CX296728
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.772e-25 Identity = 70/180 (38.89%), Postives = 94/180 (52.22%), Query Frame = 3 Query: 174 LAGVLVFSAIPFTAVKAIANSPLG-ELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 +A + + P A KA+ SP E+ N +K + A+ + S WYG +R ++LGP + PSYLTGE PGDYG+D A LS DP F K E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L +Q ++ I CQ +L Sbjct: 1 MAAATMALSSPSFAGKAVKFSPSSSEITGNGKATMRKTVTK--------AKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPS--LVHAQSILAIWACQVVL 169
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 6.176e-25 Identity = 60/124 (48.39%), Postives = 74/124 (59.68%), Query Frame = 3 Query: 339 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 S WYG +R +LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L +Q ++ I CQ +L Sbjct: 56 SPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPS--LVHAQSILAIWACQVIL 176
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 6.176e-25 Identity = 72/173 (41.62%), Postives = 92/173 (53.18%), Query Frame = 3 Query: 204 PFTAVKAIANSPLG-ELLQN---RMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 P A KA+ +P EL N M +T KA + DS WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L +Q ++ I Q +L Sbjct: 11 PALAGKAVKVAPSSSELFGNGRVSMRKTVKAPVSDSP--------------WYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPS--LVHAQSILSIWATQVIL 166
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2) HSP 1 Score: 114.005 bits (284), Expect = 8.066e-25 Identity = 62/136 (45.59%), Postives = 80/136 (58.82%), Query Frame = 3 Query: 303 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 K A + A + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L +Q ++ I Q +L Sbjct: 31 KSAAKPKPAASGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPS--LIHAQSILAIWAVQVVL 163
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.053e-24 Identity = 59/124 (47.58%), Postives = 74/124 (59.68%), Query Frame = 3 Query: 339 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F K E++H RWAMLGALG + PE+L G E VW++ G L YLG P L +Q ++ I CQ +L Sbjct: 46 SPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGV-KFGEAVWFKKGSQIFSEGGLQYLGNPS--LVHAQSILAIWACQVVL 166
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.376e-24 Identity = 58/124 (46.77%), Postives = 75/124 (60.48%), Query Frame = 3 Query: 339 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F + E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L +Q ++ I Q +L Sbjct: 48 SPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSDGGLDYLGNPS--LVHAQSILAIWATQVIL 168
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.376e-24 Identity = 58/124 (46.77%), Postives = 75/124 (60.48%), Query Frame = 3 Query: 339 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F + E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L +Q ++ I Q +L Sbjct: 48 SPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSDGGLDYLGNPS--LVHAQSILAIWATQVIL 168
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.347e-24 Identity = 66/154 (42.86%), Postives = 84/154 (54.55%), Query Frame = 3 Query: 282 AALQDSSKFKAL-ARQARNESL---------WYGEERPRWLGPIPY-DYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 AAL S KAL RQ R + + +YG +R ++LGP D P YLTGE PGDYG+D AGLS DP F +Y E++HARWA+LGALG L PE+L EPVW++ G L+YLG L +Q +I Q +L Sbjct: 2 AALIARSGLKALNIRQTRQQRMATVPRAAVEFYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLG--NESLIHAQSIIATLAVQVVL 153
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2) HSP 1 Score: 112.464 bits (280), Expect = 2.347e-24 Identity = 60/128 (46.88%), Postives = 77/128 (60.16%), Query Frame = 3 Query: 327 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 A + S WYG +R +LGP+ + PSYLTGE PGDYG+D AGLS DP F K E++H+RWAMLGALG + PE+L G E VW++ G LDYLG P L +Q ++ I Q +L Sbjct: 43 ASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPS--LIHAQSILAIWAVQVVL 167
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.065e-24 Identity = 58/124 (46.77%), Postives = 74/124 (59.68%), Query Frame = 3 Query: 339 SLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710 S WYG +R ++LGP + PSYLTGE PGDYG+D AGLS DP F + E++H RWAMLGALG + PE+L G E VW++ G LDYLG P L +Q ++ I Q +L Sbjct: 47 SPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPS--LVHAQSILAIWATQVIL 167 The following BLAST results are available for this feature:
BLAST of CX296728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX296728 ID=CX296728; Name=CX296728; organism=Citrus clementina; type=EST; length=710bpback to top |