CX296726

Overview
NameCX296726
Unique NameCX296726
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12872 contig Ccv1_Contig12872:500..1223. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_PSEMY (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Pseudomonas mendocina (strain ymp) GN=astD PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.819e-18
Identity = 76/241 (31.54%), Postives = 116/241 (48.13%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGD-TGISISKKAGMIP---LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESV-ADSLXXXXXXXXXXLTVGPPEE--SCDITPVVSESSANFIEGLVMDAKQKGAT---FCQEYRREGNLIWPLLLD----NVRPD 714
            P GVV    P+N+P +L    I PAL+AGN ++ KP       A   V C+  AG P G+++ + G G E G  L  HP ++ + FTG   TG  +  +    P   L +E+GG +  IV + AD+D     I++  F  +GQRCT  + +LV +    D+L          L VG  +E  +  +  V+S  +A  +     D   KGAT      + + +  L+ P +LD    + RPD
Sbjct:  135 PHGVVAVFGPYNFPGHLPNGHIVPALLAGNCVLFKPSELTPKVAELTVKCWIEAGLPAGVLNLLQG-GRETGVALAGHPGIDGLFFTGSSRTGNLLHAQFAGRPDKILALEMGGNNPLIVDQVADIDAAVYTIVQSAFISAGQRCTCARRLLVPQGQWGDALLARLVQVAGQLKVGRFDEQPAPFMGSVISLQAAAQLMQAQADLLAKGATALLAMTQPQADAALLTPGILDVTAVSERPD 374          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_PSE14 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=astD PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.282e-17
Identity = 56/155 (36.13%), Postives = 85/155 (54.84%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGD-TGISISKKAGMIP---LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVME 486
            P GVV    P+N+P +L    I PAL+AGN++V KP       A   V C+  AG P G+++ + G G E G  L  +P ++ + FTG   TG ++ ++    P   L +E+GG +  IV +  D++    NII+  F  +GQRCT  + +LV E
Sbjct:  135 PHGVVAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSELTPKVAELTVKCWIEAGLPAGVLNLLQG-GRETGIALAANPGIDGLFFTGSSRTGDALHQQFAGRPDKILALEMGGNNPLIVDQVQDIEAAVYNIIQSAFISAGQRCTCARRLLVPE 288          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_MARAV (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=astD PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.282e-17
Identity = 74/234 (31.62%), Postives = 112/234 (47.86%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGDT-GISISKKAGMIP---LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVME-SVADSLXXXXXXXXXXLTVGPPEESCDITP----VVSESSANFIEGLVMDAKQKGATFCQEYRR---EGNLIWPLLLD 699
            P GVV    P+N+P +L    I PAL+AGN++V KP       A   V  +  AG P G+I+ V G GS+ G  L  H  ++ + FTG  T G  + ++ G  P   L +E+GG +  IV   +DLD    + ++  F  +GQRCT  + +LV +    D            +TV   E   D  P    V+S  +AN +        +KGAT   E ++   +  L+ P ++D
Sbjct:  139 PHGVVAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSELTPGVAELTVRLWEKAGLPDGVINLVQG-GSDTGKCLARHSLIDGLFFTGSSTVGHLLHEQFGGQPEKILALEMGGNNPLIVQNVSDLDGAVHHALQSAFLSAGQRCTCARRLLVPKGKKGDEFLARLVEVAARITVA--EFDADPQPFMGSVISAEAANQLLKAQAAMLEKGATSLLEMKQLKPDTGLLSPGIVD 369          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_COLP3 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=astD PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.282e-17
Identity = 61/195 (31.28%), Postives = 101/195 (51.79%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTG-GDTGISISKKAGMIP---LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCT-AVKVVLVMESVADSLXXXXXXXXXXLTVGPPEESCD--ITPVVSESSA 597
            P GVV    P+N+P +L    I PALIAGN++V KP       A  M+  +  AG P G+I+ V G+  E G  L  H  ++ + FTG  +TG  + ++    P   L +E+GG +  +V + +D+D V  +I++  F  +GQRCT A ++ +      D++          LT+G  ++     +  ++SE +A
Sbjct:  139 PHGVVAIFGPYNFPGHLPNGHIVPALIAGNTIVFKPSELTPRVAQEMLKLWEQAGLPNGVINLVQGE-VETGKALASHKLIDGLFFTGSSNTGHILHEQFAGQPGKILALEMGGNNPLVVKDVSDIDAVVHDIVQSAFVTTGQRCTCARRLFIEANEQGDAILARLIEVTKNLTIGYYDDEAQPFMGSMISEKAA 332          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ALDH2_BACSU (Probable aldehyde dehydrogenase ywdH OS=Bacillus subtilis GN=ywdH PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.282e-17
Identity = 63/188 (33.51%), Postives = 93/188 (49.47%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGDTGISISKKAG---MIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEESCDITPVVSE 588
            P G VL I P+NYP+ LA+S +  A+ AGN++VLKP ++   A   ++     + FP   ++   G G ++   L   P  + I FTG      I  +A    +IP+ +ELGGK  CIV +DAD+ L A  I+ G F+ +GQ C A   + V E +   L               PE +     +VSE
Sbjct:  104 PYGTVLVIAPWNYPLQLALSPLIGAIAAGNTVVLKP-SEYTPAVSAILSKLISSVFPTDYVAMAEG-GPDVSTALLQQP-FDYIFFTGSVAVGKIVMEAAAKQLIPVTLELGGKSPCIVHKDADIQLAAKRIVFGKFTNAGQTCIAPDYLFVHEDIKTKLTEEMKRAIREFYGPQPERNPQYGKIVSE 288          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: MSC7_YEAST (Putative aldehyde dehydrogenase-like protein YHR039C OS=Saccharomyces cerevisiae GN=MSC7 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.675e-17
Identity = 75/257 (29.18%), Postives = 120/257 (46.69%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVH----CFHLAGFPKGLIS---CV-TGKGSEIGDFLTMHPAVNCISFTGGDTGISISKKA---GMIPLQMELGGKDACIVLEDA-DLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPE--------ESCDITPVVSESSANFIEGLVMDAKQKGATFCQEYRR-------EGNLIWPLLLDNVRPDMRI 723
            PLGV+ +I  +NYP +  +  I  AL  GN++V+K   Q   ++   V     C         L+    C+   +  +  ++ T HP    I+F G         K     + P+ +ELGGKDA IVL+ A +LD +++ I++G F  SGQ C  ++ V+V +   D L          +T  P          E+ D+  ++S++  + +E LV DA  KGA   Q   R       +G+   P LL +V P+M+I
Sbjct:  237 PLGVISSIVSWNYPFHNLLGPIIAALFTGNAIVVKCSEQVVWSSEFFVELIRKCLEACDEDPDLVQLCYCLPPTENDDSANYFTSHPGFKHITFIGSQPVAHYILKCAAKSLTPVVVELGGKDAFIVLDSAKNLDALSSIIMRGTFQSSGQNCIGIERVIVSKENYDDL---VKILNDRMTANPLRQGSDIDHLENVDMGAMISDNRFDELEALVKDAVAKGARLLQGGSRFKHPKYPQGHYFQPTLLVDVTPEMKI 490          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: MMSA_ARATH (Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Arabidopsis thaliana GN=ALDH6B2 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.675e-17
Identity = 68/239 (28.45%), Postives = 111/239 (46.44%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGDT-GISISKKAGM--IPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVK-VVLVMESVADSLXXXXXXXXXXLTVGPPEESCDITPVVSESSANFIEGLVMDAKQKGATFCQEYR-------REGNLIWPLLLDNVRPDM 717
            PLGV   I PFN+P  + +     A+  GN+ +LKP  +   A++ +      AG P G+++ V G    + + +     +  +SF G +T G+ I  +A      +Q  +G K+  +VL DA++D     ++  GF  +GQRC A+  VV V ++ +             +T G  E   D+ PV+S+ +   I  L+      GA    + R        +GN I P +L  V PDM
Sbjct:  249 PLGVCAGICPFNFPAMIPLWMFPVAVTCGNTFILKPSEKDPGASVILAELAMEAGLPDGVLNIVHGTNDTV-NAICDDEDIRAVSFVGSNTAGMHIYARAAAKGKRIQSNMGAKNHGLVLPDANIDATLNALLAAGFGAAGQRCMALSTVVFVGDAKSWEDKLVERAKALKVTCG-SEPDADLGPVISKQAKERICRLIQSGVDDGAKLLLDGRDIVVPGYEKGNFIGPTILSGVTPDM 485          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_PSEPW (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Pseudomonas putida (strain W619) GN=astD PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.675e-17
Identity = 71/232 (30.60%), Postives = 111/232 (47.84%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGD-TGISISKKAGMIP---LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESV-ADSLXXXXXXXXXXLTVG--PPEESCDITPVVSESSANFIEGLVMDAKQKGATFCQEY---RREGNLIWPLLLD 699
            P GVV    P+N+P +L    I PAL+AGN +V KP       A   V+C+  AG P G+++ V G   E G  L  +P ++ + FTG   TG  + ++    P   L +E+GG +  +V    DLD     II+  F  +GQRCT  + +LV +    D+L          +TVG    + +  +  V+S  +A  +     +   KGAT   E    + +  L+ P ++D
Sbjct:  135 PHGVVAVFGPYNFPGHLPNGHIVPALLAGNCVVFKPSELTPKVAELTVNCWIAAGLPAGVLNLVQG-ARETGVALAANPGIDGLFFTGSSRTGNLLHQQFAGRPDKILALEMGGNNPLVVDGVKDLDAAVYTIIQSAFISAGQRCTCARRLLVPQGAWGDALVIRLVEVCKSITVGAFDQQPAPFMGSVISLQAARALVAAQSELLAKGATQLLEMTQPQADAALLTPGIID 365          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: THCA_RHOER (EPTC-inducible aldehyde dehydrogenase OS=Rhodococcus erythropolis GN=thcA PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.187e-17
Identity = 62/163 (38.04%), Postives = 89/163 (54.60%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTG-GDTGISISKKA--GMIPLQMELGGKDACIVLED--ADLDLVAANIIKGGFSYS---GQRCTAVKVVLVMESVAD 498
            PLGVV  I P+N+P+ +AV K+APAL AGN++VLKP  Q  V+ LH++        P G+++ V G G E G  L   P +  I+FTG   TG  I + A   +IP+ +ELGGK   +   D  A  D      ++G   ++   G+ CTA    L+ E + D
Sbjct:  155 PLGVVGQIIPWNFPILMAVWKLAPALAAGNAIVLKPAEQTPVSILHLIGIIGDL-LPAGVLNIVNGFGVEAGKPLASSPRIKKIAFTGETTTGRLIMQYASQNLIPVTLELGGKSPNVFFSDVLASNDDYQDKALEGFTMFALNQGEVCTAPSRALIQEDIFD 316          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_VIBCM (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=astD PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.187e-17
Identity = 71/231 (30.74%), Postives = 110/231 (47.62%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTG-GDTGISISKKAGMIP---LQMELGGKDACIVLED-ADLDLVAANIIKGGFSYSGQRCTAVKVVLV-MESVADSLXXXXXXXXXXLTVGPP--EESCDITPVVSESSANFIEGLVMDAKQKGATFCQEYRR-EGNLIWPLLLD 699
            PLGV+    P+N+P +L    I PAL+AGN++V KP  Q       ++  +  AG P G+I+ V G   E G  L     ++ + FTG  +TG  + ++    P   L +E+GG +  ++ E   DLD     II+  F  SGQRCT  + + V + +  D+L          L +  P  E +  + P+VSE++A  I     D +  G     E R      I P ++D
Sbjct:  134 PLGVMAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSEQTPWTGEVLMQLWQQAGLPAGVINLVQG-SKETGIALAQSRGIDGLLFTGSANTGHLLHRQFAGQPDKMLALEMGGNNPMVISEHYGDLDATVYTIIQSAFISSGQRCTCARRLYVPLGTKGDALLDKLVSVTANLRIDQPFAEPAPFMGPLVSEAAAQVILKAQADLQALGGKSLLEARALHAAFITPAIID 363          
The following BLAST results are available for this feature:
BLAST of CX296726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ASTD_PSEMY9.819e-1831.54N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_PSE141.282e-1736.13N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_MARAV1.282e-1731.62N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_COLP31.282e-1731.28N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ALDH2_BACSU1.282e-1733.51Probable aldehyde dehydrogenase ywdH OS=Bacillus s... [more]
MSC7_YEAST1.675e-1729.18Putative aldehyde dehydrogenase-like protein YHR03... [more]
MMSA_ARATH1.675e-1728.45Methylmalonate-semialdehyde dehydrogenase [acylati... [more]
ASTD_PSEPW1.675e-1730.60N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
THCA_RHOER2.187e-1738.04EPTC-inducible aldehyde dehydrogenase OS=Rhodococc... [more]
ASTD_VIBCM2.187e-1730.74N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]

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Properties
Property NameValue
Genbank descriptionC05802B04SK FerrChloL1 Citrus clementina cDNA clone C05802B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296726 ID=CX296726; Name=CX296726; organism=Citrus clementina; type=EST; length=724bp
GAGAGGACTAAATATTGTCTCACTTCAAACATTCCACTTGGTGTGGTTTT
GGCCATTCCACCATTCAACTATCCAGTCAATCTTGCCGTTTCCAAAATTG
CTCCTGCACTGATTGCTGGAAATTCCCTTGTGCTTAAGCCTCCTACTCAG
GGTGCTGTTGCTGCGCTTCACATGGTGCATTGCTTTCACTTGGCTGGTTT
TCCTAAAGGTCTTATAAGCTGTGTCACCGGGAAAGGTTCTGAGATTGGTG
ATTTCCTTACTATGCATCCTGCAGTGAACTGTATAAGCTTCACTGGTGGA
GACACTGGAATTTCAATCTCTAAGAAGGCTGGAATGATCCCTCTTCAGAT
GGAGTTGGGAGGCAAAGATGCTTGTATCGTGCTTGAGGATGCTGACCTTG
ATTTGGTTGCCGCAAACATAATAAAAGGAGGATTTTCTTACAGTGGTCAA
AGATGCACTGCAGTTAAGGTTGTCTTGGTGATGGAATCTGTAGCAGATTC
CCTGGTCGAGAAGGTTAAGGCTAAAGTGGTGAAACTGACAGTTGGCCCTC
CTGAAGAAAGCTGTGATATCACTCCAGTTGTGTCGGAATCATCTGCAAAT
TTCATTGAAGGGCTGGTTATGGATGCCAAACAGAAAGGAGCAACATTCTG
TCAAGAGTACAGGAGAGAAGGCAACCTCATCTGGCCCTTGTTGCTTGACA
ATGTTAGGCCCGATATGAGGATCG
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