CX296726

Overview
NameCX296726
Unique NameCX296726
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12872 contig Ccv1_Contig12872:500..1223. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_PSEPG (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Pseudomonas putida (strain GB-1) GN=astD PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.408e-18
Identity = 63/180 (35.00%), Postives = 92/180 (51.11%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGD-TGISISKKAGMIP---LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVME-SVADSLXXXXXXXXXXLTVGPPEE 558
            P GVV    P+N+P +L    I PAL+AGN +V KP       A   V+C+  AG P G+++ V G   E G  L  +P ++ + FTG   TG  + ++    P   L +E+GG +  +V E  DLD     II+  F  +GQRCT  + +LV + S  D+L          +TVG  +E
Sbjct:  135 PHGVVAVFGPYNFPGHLPNGHIVPALLAGNCVVFKPSELTPKVAELTVNCWIAAGLPAGVLNLVQG-ARETGVALAANPGIDGLFFTGSSRTGNLLHQQFAGRPDKILALEMGGNNPLVVDEVKDLDAAVYTIIQSAFISAGQRCTCARRLLVPQGSWGDALIARLVDVCKTITVGAFDE 313          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: PUT2_EMENI (Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial OS=Emericella nidulans GN=prnC PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.757e-18
Identity = 67/210 (31.90%), Postives = 100/210 (47.62%), Query Frame = 1
Query:   40 GVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHL-AGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGG-----------DTGISISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEESCDIT-PVVSESSANFIEGLVMDAK 630
            G V AI PFN+         APAL+ GN +V KP +  A+A+  +VH   L AG PK +I  V G+  E+   +  HP    + FTG             T ++  K      +  E GGK+  ++ + AD+   A   ++G F Y GQ+C+A   V V  S+ADS           L VGPP +  +   PV+ E+S   +  ++ +AK
Sbjct:  206 GFVYAISPFNFTAIGGNLAGAPALM-GNVVVWKP-SPSAIASNWLVHQILLEAGLPKNVIQFVPGEAEEVTKTVLDHPDFAALHFTGSTNVFRNLYGQISTRVAAGKYRSYPRIVGETGGKNFHLIHKSADIRNAAVQTVRGAFEYQGQKCSATSRVYVASSIADSFLEQVASEAKSLKVGPPSDFTNFCGPVIHEASFTKLAKVIDEAK 413          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_PSEPK (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Pseudomonas putida (strain KT2440) GN=astD PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.757e-18
Identity = 62/180 (34.44%), Postives = 91/180 (50.56%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGD-TGISISKKAGMIP---LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESV-ADSLXXXXXXXXXXLTVGPPEE 558
            P GVV    P+N+P +L    I PAL+AGN +V KP       A   V+C+  AG P G+++ V G   E G  L  +P ++ + FTG   TG  + ++    P   L +E+GG +  +V E  DLD     II+  F  +GQRCT  + +LV +    D+L          +TVG  +E
Sbjct:  135 PHGVVAVFGPYNFPGHLPNGHIVPALLAGNCVVFKPSELTPKVAELTVNCWIAAGLPAGVLNLVQG-ARETGVALAANPGIDGLFFTGSSRTGNLLHQQFAGRPDKILALEMGGNNPLVVDEVKDLDAAVYTIIQSAFISAGQRCTCARRLLVPQGAWGDALIARLVEVCKTITVGAFDE 313          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_BURTA (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=astD PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.757e-18
Identity = 56/153 (36.60%), Postives = 82/153 (53.59%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTG-GDTGISISKKAGMIP---LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLV 480
            P GVV    P+N+P +L    I PALIAGN++V KP       A   V  +  AG P G+++ V G+  + G  L  H  ++ + FTG  DTG  + K+ G  P   L +E+GG +  +V E  D+D    + I+  F  +GQRCT  + +LV
Sbjct:  135 PHGVVAVFGPYNFPGHLPNGHIVPALIAGNTVVFKPSELAPGVARATVEIWRDAGLPAGVLNLVQGE-KDTGVALANHRQIDGLFFTGSSDTGTLLHKQFGGRPEIVLALEMGGNNPLVVAEVEDIDAAVHHAIQSAFLSAGQRCTCARRILV 286          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: MMSA_DROPS (Probable methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=GA14712 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.518e-18
Identity = 60/240 (25.00%), Postives = 111/240 (46.25%), Query Frame = 1
Query:   31 IPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGD-TGISISKKAGM--IPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEESCDITPVVSESSANFIEGLVMDAKQKGATFCQEYRR-------EGNLIWPLLLDNVRPDMR 720
            +PLGV   I PFN+P  + +     A+  GN+++LKP  +   A + ++   + AG P G+++ + G+   + +F+   PA+  +SF G D  G  I ++AG     +Q  +G K+  ++L DA+ +     +    F  +GQRC A+   + +      +                    D+ PV+S +S   I  L+    ++GA    + R+       +G  + P +L +V P M+
Sbjct:  160 MPLGVTAGIAPFNFPAMIPLWMFPVAITTGNTMLLKPSERVPGATMLLMELLNEAGCPPGVVNVIHGQHDAV-NFICDAPAIKAVSFVGSDQAGKYIYERAGKNGKRVQSNMGAKNHGVILSDANKENTLNQLAGAAFGAAGQRCMALSTAVFVGDAQGWIPDLVERAQKLKVNAGHVPGTDVGPVISAASRQRINDLIESGVKEGAKLILDGRKISVPGFEDGYFVGPTILSDVTPSMK 398          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_VIBCH (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Vibrio cholerae GN=astD PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.518e-18
Identity = 72/231 (31.17%), Postives = 110/231 (47.62%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTG-GDTGISISKKAGMIP---LQMELGGKDACIVLED-ADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESV-ADSLXXXXXXXXXXLTVGPP--EESCDITPVVSESSANFIEGLVMDAKQKGATFCQEYRR-EGNLIWPLLLD 699
            PLGV+    P+N+P +L    I PAL+AGN++V KP  Q       ++  +  AG P G+I+ V G   E G  L     ++ + FTG  +TG  + ++    P   L +E+GG +  ++ E   DLD     II+  F  SGQRCT V+ + V +    D+L          L +  P  E +  + P+VSE++A  I     D +  G     E R      I P ++D
Sbjct:  134 PLGVMAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSEQTPWTGEVLMQLWQQAGLPAGVINLVQG-SKETGIALAQSRGIDGLLFTGSANTGHLLHRQFAGQPDKMLALEMGGNNPMVISEHYGDLDATVYTIIQSAFISSGQRCTCVRRLYVPQGTKGDALLDKLVSVTAKLRIDQPFAEPAPFMGPLVSEAAAQAILKAQADLQALGGKSLLEARALHAAFITPAIID 363          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_VIBC3 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=astD PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.518e-18
Identity = 72/231 (31.17%), Postives = 110/231 (47.62%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTG-GDTGISISKKAGMIP---LQMELGGKDACIVLED-ADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESV-ADSLXXXXXXXXXXLTVGPP--EESCDITPVVSESSANFIEGLVMDAKQKGATFCQEYRR-EGNLIWPLLLD 699
            PLGV+    P+N+P +L    I PAL+AGN++V KP  Q       ++  +  AG P G+I+ V G   E G  L     ++ + FTG  +TG  + ++    P   L +E+GG +  ++ E   DLD     II+  F  SGQRCT V+ + V +    D+L          L +  P  E +  + P+VSE++A  I     D +  G     E R      I P ++D
Sbjct:  134 PLGVMAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSEQTPWTGEVLMQLWQQAGLPAGVINLVQG-SKETGIALAQSRGIDGLLFTGSANTGHLLHRQFAGQPDKMLALEMGGNNPMVISEHYGDLDATVYTIIQSAFISSGQRCTCVRRLYVPQGTKGDALLDKLVSVTAKLRIDQPFAEPAPFMGPLVSEAAAQAILKAQADLQALGGKSLLEARALHAAFITPAIID 363          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_PSEP1 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=astD PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.518e-18
Identity = 61/180 (33.89%), Postives = 91/180 (50.56%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGD-TGISISKKAGMIP---LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESV-ADSLXXXXXXXXXXLTVGPPEE 558
            P GVV    P+N+P +L    I PAL+AGN +V KP       A   V+C+  AG P G+++ V G   E G  L  +P ++ + FTG   TG  + ++    P   L +E+GG +  +V E  DLD     I++  F  +GQRCT  + +LV +    D+L          +TVG  +E
Sbjct:  135 PHGVVAVFGPYNFPGHLPNGHIVPALLAGNCVVFKPSELTPKVAELTVNCWIAAGLPAGVLNLVQG-ARETGVALAANPGIDGLFFTGSSRTGNLLHQQFAGRPDKILALEMGGNNPLVVDEVKDLDAAVYTIVQSAFISAGQRCTCARRLLVPQGAWGDALIARLVEVCKTITVGAFDE 313          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_VIBVY (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=astD PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 9.819e-18
Identity = 65/199 (32.66%), Postives = 102/199 (51.26%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTG-GDTGISISKKAGMIP---LQMELGGKDACIVLED-ADLDLVAANIIKGGFSYSGQRCT-AVKVVLVMESVADSLXXXXXXXXXXLTVGPP--EESCDITPVVSESSANFI 606
            PLGV+    P+N+P +L    I PAL+AGN++V KP  Q        +  +  AG P+G+I+ V G G E G  L     ++ + FTG  +TG  + ++    P   L +E+GG +  ++ +   DLD     II+  F  +GQRCT A ++ + +    D+L          L V  P  E +  + P +SE++ANFI
Sbjct:  134 PLGVMAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSEQTPWTGELAMKLWQAAGLPQGVINLVQG-GKETGIALAESKGIDGLLFTGSANTGHLLHRQFAGQPGKMLALEMGGNNPMVITDHYGDLDATVYTIIQSAFISAGQRCTCARRLYIPLGEKGDALITRLVEATKKLRVDQPFAEPAPFMGPQISEAAANFI 331          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_SHEPA (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=astD PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.819e-18
Identity = 60/177 (33.90%), Postives = 91/177 (51.41%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGD-TGISISKKAGMIP---LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVA-DSLXXXXXXXXXXLTVGP 549
            P GVV    P+N+P +L    I PAL+AGN++V KP       A  M+  +  AG PKG+I+ V G+  E G  L  HP ++ + FTG   TG  + ++    P   L +E+GG +  I+ + AD      +II+  +  +GQRCT  + + V +  A D+L          + VGP
Sbjct:  134 PHGVVAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSELTPKVAELMLKLWEKAGLPKGVINLVQGE-VETGKALAAHPQIDGLFFTGSSRTGHILHQQYAGDPGKILALEMGGNNPLIIKDVADTKAAVHDIIQSAYISAGQRCTCARRLYVEKGAAGDALLEQLVAAVKQIQVGP 309          
The following BLAST results are available for this feature:
BLAST of CX296726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ASTD_PSEPG4.408e-1835.00N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
PUT2_EMENI5.757e-1831.90Delta-1-pyrroline-5-carboxylate dehydrogenase, mit... [more]
ASTD_PSEPK5.757e-1834.44N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_BURTA5.757e-1836.60N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
MMSA_DROPS7.518e-1825.00Probable methylmalonate-semialdehyde dehydrogenase... [more]
ASTD_VIBCH7.518e-1831.17N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_VIBC37.518e-1831.17N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_PSEP17.518e-1833.89N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_VIBVY9.819e-1832.66N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_SHEPA9.819e-1833.90N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]

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Properties
Property NameValue
Genbank descriptionC05802B04SK FerrChloL1 Citrus clementina cDNA clone C05802B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296726 ID=CX296726; Name=CX296726; organism=Citrus clementina; type=EST; length=724bp
GAGAGGACTAAATATTGTCTCACTTCAAACATTCCACTTGGTGTGGTTTT
GGCCATTCCACCATTCAACTATCCAGTCAATCTTGCCGTTTCCAAAATTG
CTCCTGCACTGATTGCTGGAAATTCCCTTGTGCTTAAGCCTCCTACTCAG
GGTGCTGTTGCTGCGCTTCACATGGTGCATTGCTTTCACTTGGCTGGTTT
TCCTAAAGGTCTTATAAGCTGTGTCACCGGGAAAGGTTCTGAGATTGGTG
ATTTCCTTACTATGCATCCTGCAGTGAACTGTATAAGCTTCACTGGTGGA
GACACTGGAATTTCAATCTCTAAGAAGGCTGGAATGATCCCTCTTCAGAT
GGAGTTGGGAGGCAAAGATGCTTGTATCGTGCTTGAGGATGCTGACCTTG
ATTTGGTTGCCGCAAACATAATAAAAGGAGGATTTTCTTACAGTGGTCAA
AGATGCACTGCAGTTAAGGTTGTCTTGGTGATGGAATCTGTAGCAGATTC
CCTGGTCGAGAAGGTTAAGGCTAAAGTGGTGAAACTGACAGTTGGCCCTC
CTGAAGAAAGCTGTGATATCACTCCAGTTGTGTCGGAATCATCTGCAAAT
TTCATTGAAGGGCTGGTTATGGATGCCAAACAGAAAGGAGCAACATTCTG
TCAAGAGTACAGGAGAGAAGGCAACCTCATCTGGCCCTTGTTGCTTGACA
ATGTTAGGCCCGATATGAGGATCG
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