CX296726

Overview
NameCX296726
Unique NameCX296726
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12872 contig Ccv1_Contig12872:500..1223. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD2_SHEDO (N-succinylglutamate 5-semialdehyde dehydrogenase 2 OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=astD2 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.312e-17
Identity = 55/158 (34.81%), Postives = 83/158 (52.53%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGD-TGISISKKAGMIP---LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVA 495
            P GVV    P+N+P +L    I PAL+AGN++V KP       A  M+  +  AG PKG+I+ V G+  E G  L  HP ++ + FTG   TG  + ++    P   L +E+GG +  IV   +D      +II+  +  SGQRCT  + + + +  A
Sbjct:  134 PHGVVAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSELTPKVAEEMLKLWDKAGLPKGVINLVQGE-VETGKALASHPQIDGLFFTGSSRTGHILHQQYAGHPGKILALEMGGNNPLIVKGVSDTKAAVHDIIQSAYISSGQRCTCARRLYIEQGAA 290          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: MMSA_HUMAN (Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Homo sapiens GN=ALDH6A1 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.086e-16
Identity = 54/239 (22.59%), Postives = 108/239 (45.19%), Query Frame = 1
Query:   31 IPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGDTGISISKKAGM---IPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEESCDITPVVSESSANFIEGLVMDAKQKGATFCQEYRR-------EGNLIWPLLLDNVRPDM 717
            +PLGV   I PFN+P  + +     A++ GN+ ++KP  +   A + +      +G P G ++ + G+  E  +F+  HP +  ISF G +       + G      +Q  +G K+  +V+ DA+ +     ++   F  +GQRC A+   +++      L                +   D+ P+++  +   +  L+    ++GA+   + R+        GN + P ++ NV+P+M
Sbjct:  174 LPLGVCAGIAPFNFPAMIPLWMFPMAMVCGNTFLMKPSERVPGATMLLAKLLQDSGAPDGTLNIIHGQ-HEAVNFICDHPDIKAISFVGSNKAGEYIFERGSRHGKRVQANMGAKNHGVVMPDANKENTLNQLVGAAFGAAGQRCMALSTAVLVGEAKKWLPELVEHAKNLRVNAGDQPGADLGPLITPQAKERVCNLIDSGTKEGASILLDGRKIKVKGYENGNFVGPTIISNVKPNM 411          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_SHEHH (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Shewanella halifaxensis (strain HAW-EB4) GN=astD PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.086e-16
Identity = 58/177 (32.77%), Postives = 90/177 (50.85%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGD-TGISISKKAGMIP---LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVME-SVADSLXXXXXXXXXXLTVGP 549
            P GVV    P+N+P +L    I PAL+AGN++V KP       A  M+  +  AG P G+I+ V G+  E G  L  HP ++ + FTG   TG  + ++    P   L +E+GG +  I+ + AD      +II+  +  +GQRCT  + + V + +  D+L          + VGP
Sbjct:  134 PHGVVAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSELTPKVAELMLKLWEKAGLPAGVINLVQGE-VETGKALAAHPQIDGLFFTGSSRTGHILHQQYAGDPGKILALEMGGNNPLIIKDVADTKAAVHDIIQSAYISAGQRCTCARRLYVEKGATGDALLEQLVAAIKQIKVGP 309          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_PSEU2 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=astD PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.086e-16
Identity = 55/155 (35.48%), Postives = 83/155 (53.55%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGD-TGISISKKAGMIP---LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVME 486
            P GVV    P+N+P +L    I PAL+AGN ++ KP       A   V C+  AG P G+++ + G G E G  L  +P ++ + FTG   TG ++ ++    P   L +E+GG +  IV +  D+D     II+  F  +GQRCT  + +LV E
Sbjct:  135 PHGVVAVFGPYNFPGHLPNGHIVPALLAGNVVLFKPSELTPKVAELTVKCWIEAGLPAGVLNLLQG-GRETGIALAANPGIDGLFFTGSSRTGNALHQQFAGRPDKILALEMGGNNPLIVDQVQDIDAAVYTIIQSAFISAGQRCTCARRLLVPE 288          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: MMSA_RAT (Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Rattus norvegicus GN=Aldh6a1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.418e-16
Identity = 54/239 (22.59%), Postives = 107/239 (44.77%), Query Frame = 1
Query:   31 IPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTGGDTGISISKKAGM---IPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADSLXXXXXXXXXXLTVGPPEESCDITPVVSESSANFIEGLVMDAKQKGATFCQEYRR-------EGNLIWPLLLDNVRPDM 717
            +PLGV   I PFN+P  + +     A++ GN+ ++KP  +   A + +      +G P G ++ + G+  E  +F+  HP +  ISF G +       + G      +Q  +G K+  +V+ DA+ +     ++   F  +GQRC A+   +++      L                +   D+ P+++  +   +  L+    ++GA+   + R+        GN + P ++ NV+P M
Sbjct:  174 LPLGVCAGIAPFNFPAMIPLWMFPMAMVCGNTFLMKPSERVPGATMLLAKLLQDSGAPDGTLNIIHGQ-HEAVNFICDHPDIKAISFVGSNQAGEYIFERGSRNGKRVQANMGAKNHGVVMPDANKENTLNQLVGAAFGAAGQRCMALSTAVLVGEAKKWLPELVERAKNLRVNAGDQPGADLGPLITPQAKERVCNLIDSGAKEGASILLDGRKIKVKGYENGNFVGPTIISNVKPSM 411          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_YERPY (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=astD PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.852e-16
Identity = 55/153 (35.95%), Postives = 81/153 (52.94%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTG-GDTGISISKKAGMIP---LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLV 480
            P GV+    P+N+P +L    I PAL+AGN++V KP       A   V  +  AG P G+++ V G G E G+ L   P ++ + FTG   TG  + ++    P   L +E+GG +A IV +  D D V    I+  F  +GQRCT  + +LV
Sbjct:  148 PHGVLAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSELTPWTAEETVKLWQQAGIPDGVLNLVQG-GRETGEALAAQPDIDGLLFTGSAHTGYHLHRQLAGQPEKMLALEMGGNNALIVEQVKDRDAVVNLAIQSAFISAGQRCTCSRRLLV 299          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_YERPG (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=astD PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.852e-16
Identity = 55/153 (35.95%), Postives = 81/153 (52.94%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTG-GDTGISISKKAGMIP---LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLV 480
            P GV+    P+N+P +L    I PAL+AGN++V KP       A   V  +  AG P G+++ V G G E G+ L   P ++ + FTG   TG  + ++    P   L +E+GG +A IV +  D D V    I+  F  +GQRCT  + +LV
Sbjct:  148 PHGVLAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSELTPWTAEETVKLWQQAGIPDGVLNLVQG-GRETGEALAAQPDIDGLLFTGSAHTGYHLHRQLAGQPEKMLALEMGGNNALIVEQVKDRDAVVNLAIQSAFISAGQRCTCSRRLLV 299          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_YERPE (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Yersinia pestis GN=astD PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.852e-16
Identity = 55/153 (35.95%), Postives = 81/153 (52.94%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTG-GDTGISISKKAGMIP---LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLV 480
            P GV+    P+N+P +L    I PAL+AGN++V KP       A   V  +  AG P G+++ V G G E G+ L   P ++ + FTG   TG  + ++    P   L +E+GG +A IV +  D D V    I+  F  +GQRCT  + +LV
Sbjct:  148 PHGVLAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSELTPWTAEETVKLWQQAGIPDGVLNLVQG-GRETGEALAAQPDIDGLLFTGSAHTGYHLHRQLAGQPEKMLALEMGGNNALIVEQVKDRDAVVNLAIQSAFISAGQRCTCSRRLLV 299          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_YERPA (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=astD PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.852e-16
Identity = 55/153 (35.95%), Postives = 81/153 (52.94%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTG-GDTGISISKKAGMIP---LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLV 480
            P GV+    P+N+P +L    I PAL+AGN++V KP       A   V  +  AG P G+++ V G G E G+ L   P ++ + FTG   TG  + ++    P   L +E+GG +A IV +  D D V    I+  F  +GQRCT  + +LV
Sbjct:  148 PHGVLAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSELTPWTAEETVKLWQQAGIPDGVLNLVQG-GRETGEALAAQPDIDGLLFTGSAHTGYHLHRQLAGQPEKMLALEMGGNNALIVEQVKDRDAVVNLAIQSAFISAGQRCTCSRRLLV 299          
BLAST of CX296726 vs. ExPASy Swiss-Prot
Match: ASTD_ERWT9 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=astD PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.852e-16
Identity = 54/158 (34.18%), Postives = 82/158 (51.90%), Query Frame = 1
Query:   34 PLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPAVNCISFTG-GDTGISISKKAGMIP---LQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVA 495
            P GV+    P+N+P +L    I PAL+AGN ++ KP     + A   +  ++ AG P+G++  + G G E G  L   P V+ I FTG   TG  + ++    P   L +E+GG +A IV +  D+D      I+  F  +GQRCT  + +LV    A
Sbjct:  130 PHGVMAVFGPYNFPGHLPNGHIVPALLAGNCVLFKPSELTPLTAEIAMRLWNHAGLPQGVLHLLQG-GRETGQALVQQPQVDGILFTGSAATGYQLHRQLAGQPEKMLALEMGGNNALIVEDPDDIDAAVHIAIQSAFISAGQRCTCARRLLVRRGAA 286          
The following BLAST results are available for this feature:
BLAST of CX296726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ASTD2_SHEDO8.312e-1734.81N-succinylglutamate 5-semialdehyde dehydrogenase 2... [more]
MMSA_HUMAN1.086e-1622.59Methylmalonate-semialdehyde dehydrogenase [acylati... [more]
ASTD_SHEHH1.086e-1632.77N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_PSEU21.086e-1635.48N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
MMSA_RAT1.418e-1622.59Methylmalonate-semialdehyde dehydrogenase [acylati... [more]
ASTD_YERPY1.852e-1635.95N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_YERPG1.852e-1635.95N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_YERPE1.852e-1635.95N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_YERPA1.852e-1635.95N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_ERWT91.852e-1634.18N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]

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Properties
Property NameValue
Genbank descriptionC05802B04SK FerrChloL1 Citrus clementina cDNA clone C05802B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296726 ID=CX296726; Name=CX296726; organism=Citrus clementina; type=EST; length=724bp
GAGAGGACTAAATATTGTCTCACTTCAAACATTCCACTTGGTGTGGTTTT
GGCCATTCCACCATTCAACTATCCAGTCAATCTTGCCGTTTCCAAAATTG
CTCCTGCACTGATTGCTGGAAATTCCCTTGTGCTTAAGCCTCCTACTCAG
GGTGCTGTTGCTGCGCTTCACATGGTGCATTGCTTTCACTTGGCTGGTTT
TCCTAAAGGTCTTATAAGCTGTGTCACCGGGAAAGGTTCTGAGATTGGTG
ATTTCCTTACTATGCATCCTGCAGTGAACTGTATAAGCTTCACTGGTGGA
GACACTGGAATTTCAATCTCTAAGAAGGCTGGAATGATCCCTCTTCAGAT
GGAGTTGGGAGGCAAAGATGCTTGTATCGTGCTTGAGGATGCTGACCTTG
ATTTGGTTGCCGCAAACATAATAAAAGGAGGATTTTCTTACAGTGGTCAA
AGATGCACTGCAGTTAAGGTTGTCTTGGTGATGGAATCTGTAGCAGATTC
CCTGGTCGAGAAGGTTAAGGCTAAAGTGGTGAAACTGACAGTTGGCCCTC
CTGAAGAAAGCTGTGATATCACTCCAGTTGTGTCGGAATCATCTGCAAAT
TTCATTGAAGGGCTGGTTATGGATGCCAAACAGAAAGGAGCAACATTCTG
TCAAGAGTACAGGAGAGAAGGCAACCTCATCTGGCCCTTGTTGCTTGACA
ATGTTAGGCCCGATATGAGGATCG
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