CX296726

Overview
NameCX296726
Unique NameCX296726
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12872 contig Ccv1_Contig12872:500..1223. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_BURMS (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Burkholderia mallei (strain SAVP1) GN=astD PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.857e-17
Identity = 54/153 (35.29%), Postives = 82/153 (53.59%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTG-GDTGISISKKAGMIP---LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLV 480
            P GVV    P+N+P +L    I PALIAGN++V KP       A   V  +  AG P G+++ V G+  + G  L  H  ++ + FTG  DTG  + ++ G  P   L +E+GG +  +V +  D+D    + I+  F  +GQRCT  + +LV
Sbjct:  135 PHGVVAVFGPYNFPGHLPNGHIVPALIAGNTVVFKPSELAPGVARATVEIWRDAGLPAGVLNLVQGE-KDTGVALANHRQIDGLFFTGSSDTGTLLHRQFGGRPEIVLALEMGGNNPLVVADVEDIDAAVHHAIQSAFLSAGQRCTCARRILV 286          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_BURMA (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Burkholderia mallei GN=astD PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.857e-17
Identity = 54/153 (35.29%), Postives = 82/153 (53.59%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTG-GDTGISISKKAGMIP---LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLV 480
            P GVV    P+N+P +L    I PALIAGN++V KP       A   V  +  AG P G+++ V G+  + G  L  H  ++ + FTG  DTG  + ++ G  P   L +E+GG +  +V +  D+D    + I+  F  +GQRCT  + +LV
Sbjct:  135 PHGVVAVFGPYNFPGHLPNGHIVPALIAGNTVVFKPSELAPGVARATVEIWRDAGLPAGVLNLVQGE-KDTGVALANHRQIDGLFFTGSSDTGTLLHRQFGGRPEIVLALEMGGNNPLVVADVEDIDAAVHHAIQSAFLSAGQRCTCARRILV 286          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_BURCJ (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=astD PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.857e-17
Identity = 54/153 (35.29%), Postives = 81/153 (52.94%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTG-GDTGISISKKAGMIP---LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLV 480
            P GVV    P+N+P +L    I PALIAGN++V KP       A   V  +  AG P G+++ V G+  + G  L  H  ++ + FTG  DTG  + K+ G  P   L +E+GG +  ++ E  D+D    + I+  F  +GQRCT  + + V
Sbjct:  135 PHGVVAVFGPYNFPGHLPNGHIVPALIAGNTVVFKPSELAPGVARATVEVWQAAGLPPGVLNLVQGE-KDTGIALANHRQIDGLFFTGSSDTGTLLHKQFGGRPEIVLALEMGGNNPLVIGEVEDVDAAVHHTIQSAFLSAGQRCTCARRIFV 286          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_PSEAE (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Pseudomonas aeruginosa GN=astD PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.731e-17
Identity = 63/180 (35.00%), Postives = 89/180 (49.44%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGD-TGISISKKAGMIP---LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESV-ADSLXXXXXXXXXXLTVGPPEE 558
            P GVV    P+N+P +L    I PAL+AGN +V KP       A   +  +  AG P G+++ V G G E G  L  H  ++ + FTG   TG  +  + G  P   L +E+GG +  +V E ADLD     II+  F  +GQRCT  + +LV +    D+L          L VG  +E
Sbjct:  135 PHGVVAVFGPYNFPGHLPNGHIVPALLAGNCVVFKPSELTPKVAELTLKAWIQAGLPAGVLNLVQG-GRETGVALAAHRGLDGLFFTGSSRTGNLLHSQFGGQPQKILALEMGGNNPLVVEEVADLDAAVYTIIQSAFISAGQRCTCARRLLVPQGAWGDALLARLVAVSATLRVGRFDE 313          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_BURCH (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Burkholderia cenocepacia (strain HI2424) GN=astD PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.731e-17
Identity = 54/153 (35.29%), Postives = 81/153 (52.94%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTG-GDTGISISKKAGMIP---LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLV 480
            P GVV    P+N+P +L    I PALIAGN++V KP       A   V  +  AG P G+++ V G+  + G  L  H  ++ + FTG  DTG  + K+ G  P   L +E+GG +  ++ E  D+D    + I+  F  +GQRCT  + + V
Sbjct:  135 PHGVVAVFGPYNFPGHLPNGHIVPALIAGNTVVFKPSELAPGVARATVEVWQEAGLPAGVLNLVQGE-KDTGIALANHRQIDGLFFTGSSDTGTLLHKQFGGRPEIVLALEMGGNNPLVIGEVEDIDAAVHHTIQSAFLSAGQRCTCARRIFV 286          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_BURCC (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Burkholderia cenocepacia (strain MC0-3) GN=astD PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.731e-17
Identity = 54/153 (35.29%), Postives = 81/153 (52.94%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTG-GDTGISISKKAGMIP---LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLV 480
            P GVV    P+N+P +L    I PALIAGN++V KP       A   V  +  AG P G+++ V G+  + G  L  H  ++ + FTG  DTG  + K+ G  P   L +E+GG +  ++ E  D+D    + I+  F  +GQRCT  + + V
Sbjct:  135 PHGVVAVFGPYNFPGHLPNGHIVPALIAGNTVVFKPSELAPGVARATVEVWQEAGLPAGVLNLVQGE-KDTGIALANHRQIDGLFFTGSSDTGTLLHKQFGGRPEIVLALEMGGNNPLVIGEVEDIDAAVHHTIQSAFLSAGQRCTCARRIFV 286          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_BURCA (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Burkholderia cenocepacia (strain AU 1054) GN=astD PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.731e-17
Identity = 54/153 (35.29%), Postives = 81/153 (52.94%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTG-GDTGISISKKAGMIP---LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLV 480
            P GVV    P+N+P +L    I PALIAGN++V KP       A   V  +  AG P G+++ V G+  + G  L  H  ++ + FTG  DTG  + K+ G  P   L +E+GG +  ++ E  D+D    + I+  F  +GQRCT  + + V
Sbjct:  135 PHGVVAVFGPYNFPGHLPNGHIVPALIAGNTVVFKPSELAPGVARATVEVWQEAGLPAGVLNLVQGE-KDTGIALANHRQIDGLFFTGSSDTGTLLHKQFGGRPEIVLALEMGGNNPLVIGEVEDIDAAVHHTIQSAFLSAGQRCTCARRIFV 286          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: MMSA_MOUSE (Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Mus musculus GN=Aldh6a1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.873e-17
Identity = 54/239 (22.59%), Postives = 107/239 (44.77%), Query Frame = 1
Query:   31 IPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGDTGISISKKAGM---IPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEESCDITPVVSESSANFIEGLVMDAKQKGATFCQEYRR-------EGNLIWPLLLDNVRPDM 717
            +PLGV   I PFN+P  + +     A++ GN+ ++KP  +   A + +      +G P G ++ + G+   + +F+  HP +  ISF G +       + G      +Q  +G K+  +V+ DA+ +     ++   F  +GQRC A+   +++      L                +   D+ P+++  +   +  L+    ++GA+   + RR        GN + P ++ NV+P M
Sbjct:  174 LPLGVCAGIAPFNFPAMIPLWMFPMAMVCGNTFLMKPSERVPGATMLLAKLLQDSGAPDGTLNIIHGQHDAV-NFICDHPDIKAISFVGSNQAGEYIFERGSRNGKRVQANMGAKNHGVVMPDANKENTLNQLVGAAFGAAGQRCMALSTAILVGEAKKWLPELVDRAKNLRVNAGDQPGADLGPLITPQAKERVCNLIDSGTKEGASILLDGRRIKVKGYENGNFVGPTIISNVKPSM 411          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: MMSA_DROME (Probable methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Drosophila melanogaster GN=CG17896 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.873e-17
Identity = 59/240 (24.58%), Postives = 110/240 (45.83%), Query Frame = 1
Query:   31 IPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGD-TGISISKKAGM--IPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEESCDITPVVSESSANFIEGLVMDAKQKGATFCQEYRR-------EGNLIWPLLLDNVRPDMR 720
            +PLGV   + PFN+P  + +     A+  GN+++LKP  +   A + ++   + AG P G+++ + G+   + +F+   P +  +SF G D  G  I ++AG     +Q  +G K+  I+L DA+ +     +    F  +GQRC A+   + +      +                    D+ PV+S +S   I  L+    ++GA    + R+       +G  + P +L +V P M+
Sbjct:  160 LPLGVTAGVAPFNFPAMIPLWMFPVAITTGNTMLLKPSERVPGATMLLMELLNEAGCPPGVVNVIHGQHDAV-NFICDAPEIKAVSFVGSDQAGKYIYERAGKNGKRVQSNMGAKNHGIILGDANKENTLNQLAGAAFGAAGQRCMALSTAVFVGDAQAWIPDLVERAQKLKVNAGHVPGTDVGPVISAASRQRINDLIESGVKEGAKLILDGRKITVPGYEDGYFVGPTILSDVTPSMK 398          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: MMSA_ANOGA (Probable methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Anopheles gambiae GN=AGAP002499 PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.873e-17
Identity = 58/241 (24.07%), Postives = 111/241 (46.06%), Query Frame = 1
Query:   28 NIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGD-TGISISKKAGM--IPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEESCDITPVVSESSANFIEGLVMDAKQKGATFCQEYR-------REGNLIWPLLLDNVRPDMR 720
            ++PLGV   I PFN+P  + +     A+  GN+ ++KP  +   A + ++   + AG P G+++ + G    + +F+  +P +  +SF G D  G  I ++AG     +Q  +G K+  +++ DA+ +     +    F  +GQRC A+   + +    + +                    D+ PV+S  S   I  LV    ++GA    + R        +GN + P ++ +V P+M+
Sbjct:  160 HLPLGVTAGIAPFNFPAMIPLWMFPVAITCGNTSIIKPSERVPGATMLLMEMLNEAGCPPGVVNVIHGAHDAV-NFVCDNPDIRAVSFVGSDQAGKYIYERAGRNGKRVQCNMGAKNHGVIMADANKENTLNQLAGAAFGAAGQRCMALSTAVFVGEARNWIPDLVERARKLKVNAGHLPGTDLGPVISPQSKQRINELVESGAKEGAKIVLDGRNIKVEGFEKGNFVGPTIISDVTPNMK 399          
The following BLAST results are available for this feature:
BLAST of CX296726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ASTD_BURMS2.857e-1735.29N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_BURMA2.857e-1735.29N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_BURCJ2.857e-1735.29N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_PSEAE3.731e-1735.00N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_BURCH3.731e-1735.29N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_BURCC3.731e-1735.29N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_BURCA3.731e-1735.29N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
MMSA_MOUSE4.873e-1722.59Methylmalonate-semialdehyde dehydrogenase [acylati... [more]
MMSA_DROME4.873e-1724.58Probable methylmalonate-semialdehyde dehydrogenase... [more]
MMSA_ANOGA4.873e-1724.07Probable methylmalonate-semialdehyde dehydrogenase... [more]

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Properties
Property NameValue
Genbank descriptionC05802B04SK FerrChloL1 Citrus clementina cDNA clone C05802B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296726 ID=CX296726; Name=CX296726; organism=Citrus clementina; type=EST; length=724bp
GAGAGGACTAAATATTGTCTCACTTCAAACATTCCACTTGGTGTGGTTTT
GGCCATTCCACCATTCAACTATCCAGTCAATCTTGCCGTTTCCAAAATTG
CTCCTGCACTGATTGCTGGAAATTCCCTTGTGCTTAAGCCTCCTACTCAG
GGTGCTGTTGCTGCGCTTCACATGGTGCATTGCTTTCACTTGGCTGGTTT
TCCTAAAGGTCTTATAAGCTGTGTCACCGGGAAAGGTTCTGAGATTGGTG
ATTTCCTTACTATGCATCCTGCAGTGAACTGTATAAGCTTCACTGGTGGA
GACACTGGAATTTCAATCTCTAAGAAGGCTGGAATGATCCCTCTTCAGAT
GGAGTTGGGAGGCAAAGATGCTTGTATCGTGCTTGAGGATGCTGACCTTG
ATTTGGTTGCCGCAAACATAATAAAAGGAGGATTTTCTTACAGTGGTCAA
AGATGCACTGCAGTTAAGGTTGTCTTGGTGATGGAATCTGTAGCAGATTC
CCTGGTCGAGAAGGTTAAGGCTAAAGTGGTGAAACTGACAGTTGGCCCTC
CTGAAGAAAGCTGTGATATCACTCCAGTTGTGTCGGAATCATCTGCAAAT
TTCATTGAAGGGCTGGTTATGGATGCCAAACAGAAAGGAGCAACATTCTG
TCAAGAGTACAGGAGAGAAGGCAACCTCATCTGGCCCTTGTTGCTTGACA
ATGTTAGGCCCGATATGAGGATCG
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