CX296726

Overview
NameCX296726
Unique NameCX296726
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12872 contig Ccv1_Contig12872:500..1223. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_SHEFN (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Shewanella frigidimarina (strain NCIMB 400) GN=astD PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.187e-17
Identity = 54/155 (34.84%), Postives = 83/155 (53.55%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGD-TGISISKKAGMIP---LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVME 486
            P GVV    P+N+P +L    I PAL+AGN++V KP       A  M+ C+  AG P+G+++ V G+  E G  L  HP ++ + FTG   TG  + ++   +P   L +E+GG +  IV    D      +II+  +  SGQRCT  + + + E
Sbjct:  134 PHGVVAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSELTPKVAELMLKCWDKAGLPQGVVNLVQGE-VETGKALASHPQIDGLFFTGSSRTGHILHEQYAGLPGKILALEMGGNNPLIVKGVTDTKAAVHDIIQSAYISSGQRCTCARRLYIEE 287          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_BURVG (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=astD PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.187e-17
Identity = 54/153 (35.29%), Postives = 81/153 (52.94%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTG-GDTGISISKKAGMIP---LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLV 480
            P GVV    P+N+P +L    I PALIAGN++V KP       A   V  +H AG P G+++ V G+  + G  L  H  ++ + FTG  DTG  + K+ G  P   L +E+GG +  ++    D+D    + I+  F  +GQRCT  + + V
Sbjct:  135 PHGVVAVFGPYNFPGHLPNGHIVPALIAGNTVVFKPSELAPGVARATVEVWHEAGLPAGVLNLVQGE-KDTGIALANHRQIDGLFFTGSSDTGTLLHKQFGGRPEIVLALEMGGNNPLVIGAVEDIDAAVHHTIQSAFLSAGQRCTCARRIFV 286          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_BURA4 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Burkholderia ambifaria (strain MC40-6) GN=astD PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.187e-17
Identity = 55/153 (35.95%), Postives = 81/153 (52.94%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTG-GDTGISISKKAGMIP---LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLV 480
            P GVV    P+N+P +L    I PALIAGN++V KP       A   V  +  AG P G+++ V G+  + G  L  H  ++ + FTG  DTG  + K+ G  P   L +E+GG +  ++ E  DLD    + I+  F  +GQRCT  + + V
Sbjct:  135 PHGVVAVFGPYNFPGHLPNGHIVPALIAGNTVVFKPSELAPGVARATVEVWQEAGLPAGVLNLVQGE-KDTGIALANHRQIDGLFFTGSSDTGTLLHKQFGGRPEIVLALEMGGNNPLVIGEVEDLDAAVHHTIQSAFLSAGQRCTCARRIFV 286          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: MMSA_BOVIN (Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Bos taurus GN=ALDH6A1 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.857e-17
Identity = 55/239 (23.01%), Postives = 108/239 (45.19%), Query Frame = 1
Query:   31 IPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGDTGISISKKAGM---IPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEESCDITPVVSESSANFIEGLVMDAKQKGATFCQEYR-------REGNLIWPLLLDNVRPDM 717
            +PLGV   I PFN+P  + +     A++ GN+ ++KP  +   A + +   F  +G P G ++ + G+  E  +F+  HP +  ISF G +       + G      +Q  +G K+  +V+ DA+ +     ++   F  +GQRC A+   +++      L                +   D+ P+++  +   +  L+    ++GA+   + R         GN + P ++ NV+P+M
Sbjct:  176 LPLGVCAGIAPFNFPAMIPLWMFPMAMVCGNTFLMKPSERVPGATMLLAKLFQDSGAPDGTLNIIHGQ-HEAVNFICDHPDIKAISFVGSNQAGEYIFERGSRHGKRVQANMGAKNHGVVMPDANKENTLNQLVGAAFGAAGQRCMALSTAILVGEAKKWLPELVERAKKLRVNAGDQPGADLGPLITPQAKERVCNLIDSGTKEGASILLDGRSIKVKGYENGNFVGPTIISNVKPNM 413          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_PSEPF (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Pseudomonas fluorescens (strain Pf0-1) GN=astD PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.857e-17
Identity = 60/176 (34.09%), Postives = 89/176 (50.57%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGD-TGISISKKAGMIP---LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESV-ADSLXXXXXXXXXXLTVG 546
            P GVV    P+N+P +L    I PAL+AGNS++ KP       A   V C+  AG P G+++ + G   E G  L  +P ++ + FTG   TG  + ++    P   L +E+GG +  +V + AD+D     II+  F  +GQRCT  + +LV E    DSL          + VG
Sbjct:  135 PHGVVAVFGPYNFPGHLPNGHIVPALLAGNSVLFKPSELTPKVAELTVKCWIEAGLPAGVLNLLQG-ARETGIALAANPGIDGLFFTGSSRTGNHLHQQFAGRPDKILALEMGGNNPLVVDQVADIDAAVYTIIQSAFISAGQRCTCARRLLVPEGAWGDSLLKRLVEVSSTIEVG 309          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_PSEE4 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Pseudomonas entomophila (strain L48) GN=astD PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.857e-17
Identity = 61/176 (34.66%), Postives = 88/176 (50.00%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGD-TGISISKKAGMIP---LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESV-ADSLXXXXXXXXXXLTVG 546
            P GVV    P+N+P +L    I PAL+AGN +V KP       A   V C+  AG P G+++ V G   E G  L  +P ++ + FTG   TG  + ++    P   L +E+GG +  +V E  DLD     II+  F  +GQRCT  + +LV +    DSL          ++VG
Sbjct:  135 PHGVVAVFGPYNFPGHLPNGHIVPALLAGNCVVFKPSELTPKVAELTVQCWVEAGLPAGVLNLVQG-ARETGVALAANPGIDGLFFTGSSRTGNLLHQQFAGRPDKILALEMGGNNPLVVDEVKDLDAAVYTIIQSAFISAGQRCTCARRLLVPQGAWGDSLIQRLVDVSRSISVG 309          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_BURPS (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Burkholderia pseudomallei GN=astD PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.857e-17
Identity = 54/153 (35.29%), Postives = 82/153 (53.59%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTG-GDTGISISKKAGMIP---LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLV 480
            P GVV    P+N+P +L    I PALIAGN++V KP       A   V  +  AG P G+++ V G+  + G  L  H  ++ + FTG  DTG  + ++ G  P   L +E+GG +  +V +  D+D    + I+  F  +GQRCT  + +LV
Sbjct:  135 PHGVVAVFGPYNFPGHLPNGHIVPALIAGNTVVFKPSELAPGVARATVEIWRDAGLPAGVLNLVQGE-KDTGVALANHRQIDGLFFTGSSDTGTLLHRQFGGRPEIVLALEMGGNNPLVVADVEDIDAAVHHAIQSAFLSAGQRCTCARRILV 286          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_BURP6 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Burkholderia pseudomallei (strain 668) GN=astD PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.857e-17
Identity = 54/153 (35.29%), Postives = 82/153 (53.59%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTG-GDTGISISKKAGMIP---LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLV 480
            P GVV    P+N+P +L    I PALIAGN++V KP       A   V  +  AG P G+++ V G+  + G  L  H  ++ + FTG  DTG  + ++ G  P   L +E+GG +  +V +  D+D    + I+  F  +GQRCT  + +LV
Sbjct:  135 PHGVVAVFGPYNFPGHLPNGHIVPALIAGNTVVFKPSELAPGVARATVEIWRDAGLPAGVLNLVQGE-KDTGVALANHRQIDGLFFTGSSDTGTLLHRQFGGRPEIVLALEMGGNNPLVVADVEDIDAAVHHAIQSAFLSAGQRCTCARRILV 286          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_BURP1 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Burkholderia pseudomallei (strain 1710b) GN=astD PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.857e-17
Identity = 54/153 (35.29%), Postives = 82/153 (53.59%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTG-GDTGISISKKAGMIP---LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLV 480
            P GVV    P+N+P +L    I PALIAGN++V KP       A   V  +  AG P G+++ V G+  + G  L  H  ++ + FTG  DTG  + ++ G  P   L +E+GG +  +V +  D+D    + I+  F  +GQRCT  + +LV
Sbjct:  135 PHGVVAVFGPYNFPGHLPNGHIVPALIAGNTVVFKPSELAPGVARATVEIWRDAGLPAGVLNLVQGE-KDTGVALANHRQIDGLFFTGSSDTGTLLHRQFGGRPEIVLALEMGGNNPLVVADVEDIDAAVHHAIQSAFLSAGQRCTCARRILV 286          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_BURP0 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Burkholderia pseudomallei (strain 1106a) GN=astD PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.857e-17
Identity = 54/153 (35.29%), Postives = 82/153 (53.59%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTG-GDTGISISKKAGMIP---LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLV 480
            P GVV    P+N+P +L    I PALIAGN++V KP       A   V  +  AG P G+++ V G+  + G  L  H  ++ + FTG  DTG  + ++ G  P   L +E+GG +  +V +  D+D    + I+  F  +GQRCT  + +LV
Sbjct:  135 PHGVVAVFGPYNFPGHLPNGHIVPALIAGNTVVFKPSELAPGVARATVEIWRDAGLPAGVLNLVQGE-KDTGVALANHRQIDGLFFTGSSDTGTLLHRQFGGRPEIVLALEMGGNNPLVVADVEDIDAAVHHAIQSAFLSAGQRCTCARRILV 286          
The following BLAST results are available for this feature:
BLAST of CX296726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ASTD_SHEFN2.187e-1734.84N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_BURVG2.187e-1735.29N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_BURA42.187e-1735.95N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
MMSA_BOVIN2.857e-1723.01Methylmalonate-semialdehyde dehydrogenase [acylati... [more]
ASTD_PSEPF2.857e-1734.09N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_PSEE42.857e-1734.66N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_BURPS2.857e-1735.29N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_BURP62.857e-1735.29N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_BURP12.857e-1735.29N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_BURP02.857e-1735.29N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]

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Properties
Property NameValue
Genbank descriptionC05802B04SK FerrChloL1 Citrus clementina cDNA clone C05802B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296726 ID=CX296726; Name=CX296726; organism=Citrus clementina; type=EST; length=724bp
GAGAGGACTAAATATTGTCTCACTTCAAACATTCCACTTGGTGTGGTTTT
GGCCATTCCACCATTCAACTATCCAGTCAATCTTGCCGTTTCCAAAATTG
CTCCTGCACTGATTGCTGGAAATTCCCTTGTGCTTAAGCCTCCTACTCAG
GGTGCTGTTGCTGCGCTTCACATGGTGCATTGCTTTCACTTGGCTGGTTT
TCCTAAAGGTCTTATAAGCTGTGTCACCGGGAAAGGTTCTGAGATTGGTG
ATTTCCTTACTATGCATCCTGCAGTGAACTGTATAAGCTTCACTGGTGGA
GACACTGGAATTTCAATCTCTAAGAAGGCTGGAATGATCCCTCTTCAGAT
GGAGTTGGGAGGCAAAGATGCTTGTATCGTGCTTGAGGATGCTGACCTTG
ATTTGGTTGCCGCAAACATAATAAAAGGAGGATTTTCTTACAGTGGTCAA
AGATGCACTGCAGTTAAGGTTGTCTTGGTGATGGAATCTGTAGCAGATTC
CCTGGTCGAGAAGGTTAAGGCTAAAGTGGTGAAACTGACAGTTGGCCCTC
CTGAAGAAAGCTGTGATATCACTCCAGTTGTGTCGGAATCATCTGCAAAT
TTCATTGAAGGGCTGGTTATGGATGCCAAACAGAAAGGAGCAACATTCTG
TCAAGAGTACAGGAGAGAAGGCAACCTCATCTGGCCCTTGTTGCTTGACA
ATGTTAGGCCCGATATGAGGATCG
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