGTRVFVQKGIKEAFLARLAERADAIRMGDPLDPEVQMGPLVSQAQLEKVLAYIEKARAEG 345          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: MMSA_CAEEL (Probable methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Caenorhabditis elegans GN=alh-8 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.515e-18
Identity = 66/239 (27.62%), Postives = 111/239 (46.44%), Query Frame = 1
Query:   31 IPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGD-TGISISKKAGM--IPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEESCDITPVVSESSANFIEGLVMDAKQKGATFCQEYR-------REGNLIWPLLLDNVRPDM 717
            IPLGV   I PFN+P  + +     AL  GN++V+KP  Q   AA  +V     AG P G ++ + G+ S + +F+  +P +  ISF GGD  G  I ++       +Q  +G K+  +++ DA+ +     +    F  +GQRC A+   +++      L                +   DI P++S+ S   +  L+  AK++GA    +           GN + P +L  V+P+M
Sbjct:  164 IPLGVTAGICPFNFPAMIPLWMFPVALATGNTMVIKPSEQDPGAAQLLVELAKEAGVPDGCVNIIHGQHSAV-NFICDNPDIKAISFVGGDAAGKHIYERGAKNGKRVQSNMGAKNHGVIMADANKEQTLNQLTAAAFGAAGQRCMALTTAVLVGEARAWLPELVEKAKNLKVNAGWKPDTDIGPLISKQSKARVLRLIESAKKEGAQVPLDGSNITVPGFENGNFVGPTILAGVKPNM 401          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: GABD_SYNY3 (Probable succinate-semialdehyde dehydrogenase [NADP+] OS=Synechocystis sp. (strain PCC 6803) GN=gabD PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.515e-18
Identity = 79/235 (33.62%), Postives = 105/235 (44.68%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGD-TGISI-SKKAGMI-PLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPE-ESCDITPVVSESSANFIEGLVMDAKQKGATFC----QEYRREGNLIWPLLLDNVRPD 714
            PLGV+LA+ P+N+P        APAL+AGN  +LK  +     AL +   F  AGFP+G    +   G ++   L     +   + TG +  G S  S  AG I    +ELGG D  IVLEDADLD      +      +GQ C A K  +V  SVA+            L VG P   + DI P+ +      I   V      GA  C    Q   + GN   P LL +V P+
Sbjct:  120 PLGVILAVMPWNFPFWQVFRFAAPALMAGNVGLLKHASNVPQCALAIAEIFQTAGFPEGAFQTLL-IGGKVASELMADDRIQAGTLTGSEPAGASFASAAAGQIKKTVLELGGSDPFIVLEDADLDQALKVAVPARMQNNGQSCIAAKRFIVQASVAEEFFQRLTKAFQALKVGDPSLSTTDIGPLATPDILADIVAQVEQTIAAGA-HCRCGGQALDQPGNYYPPTLLTDVPPN 352          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: FTHFD_HUMAN (10-formyltetrahydrofolate dehydrogenase OS=Homo sapiens GN=ALDH1L1 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.515e-18
Identity = 60/182 (32.97%), Postives = 87/182 (47.80%), Query Frame = 1
Query:   19 LTSNIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-DTGISISKK---AGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPP 552
            LT   P+GV   I P+NYP+ +   K A  L AGN++V+KP     + AL        AG PKG+++ + G GS +G  L+ HP V  I FTG  + G  I K    + +  + +ELGGK   I+  D DL+      +   F   G+ C A   + V +S+ D            + VG P
Sbjct:  558 LTRKEPVGVCGIIIPWNYPLMMLSWKTAACLAAGNTVVIKPAQVTPLTALKFAELTLKAGIPKGVVNVLPGSGSLVGQRLSDHPDVRKIGFTGSTEVGKHIMKSCAISNVKKVSLELGGKSPLIIFADCDLNKAVQMGMSSVFFNKGENCIAAGRLFVEDSIHDEFVRRVVEEVRKMKVGNP 739          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: MMSA_DICDI (Probable methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Dictyostelium discoideum GN=mmsdh PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.978e-18
Identity = 65/240 (27.08%), Postives = 103/240 (42.92%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGDTG---ISISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEESCDITPVVSESSANFIEGLVMDAKQKGATFCQEYRR--------EGNLIWPLLLDNVRPDMR 720
            PLGV   I PFN+P  + +     A+  GN+ VLKP  +   A++ +V     AG P G+++ + G G E  +F+   P V  ISF G D     I     A    +Q  +  K+   ++ DA  +     +    F  SGQRC A+   + +    + +             G      D+ PV+S +S   I  L+     +GA    + R         +GN + P +L +V+P MR
Sbjct:  165 PLGVCAGITPFNFPAMIPLWMFPLAIACGNTFVLKPSERVPSASMFLVQLAQEAGVPDGVVNVIHG-GKEAVNFICDAPEVRAISFVGADQAGRHIHARGTANGKRVQSNMAAKNHATIVPDAHKERTLDALTGAAFGASGQRCMALSAAVFVGESKNWIPELAERAKKLKVAGGAAPGADLGPVISAASKQRIHELIQSGIDEGAKCILDGRNVVVDPEFSKGNFVGPTILTDVKPHMR 403          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: GABD1_MYCLE (Succinate-semialdehyde dehydrogenase [NADP+] OS=Mycobacterium leprae GN=gabD1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.978e-18
Identity = 72/237 (30.38%), Postives = 108/237 (45.57%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGD-TGISISKKAG--MIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVG-PPEESCDITPVVSESSANFIEGLVMDAKQKGATF-CQEYR--REGNLIWPLLLDNVRPDMRI 723
            PLGVVLA+ P+N+P+   V   APAL+AGN  +LK  +     AL++       GFP+     +    + + + +   P V   + TG +  G ++   AG  + P  +ELGG D  IV+  ADLD   A  + G    +GQ C A K  +    + D            L VG P +   D+ P+ +ES    +E  V  A   GA   C   R  R G    P ++ ++  DM +
Sbjct:  123 PLGVVLAVMPWNFPLWQTVRFAAPALMAGNVGLLKHASNVPQCALYLADVIARGGFPEDCFQTLLISANGV-EAILRDPRVAAATLTGSEPAGQAVGAIAGNEIKPTVLELGGSDPFIVMPSADLDAAVATAVTGRVQNNGQSCIAAKRFIAHADIYDEFVEKFVARMETLRVGDPTDPDTDVGPLATESGRAQVEQQVDAAAAAGAVIRCGGKRPDRPGWFYPPTVITDITKDMAL 358          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_PSEA6 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=astD PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.584e-18
Identity = 71/232 (30.60%), Postives = 113/232 (48.71%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGD-TGISISKKAGMIP---LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCT-AVKVVLVMESVADSLXXXXXXXXXXLTVG--PPEESCDITPVVSESSANFIEGLVMDAKQKGATFCQEYRR---EGNLIWPLLLD 699
            P GVV    P+N+P +L    I PAL+AGN +V KP     + A   V  +  AG PKG+++ V G+  E G  L  HP ++ + FTG   TG  + ++    P   L +E+GG +  IV + +D+D    +II+  F  SGQRCT A K+ L   +  D++          + VG    +E   +  ++S+++A+ +          GAT   E      E   + P ++D
Sbjct:  137 PHGVVAVFGPYNFPGHLPNGHIVPALLAGNCIVFKPSDLTPLVAERTVQLWEKAGLPKGVLNLVQGE-VETGKALAAHPDLDGLFFTGSSRTGKILHEQYAGHPGKILALEMGGNNPLIVKDISDIDATVHDIIQSAFVTSGQRCTCARKLFLENNTQGDAILARLIEVTKNIKVGDYDADEQPFMGAMISKNAAHAMVMAQQQLLDLGATSLVELTHLDPESGFVSPGIID 367          
The following BLAST results are available for this feature:
BLAST of CX296726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
BETB_RHOS18.881e-1930.52Betaine aldehyde dehydrogenase OS=Rhodobacter spha... [more]
FTHFD_PONAB1.160e-1832.9710-formyltetrahydrofolate dehydrogenase OS=Pongo a... [more]
FTHFD_MOUSE1.160e-1828.4010-formyltetrahydrofolate dehydrogenase OS=Mus mus... [more]
BETB_RHOSK1.160e-1830.52Betaine aldehyde dehydrogenase OS=Rhodobacter spha... [more]
MMSA_CAEEL1.515e-1827.62Probable methylmalonate-semialdehyde dehydrogenase... [more]
GABD_SYNY31.515e-1833.62Probable succinate-semialdehyde dehydrogenase [NAD... [more]
FTHFD_HUMAN1.515e-1832.9710-formyltetrahydrofolate dehydrogenase OS=Homo sa... [more]
MMSA_DICDI1.978e-1827.08Probable methylmalonate-semialdehyde dehydrogenase... [more]
GABD1_MYCLE1.978e-1830.38Succinate-semialdehyde dehydrogenase [NADP+] OS=My... [more]
ASTD_PSEA62.584e-1830.60N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]

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Properties
Property NameValue
Genbank descriptionC05802B04SK FerrChloL1 Citrus clementina cDNA clone C05802B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296726 ID=CX296726; Name=CX296726; organism=Citrus clementina; type=EST; length=724bp
GAGAGGACTAAATATTGTCTCACTTCAAACATTCCACTTGGTGTGGTTTT
GGCCATTCCACCATTCAACTATCCAGTCAATCTTGCCGTTTCCAAAATTG
CTCCTGCACTGATTGCTGGAAATTCCCTTGTGCTTAAGCCTCCTACTCAG
GGTGCTGTTGCTGCGCTTCACATGGTGCATTGCTTTCACTTGGCTGGTTT
TCCTAAAGGTCTTATAAGCTGTGTCACCGGGAAAGGTTCTGAGATTGGTG
ATTTCCTTACTATGCATCCTGCAGTGAACTGTATAAGCTTCACTGGTGGA
GACACTGGAATTTCAATCTCTAAGAAGGCTGGAATGATCCCTCTTCAGAT
GGAGTTGGGAGGCAAAGATGCTTGTATCGTGCTTGAGGATGCTGACCTTG
ATTTGGTTGCCGCAAACATAATAAAAGGAGGATTTTCTTACAGTGGTCAA
AGATGCACTGCAGTTAAGGTTGTCTTGGTGATGGAATCTGTAGCAGATTC
CCTGGTCGAGAAGGTTAAGGCTAAAGTGGTGAAACTGACAGTTGGCCCTC
CTGAAGAAAGCTGTGATATCACTCCAGTTGTGTCGGAATCATCTGCAAAT
TTCATTGAAGGGCTGGTTATGGATGCCAAACAGAAAGGAGCAACATTCTG
TCAAGAGTACAGGAGAGAAGGCAACCTCATCTGGCCCTTGTTGCTTGACA
ATGTTAGGCCCGATATGAGGATCG
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