CX296728

Overview
NameCX296728
Unique NameCX296728
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9343 contig Ccv1_Contig9343:36..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.772e-25
Identity = 70/180 (38.89%), Postives = 94/180 (52.22%), Query Frame = 3
Query:  174 LAGVLVFSAIPFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710
            +A   +  + P  A KA+  SP   E+  N     +K   +        A+   + S WYG +R ++LGP   + PSYLTGE PGDYG+D A LS DP  F K    E++H RWAMLGALG + PE+L   G     E VW++ G        LDYLG P   L  +Q ++ I  CQ +L
Sbjct:    1 MAAATMALSSPSFAGKAVKFSPSSSEITGNGKATMRKTVTK--------AKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPS--LVHAQSILAIWACQVVL 169          
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.176e-25
Identity = 60/124 (48.39%), Postives = 74/124 (59.68%), Query Frame = 3
Query:  339 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710
            S WYG +R  +LGP   + PSYLTGE PGDYG+D AGLS DP  F K    E++H RWAMLGALG + PE+L   G     E VW++ G        LDYLG P   L  +Q ++ I  CQ +L
Sbjct:   56 SPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPS--LVHAQSILAIWACQVIL 176          
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.176e-25
Identity = 72/173 (41.62%), Postives = 92/173 (53.18%), Query Frame = 3
Query:  204 PFTAVKAIANSPLG-ELLQN---RMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710
            P  A KA+  +P   EL  N    M +T KA + DS               WYG +R ++LGP   + PSYLTGE PGDYG+D AGLS DP  F K    E++H+RWAMLGALG + PE+L   G     E VW++ G        LDYLG P   L  +Q ++ I   Q +L
Sbjct:   11 PALAGKAVKVAPSSSELFGNGRVSMRKTVKAPVSDSP--------------WYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPS--LVHAQSILSIWATQVIL 166          
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 8.066e-25
Identity = 62/136 (45.59%), Postives = 80/136 (58.82%), Query Frame = 3
Query:  303 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710
            K  A  + A + S WYG +R  +LGP+  + PSYLTGE PGDYG+D AGLS DP  F K    E++H+RWAMLGALG + PE+L   G     E VW++ G        LDYLG P   L  +Q ++ I   Q +L
Sbjct:   31 KSAAKPKPAASGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPS--LIHAQSILAIWAVQVVL 163          
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.053e-24
Identity = 59/124 (47.58%), Postives = 74/124 (59.68%), Query Frame = 3
Query:  339 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710
            S WYG +R ++LGP   + PSYLTGE PGDYG+D AGLS DP  F K    E++H RWAMLGALG + PE+L   G     E VW++ G        L YLG P   L  +Q ++ I  CQ +L
Sbjct:   46 SPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGV-KFGEAVWFKKGSQIFSEGGLQYLGNPS--LVHAQSILAIWACQVVL 166          
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.376e-24
Identity = 58/124 (46.77%), Postives = 75/124 (60.48%), Query Frame = 3
Query:  339 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710
            S WYG +R ++LGP   + PSYLTGE PGDYG+D AGLS DP  F +    E++H+RWAMLGALG + PE+L   G     E VW++ G        LDYLG P   L  +Q ++ I   Q +L
Sbjct:   48 SPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSDGGLDYLGNPS--LVHAQSILAIWATQVIL 168          
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.376e-24
Identity = 58/124 (46.77%), Postives = 75/124 (60.48%), Query Frame = 3
Query:  339 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710
            S WYG +R ++LGP   + PSYLTGE PGDYG+D AGLS DP  F +    E++H+RWAMLGALG + PE+L   G     E VW++ G        LDYLG P   L  +Q ++ I   Q +L
Sbjct:   48 SPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSDGGLDYLGNPS--LVHAQSILAIWATQVIL 168          
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.347e-24
Identity = 66/154 (42.86%), Postives = 84/154 (54.55%), Query Frame = 3
Query:  282 AALQDSSKFKAL-ARQARNESL---------WYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710
            AAL   S  KAL  RQ R + +         +YG +R ++LGP    D P YLTGE PGDYG+D AGLS DP  F +Y   E++HARWA+LGALG L PE+L         EPVW++ G        L+YLG     L  +Q +I     Q +L
Sbjct:    2 AALIARSGLKALNIRQTRQQRMATVPRAAVEFYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLG--NESLIHAQSIIATLAVQVVL 153          
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.347e-24
Identity = 60/128 (46.88%), Postives = 77/128 (60.16%), Query Frame = 3
Query:  327 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710
            A + S WYG +R  +LGP+  + PSYLTGE PGDYG+D AGLS DP  F K    E++H+RWAMLGALG + PE+L   G     E VW++ G        LDYLG P   L  +Q ++ I   Q +L
Sbjct:   43 ASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPS--LIHAQSILAIWAVQVVL 167          
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.065e-24
Identity = 58/124 (46.77%), Postives = 74/124 (59.68%), Query Frame = 3
Query:  339 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710
            S WYG +R ++LGP   + PSYLTGE PGDYG+D AGLS DP  F +    E++H RWAMLGALG + PE+L   G     E VW++ G        LDYLG P   L  +Q ++ I   Q +L
Sbjct:   47 SPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPS--LVHAQSILAIWATQVIL 167          
The following BLAST results are available for this feature:
BLAST of CX296728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB25_PETSP2.772e-2538.89Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB2B_PINSY6.176e-2548.39Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB23_APIGR6.176e-2541.62Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_ORYSJ8.066e-2545.59Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_HORVU1.053e-2447.58Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_ARATH1.376e-2446.77Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH1.376e-2446.77Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB2_DUNTE2.347e-2442.86Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_ORYSJ2.347e-2446.88Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_SINAL3.065e-2446.77Chlorophyll a-b binding protein 1, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionC05802B06SK FerrChloL1 Citrus clementina cDNA clone C05802B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296728 ID=CX296728; Name=CX296728; organism=Citrus clementina; type=EST; length=710bp
CCGAATTCGGCACGAGGCAGGCGCATGCCACGGAGGATTGGCTTTCATGG
AGTTGTTGTTCGAGCTGGAGTGGAGGATGCTCGCTCAGGAAGATTTTAGC
CCTGAAACCTTCACGAAAGAATCTTCTCCTTAAACCCAAGTCTTCTTTAG
TCTGCAAAGCATCGTGGCAAGAGCTTGCGGGAGTGTTAGTATTCTCGGCA
ATACCCTTCACGGCTGTGAAAGCCATCGCAAATAGCCCTCTCGGAGAATT
GCTCCAAAACAGAATGTTGGAGACCAAGAAAGCTGCTCTCCAAGACTCTT
CCAAGTTCAAAGCCTTGGCTCGTCAAGCACGAAATGAAAGCTTGTGGTAT
GGAGAAGAGAGGCCTCGATGGCTTGGTCCCATTCCGTATGACTATCCTTC
ATATCTTACCGGAGAGCTACCTGGGGATTATGGCTTTGATGTTGCTGGTC
TGAGCAAGGATCCTATGGCTTTCCAGAAATACTTCAACTTTGAAATACTT
CATGCTCGTTGGGCCATGCTTGGAGCCCTTGGTGCCCTAGTTCCAGAAGT
TTTAGATATGGTAGGAGCCTTCCACTTGGTTGAGCCTGTCTGGTGGCGTG
TTGGATACTCAAAGCTCCAGGGAGAGACCCTGGACTACCTTGGTATCCCA
GGTCTCCATTTAGCTGGAAGCCAAGGAGTAATTGTCATTGCTATTTGCCA
AGCCCTCCTG
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