CX296728

Overview
NameCX296728
Unique NameCX296728
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9343 contig Ccv1_Contig9343:36..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.507e-26
Identity = 72/170 (42.35%), Postives = 94/170 (55.29%), Query Frame = 3
Query:  204 PFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710
            PF A KA+  SP   E+  N  +  +K A +        A+   + S WYG +R ++LGP   + PSYLTGE PGDYG+D AGLS DP  F K    E++H RWAMLGALG + PE+L   G     E VW++ G        LDYLG P   L  +Q ++ I  CQ +L
Sbjct:   11 PF-AGKAVKLSPSSSEVTGNGKVTMRKTASK--------AKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPS--LVHAQSILAIWACQVVL 168          
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.275e-26
Identity = 72/170 (42.35%), Postives = 94/170 (55.29%), Query Frame = 3
Query:  204 PFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710
            PF A KA+  SP   E+  N  +  +K A +        A+   + S WYG +R ++LGP   + PSYLTGE PGDYG+D AGLS DP  F K    E++H RWAMLGALG + PE+L   G     E VW++ G        LDYLG P   L  +Q ++ I  CQ +L
Sbjct:   11 PF-AGKAVKLSPSSSEVTGNGKVTMRKTANK--------AKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPS--LVHAQSILAIWACQVVL 168          
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.275e-26
Identity = 73/179 (40.78%), Postives = 96/179 (53.63%), Query Frame = 3
Query:  177 AGVLVFSAIPFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710
            A  +  S+  F A KA+  SP   E+  N  +  +K A +        A+   + S WYG  R ++LGP   + PSYLTGE PGDYG+D AGLS DP  F K    E++H RWAMLGALG + PE+L   G     E VW++ G        LDYLG P   L  +Q ++ I  CQ +L
Sbjct:    3 ASTMALSSSSF-AGKAVKLSPSSSEITGNGKVTMRKTASK--------AKPVSSSSPWYGPNRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKGGSQIFSQGGLDYLGNPS--LVHAQSILAIWACQVVL 169          
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.275e-26
Identity = 60/130 (46.15%), Postives = 75/130 (57.69%), Query Frame = 3
Query:  321 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710
            R      LWYG +R ++LGP     PSYL GE PGDYG+D AGLS DP AF +    E++H RWAMLGALG + PEVL         EPVW++ G        LDYLG P  +L  +Q ++ +   Q LL
Sbjct:   42 RITMGNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNP--NLVHAQSILAVLGFQVLL 169          
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.277e-26
Identity = 60/130 (46.15%), Postives = 78/130 (60.00%), Query Frame = 3
Query:  321 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710
            +  ++ S WYG +R ++LGP   + PSYLTGE PGDYG+D AGLS DP  F K    E++H RWAMLGALG + PE+L   G     E VW++ G        LDYLG P   L  +Q ++ I  CQ +L
Sbjct:   43 KTVQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPS--LVHAQSILAIWACQVIL 169          
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.277e-26
Identity = 72/179 (40.22%), Postives = 96/179 (53.63%), Query Frame = 3
Query:  177 AGVLVFSAIPFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710
            A  +  S+  F A KA+  SP   E+  N  +  +K   +        A+   + S WYG +R ++LGP   + PSYLTGE PGDYG+D AGLS DP  F K    E++H RWAMLGALG + PE+L   G     E VW++ G        LDYLG P   L  +Q ++ I  CQ +L
Sbjct:    3 AATMALSSSSF-AGKAVKLSPSSSEITGNGKVTMRKTVTK--------AKPLSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPS--LVHAQSILAIWACQVVL 169          
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.277e-26
Identity = 70/170 (41.18%), Postives = 91/170 (53.53%), Query Frame = 3
Query:  210 TAVKAIANSPLGELL---QNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710
            TA    ++S  G+ L   Q   L  K    Q     +   R A  ES+WYG +RP++LGP     PSYLTGE PGDYG+D A +S DP  F K    E++H RWAMLGALG + PE+L   G     E VW++ G        LDY G P  +L  +Q ++ I  CQ +L
Sbjct:    3 TASAIQSSSLAGQTLLRPQQNELVKKVGTAQARITMRRTVRSAP-ESIWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNG-LKFGEAVWFKAGAQIFSEGGLDYAGNP--NLIHAQSILAIWACQVVL 168          
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.586e-26
Identity = 61/131 (46.56%), Postives = 78/131 (59.54%), Query Frame = 3
Query:  318 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710
            A+   + S WYG +R ++LGP   + PSYLTGE PGDYG+D AGLS DP  F K    E++H RWAMLGALG + PE+L   G     E VW++ G        LDYLG P   L  +Q ++ I  CQ +L
Sbjct:   42 AKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPS--LVHAQSILAIWACQVVL 169          
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.586e-26
Identity = 61/134 (45.52%), Postives = 80/134 (59.70%), Query Frame = 3
Query:  309 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710
            K + +Q  + S WYG +R ++LGP   + PSYLTGE PGDYG+D AGLS DP  F K    E++H+RWAMLGALG + PE+L   G     E VW++ G        LDYLG P   L  +Q ++ I   Q +L
Sbjct:   35 KTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPS--LIHAQSILAIWATQVIL 165          
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.586e-26
Identity = 61/128 (47.66%), Postives = 78/128 (60.94%), Query Frame = 3
Query:  327 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710
            A + S WYG +R ++LGP   + PSYLTGE PGDYG+D AGLS DP  F K    E++H+RWAMLGALG + PE+L   G     E VW++ G        LDYLG P   L  +Q ++ I  CQ +L
Sbjct:   40 AASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPS--LIHAQSILAIWACQVVL 164          
The following BLAST results are available for this feature:
BLAST of CX296728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB21_TOBAC2.507e-2642.35Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB25_NICPL3.275e-2642.35Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB23_NICPL3.275e-2640.78Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB23_HORVU3.275e-2646.15Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2A_SPIOL4.277e-2646.15Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB25_TOBAC4.277e-2640.22Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB21_PINTH4.277e-2641.18Chlorophyll a-b binding protein type I, chloroplas... [more]
CB27_TOBAC5.586e-2646.56Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB23_SOYBN5.586e-2645.52Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB21_MAIZE5.586e-2647.66Chlorophyll a-b binding protein 1, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionC05802B06SK FerrChloL1 Citrus clementina cDNA clone C05802B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296728 ID=CX296728; Name=CX296728; organism=Citrus clementina; type=EST; length=710bp
CCGAATTCGGCACGAGGCAGGCGCATGCCACGGAGGATTGGCTTTCATGG
AGTTGTTGTTCGAGCTGGAGTGGAGGATGCTCGCTCAGGAAGATTTTAGC
CCTGAAACCTTCACGAAAGAATCTTCTCCTTAAACCCAAGTCTTCTTTAG
TCTGCAAAGCATCGTGGCAAGAGCTTGCGGGAGTGTTAGTATTCTCGGCA
ATACCCTTCACGGCTGTGAAAGCCATCGCAAATAGCCCTCTCGGAGAATT
GCTCCAAAACAGAATGTTGGAGACCAAGAAAGCTGCTCTCCAAGACTCTT
CCAAGTTCAAAGCCTTGGCTCGTCAAGCACGAAATGAAAGCTTGTGGTAT
GGAGAAGAGAGGCCTCGATGGCTTGGTCCCATTCCGTATGACTATCCTTC
ATATCTTACCGGAGAGCTACCTGGGGATTATGGCTTTGATGTTGCTGGTC
TGAGCAAGGATCCTATGGCTTTCCAGAAATACTTCAACTTTGAAATACTT
CATGCTCGTTGGGCCATGCTTGGAGCCCTTGGTGCCCTAGTTCCAGAAGT
TTTAGATATGGTAGGAGCCTTCCACTTGGTTGAGCCTGTCTGGTGGCGTG
TTGGATACTCAAAGCTCCAGGGAGAGACCCTGGACTACCTTGGTATCCCA
GGTCTCCATTTAGCTGGAAGCCAAGGAGTAATTGTCATTGCTATTTGCCA
AGCCCTCCTG
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