CX296726

Overview
NameCX296726
Unique NameCX296726
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12872 contig Ccv1_Contig12872:500..1223. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_PSEFS (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Pseudomonas fluorescens (strain SBW25) GN=astD PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.873e-17
Identity = 59/176 (33.52%), Postives = 89/176 (50.57%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGD-TGISISKKAGMIP---LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESV-ADSLXXXXXXXXXXLTVG 546
            P GVV    P+N+P +L    I PAL+AGN+++ KP       A   V C+  AG P G+++ + G   E G  L  +P ++ + FTG   TG  + ++    P   L +E+GG +  +V E AD+D     II+  F  +GQRCT  + +LV E    D+L          + VG
Sbjct:  135 PHGVVAVFGPYNFPGHLPNGHIVPALLAGNTVLFKPSELTPKVAELTVQCWIEAGLPAGVLNLLQG-ARETGIALAANPGIDGLFFTGSSRTGNHLHQQFSGRPDKILALEMGGNNPLVVDEVADVDAAVYTIIQSAFISAGQRCTCARRLLVPEGAWGDALLARLVAVSATIAVG 309          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_PSEF5 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=astD PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.873e-17
Identity = 55/153 (35.95%), Postives = 82/153 (53.59%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGD-TGISISKKAGMIP---LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLV 480
            P GVV    P+N+P +L    I PAL+AGNS++ KP       A   V C+  AG P G+++ + G   E G  L  +P ++ + FTG   TG  + ++    P   L +E+GG +  +V + ADLD     II+  F  +GQRCT  + +LV
Sbjct:  135 PHGVVAVFGPYNFPGHLPNGHIVPALLAGNSVLFKPSELTPKVAELTVQCWIEAGLPAGVLNLLQG-ARETGIALAANPGIDGLFFTGSSRTGNHLHQQFAGRPDKILALEMGGNNPLVVEQVADLDAAVYTIIQSAFISAGQRCTCARRLLV 286          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_BURXL (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Burkholderia xenovorans (strain LB400) GN=astD PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.873e-17
Identity = 55/158 (34.81%), Postives = 82/158 (51.90%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTG-GDTGISISKKAGMIP---LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVA 495
            P GVV    P+N+P +L    I PALIAGN++V KP       A   V  +  AG P G+++ V G+  + G  L  H  ++ + FTG  DTG  + K+ G  P   L +E+GG +  ++   AD+D    + I+  F  +GQRCT  + + V    A
Sbjct:  135 PHGVVAVFGPYNFPGHLPNGHIVPALIAGNAVVFKPSELAPGVAALTVQIWRDAGLPAGVLNLVQGE-KDTGIALANHRQIDGLFFTGSSDTGTLLHKQFGGRPEIVLALEMGGNNPLVIGPVADVDAAVHHTIQSAFLSAGQRCTCARRIFVPNDAA 291          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_BURS3 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Burkholderia sp. (strain 383) GN=astD PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.873e-17
Identity = 54/153 (35.29%), Postives = 81/153 (52.94%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTG-GDTGISISKKAGMIP---LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLV 480
            P GVV    P+N+P +L    I PALIAGN++V KP       A   V  +  AG P G+++ V G+  + G  L  H  ++ + FTG  DTG  + K+ G  P   L +E+GG +  ++ E  D+D    + I+  F  +GQRCT  + + V
Sbjct:  135 PHGVVAVFGPYNFPGHLPNGHIVPALIAGNAVVFKPSELAPGVARATVEVWKEAGLPDGVLNLVQGE-KDTGIALANHRQIDGLFFTGSSDTGTLLHKQFGGRPEIVLALEMGGNNPLVIGEVEDIDAAVHHTIQSAFLSAGQRCTCARRIFV 286          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_BURCM (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=astD PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.873e-17
Identity = 54/153 (35.29%), Postives = 81/153 (52.94%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTG-GDTGISISKKAGMIP---LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLV 480
            P GVV    P+N+P +L    I PALIAGN++V KP       A   V  +  AG P G+++ V G+  + G  L  H  ++ + FTG  DTG  + ++ G  P   L +E+GG +  ++ E  DLD    + I+  F  +GQRCT  + + V
Sbjct:  135 PHGVVAVFGPYNFPGHLPNGHIVPALIAGNTVVFKPSELAPGVARATVEVWQEAGLPAGVLNLVQGE-KDTGIALANHRQIDGLFFTGSSDTGTLLHRQFGGRPEIVLALEMGGNNPLVIGEVEDLDAAVHHTIQSAFLSAGQRCTCARRIFV 286          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_VIBVU (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Vibrio vulnificus GN=astD PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 6.365e-17
Identity = 64/199 (32.16%), Postives = 101/199 (50.75%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTG-GDTGISISKKAGMIP---LQMELGGKDACIVLED-ADLDLVAANIIKGGFSYSGQRCT-AVKVVLVMESVADSLXXXXXXXXXXLTVGPP--EESCDITPVVSESSANFI 606
            PLGV+    P+N+P +L    I PAL+AGN++V KP  Q        +  +  AG P+G+I+ V G G E G  L     ++ + FTG  +TG  + ++    P   L +E+GG +  ++ +   DLD     II+  F  +GQRCT A ++ + +    D+L          L V  P  E +  + P +S ++ANFI
Sbjct:  134 PLGVMAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSEQTPWTGELAMKLWQAAGLPQGVINLVQG-GKETGIALAESKGIDGLLFTGSANTGHLLHRQFAGQPGKMLALEMGGNNPMVITDHYGDLDATVYTIIQSAFISAGQRCTCARRLYIPLGEKGDALITRLVEATKKLRVDQPFAEPAPFMGPQISVAAANFI 331          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_PSESM (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Pseudomonas syringae pv. tomato GN=astD PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.365e-17
Identity = 54/155 (34.84%), Postives = 84/155 (54.19%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGD-TGISISKKAGMIP---LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVME 486
            P GVV    P+N+P +L    I PAL+AGN+++ KP       A   V C+  AG P G+++ + G G E G  L  +P ++ + FTG   TG ++ ++    P   L +E+GG +  +V +  D+D     II+  F  +GQRCT  + +LV E
Sbjct:  135 PHGVVAVFGPYNFPGHLPNGHIVPALLAGNTVLFKPSELTPKVAELTVKCWIEAGLPAGVLNLLQG-GRETGIALAANPGIDGLFFTGSSRTGNALHQQFAGRPDKILALEMGGNNPLVVDQVQDIDAAVYTIIQSAFISAGQRCTCARRLLVPE 288          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_CHRVO (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Chromobacterium violaceum GN=astD PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.365e-17
Identity = 77/240 (32.08%), Postives = 114/240 (47.50%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGD-TGISISKKAGMIP---LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESV-ADSLXXXXXXXXXXLTVG--PPEESCDITPVVSESSANFIEGLVMDAKQKGATFCQEYRR--EG-NLIWPLLLDN---VRPD 714
            P GVV    P+N+P +L    I PAL+AGNS++ KP       A   V  +  AG P G+I  V G   + G  L  H  ++ + FTG   TG  + K+    P   L +E+GG +  IV E AD+D    ++I+  F  +GQRCT  + +LV +    D+           L VG    E +  +  V+S ++A+ +     D    G T     RR  EG  ++ P ++D    VRPD
Sbjct:  135 PHGVVAVFGPYNFPGHLPNGHIVPALLAGNSVIFKPSELTPWTAEETVKLWAEAGLPAGVIGLVQG-AKDTGVALAGHEGLDGLFFTGSSATGALLHKQFSGRPDKILALEMGGNNPLIVGEVADVDGAVHHVIQSAFVSAGQRCTCARRLLVPQGEWGDAFVARLVEVAGKLRVGKFDAEPAPFLGAVISNAAADALLKAQDDLVAAGGTPLLAMRRLEEGAAMLTPGIIDTTAAVRPD 373          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_BURM1 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=astD PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.365e-17
Identity = 54/153 (35.29%), Postives = 81/153 (52.94%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTG-GDTGISISKKAGMIP---LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLV 480
            P GVV    P+N+P +L    I PALIAGN++V KP       A   V  +  AG P G+++ V G+  + G  L  H  ++ + FTG  DTG  + K+ G  P   L +E+GG +  ++ E  D+D    + I+  F  +GQRCT  + + V
Sbjct:  135 PHGVVAVFGPYNFPGHLPNGHIVPALIAGNTVVFKPSELAPGVAQATVEVWKDAGLPAGVLNLVQGE-KDTGIALANHRQIDGLFFTGSSDTGTLLHKQFGGRPEIVLALEMGGNNPLVIGEVEDIDAAVHHTIQSAFLSAGQRCTCARRIFV 286          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_AERHH (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=astD PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.312e-17
Identity = 56/157 (35.67%), Postives = 86/157 (54.78%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGD-TGISISKKAGMIP---LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESV 492
            P GVV    P+N+P +L    I PALIAGN++V KP     + A  M+  +  AG PKG+++ V G+  + G  L  +P ++ + FTG   TG  + ++    P   L +E+GG +  IV + +D+D     I++  F  SGQRCT  + + V  SV
Sbjct:  137 PHGVVAVFGPYNFPGHLPNGHIVPALIAGNTVVFKPSELTPMVAEAMLKIWQEAGLPKGVLNLVQGE-VDTGKALAGNPDIDGLFFTGSSRTGHFLHQQFAGQPGKILALEMGGNNPLIVKDVSDIDGAVHAIVQSAFITSGQRCTCSRRLFVERSV 292          
The following BLAST results are available for this feature:
BLAST of CX296726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ASTD_PSEFS4.873e-1733.52N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_PSEF54.873e-1735.95N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_BURXL4.873e-1734.81N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_BURS34.873e-1735.29N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_BURCM4.873e-1735.29N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_VIBVU6.365e-1732.16N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_PSESM6.365e-1734.84N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_CHRVO6.365e-1732.08N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_BURM16.365e-1735.29N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_AERHH8.312e-1735.67N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05802B04SK FerrChloL1 Citrus clementina cDNA clone C05802B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296726 ID=CX296726; Name=CX296726; organism=Citrus clementina; type=EST; length=724bp
GAGAGGACTAAATATTGTCTCACTTCAAACATTCCACTTGGTGTGGTTTT
GGCCATTCCACCATTCAACTATCCAGTCAATCTTGCCGTTTCCAAAATTG
CTCCTGCACTGATTGCTGGAAATTCCCTTGTGCTTAAGCCTCCTACTCAG
GGTGCTGTTGCTGCGCTTCACATGGTGCATTGCTTTCACTTGGCTGGTTT
TCCTAAAGGTCTTATAAGCTGTGTCACCGGGAAAGGTTCTGAGATTGGTG
ATTTCCTTACTATGCATCCTGCAGTGAACTGTATAAGCTTCACTGGTGGA
GACACTGGAATTTCAATCTCTAAGAAGGCTGGAATGATCCCTCTTCAGAT
GGAGTTGGGAGGCAAAGATGCTTGTATCGTGCTTGAGGATGCTGACCTTG
ATTTGGTTGCCGCAAACATAATAAAAGGAGGATTTTCTTACAGTGGTCAA
AGATGCACTGCAGTTAAGGTTGTCTTGGTGATGGAATCTGTAGCAGATTC
CCTGGTCGAGAAGGTTAAGGCTAAAGTGGTGAAACTGACAGTTGGCCCTC
CTGAAGAAAGCTGTGATATCACTCCAGTTGTGTCGGAATCATCTGCAAAT
TTCATTGAAGGGCTGGTTATGGATGCCAAACAGAAAGGAGCAACATTCTG
TCAAGAGTACAGGAGAGAAGGCAACCTCATCTGGCCCTTGTTGCTTGACA
ATGTTAGGCCCGATATGAGGATCG
back to top