CX296728
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 2.507e-26 Identity = 72/170 (42.35%), Postives = 94/170 (55.29%), Query Frame = 3 Query: 204 PFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 PF A KA+ SP E+ N + +K A + A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L +Q ++ I CQ +L Sbjct: 11 PF-AGKAVKLSPSSSEVTGNGKVTMRKTASK--------AKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPS--LVHAQSILAIWACQVVL 168
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.275e-26 Identity = 72/170 (42.35%), Postives = 94/170 (55.29%), Query Frame = 3 Query: 204 PFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 PF A KA+ SP E+ N + +K A + A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L +Q ++ I CQ +L Sbjct: 11 PF-AGKAVKLSPSSSEVTGNGKVTMRKTANK--------AKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPS--LVHAQSILAIWACQVVL 168
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.275e-26 Identity = 73/179 (40.78%), Postives = 96/179 (53.63%), Query Frame = 3 Query: 177 AGVLVFSAIPFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 A + S+ F A KA+ SP E+ N + +K A + A+ + S WYG R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L +Q ++ I CQ +L Sbjct: 3 ASTMALSSSSF-AGKAVKLSPSSSEITGNGKVTMRKTASK--------AKPVSSSSPWYGPNRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKGGSQIFSQGGLDYLGNPS--LVHAQSILAIWACQVVL 169
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.275e-26 Identity = 60/130 (46.15%), Postives = 75/130 (57.69%), Query Frame = 3 Query: 321 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 R LWYG +R ++LGP PSYL GE PGDYG+D AGLS DP AF + E++H RWAMLGALG + PEVL EPVW++ G LDYLG P +L +Q ++ + Q LL Sbjct: 42 RITMGNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNP--NLVHAQSILAVLGFQVLL 169
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 4.277e-26 Identity = 60/130 (46.15%), Postives = 78/130 (60.00%), Query Frame = 3 Query: 321 RQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 + ++ S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L +Q ++ I CQ +L Sbjct: 43 KTVQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPS--LVHAQSILAIWACQVIL 169
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 4.277e-26 Identity = 72/179 (40.22%), Postives = 96/179 (53.63%), Query Frame = 3 Query: 177 AGVLVFSAIPFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 A + S+ F A KA+ SP E+ N + +K + A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L +Q ++ I CQ +L Sbjct: 3 AATMALSSSSF-AGKAVKLSPSSSEITGNGKVTMRKTVTK--------AKPLSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPS--LVHAQSILAIWACQVVL 169
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 4.277e-26 Identity = 70/170 (41.18%), Postives = 91/170 (53.53%), Query Frame = 3 Query: 210 TAVKAIANSPLGELL---QNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 TA ++S G+ L Q L K Q + R A ES+WYG +RP++LGP PSYLTGE PGDYG+D A +S DP F K E++H RWAMLGALG + PE+L G E VW++ G LDY G P +L +Q ++ I CQ +L Sbjct: 3 TASAIQSSSLAGQTLLRPQQNELVKKVGTAQARITMRRTVRSAP-ESIWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNG-LKFGEAVWFKAGAQIFSEGGLDYAGNP--NLIHAQSILAIWACQVVL 168
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 5.586e-26 Identity = 61/131 (46.56%), Postives = 78/131 (59.54%), Query Frame = 3 Query: 318 ARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L +Q ++ I CQ +L Sbjct: 42 AKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPS--LVHAQSILAIWACQVVL 169
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 5.586e-26 Identity = 61/134 (45.52%), Postives = 80/134 (59.70%), Query Frame = 3 Query: 309 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 K + +Q + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L +Q ++ I Q +L Sbjct: 35 KTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPS--LIHAQSILAIWATQVIL 165
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 5.586e-26 Identity = 61/128 (47.66%), Postives = 78/128 (60.94%), Query Frame = 3 Query: 327 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 A + S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L +Q ++ I CQ +L Sbjct: 40 AASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPS--LIHAQSILAIWACQVVL 164 The following BLAST results are available for this feature:
BLAST of CX296728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296728 ID=CX296728; Name=CX296728; organism=Citrus clementina; type=EST; length=710bpback to top |