CX296728
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 5.052e-27 Identity = 62/134 (46.27%), Postives = 80/134 (59.70%), Query Frame = 3 Query: 309 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 K +A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L +Q ++ I CQ +L Sbjct: 37 KTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPS--LVHAQSILAIWACQVIL 167
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 5.052e-27 Identity = 65/153 (42.48%), Postives = 87/153 (56.86%), Query Frame = 3 Query: 252 LQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 L+ R +K + D +A +S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I Q +L Sbjct: 17 LKQRDELVRKVGVSDGRFSMRRTVKAVPQSIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGV-QFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWATQVVL 166
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 5.052e-27 Identity = 64/144 (44.44%), Postives = 86/144 (59.72%), Query Frame = 3 Query: 288 LQDSSKF---KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 +Q ++KF K ++ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L +Q ++ I CQ +L Sbjct: 17 IQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPS--LVHAQSILAIWACQVVL 157
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 6.598e-27 Identity = 71/167 (42.51%), Postives = 93/167 (55.69%), Query Frame = 3 Query: 213 AVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 A KA+ SP E+ N + +K A + A+ A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L +Q ++ I CQ +L Sbjct: 14 AGKAVKLSPSSSEITGNGRVTMRKTATK--------AKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPS--LVHAQSILAIWACQVVL 169
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 6.598e-27 Identity = 60/125 (48.00%), Postives = 78/125 (62.40%), Query Frame = 3 Query: 336 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 +S+WYGE+RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H RWAMLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I Q +L Sbjct: 18 QSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGV-TFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWASQVVL 139
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 6.598e-27 Identity = 59/125 (47.20%), Postives = 78/125 (62.40%), Query Frame = 3 Query: 336 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 +S+WYGE+RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H RWAMLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ + Q +L Sbjct: 46 QSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAVWASQVVL 167
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.125e-26 Identity = 71/170 (41.76%), Postives = 93/170 (54.71%), Query Frame = 3 Query: 204 PFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 P A KA+ SP E+ N + +K A + A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L +Q ++ I CQ +L Sbjct: 11 PSFAGKAVKLSPSSSEITGNGKVTMRKTASK--------AKTVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPS--LVHAQSILAIWACQVVL 169
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.470e-26 Identity = 59/125 (47.20%), Postives = 78/125 (62.40%), Query Frame = 3 Query: 336 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 +S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I Q +L Sbjct: 44 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWAVQVVL 165
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.470e-26 Identity = 59/125 (47.20%), Postives = 78/125 (62.40%), Query Frame = 3 Query: 336 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 +S+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P +L +Q ++ I Q +L Sbjct: 44 QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNP--NLVHAQSILAIWAVQVVL 165
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.470e-26 Identity = 60/125 (48.00%), Postives = 78/125 (62.40%), Query Frame = 3 Query: 336 ESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 ES+WYG +RP++LGP PSYLTGE PGDYG+D AGLS DP F + E++H+RWAMLGALG PE+L+ G E VW++ G LDYLG P +L +Q ++ I Q +L Sbjct: 46 ESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGV-KFGEAVWFKAGSQIFAEGGLDYLGNP--NLIHAQSILAIWATQVVL 167 The following BLAST results are available for this feature:
BLAST of CX296728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296728 ID=CX296728; Name=CX296728; organism=Citrus clementina; type=EST; length=710bpback to top |