CX296728

Overview
NameCX296728
Unique NameCX296728
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9343 contig Ccv1_Contig9343:36..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.228e-24
Identity = 58/128 (45.31%), Postives = 76/128 (59.38%), Query Frame = 3
Query:  327 ARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710
            A + S W+G +  ++LGP   + PSYLTGE PGDYG+D AGLS DP  F K    E++H+RWAMLGALG + PE+L   G     E VW++ G        LDYLG P   L  +Q ++ I   Q +L
Sbjct:    6 ASSSSPWHGPDGVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPS--LVHAQSILAIWATQVIL 130          
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.521e-23
Identity = 57/123 (46.34%), Postives = 74/123 (60.16%), Query Frame = 3
Query:  345 WYGEERPRWLGPIPYDY-PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710
            +YG  R +WLGP   +  P+YLTGE PGDYG+D AGLS DP  F++Y   E++HARWAMLGALG   PE+L   G     E VW++ G        LDYLG P   L  +Q ++  +  Q +L
Sbjct:   36 FYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGT-KFGEAVWFKAGAQIFSEGGLDYLGNPS--LVHAQNIVATSAVQVIL 155          
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.987e-23
Identity = 58/134 (43.28%), Postives = 77/134 (57.46%), Query Frame = 3
Query:  309 KALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710
            K  ++   + S WYG +R ++LGP   + PSYLTGE PGDYG+D AGLS DP  F K    E++H+RWAMLGALG + PE+L   G     E  W++ G        LDYLG     L  +Q ++ I   Q +L
Sbjct:   17 KTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEASWFKAGSQIFSEGGLDYLG--NQSLIHAQSILAIWATQVIL 147          
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.142e-21
Identity = 56/136 (41.18%), Postives = 74/136 (54.41%), Query Frame = 3
Query:  303 KFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710
            K  A  + AR+ S WYG +R  +LGP+    PSYLTGE PGDYG+D  GLS DP  F K    E++H RWA+   LG + PE+L   G     E VW++ G        L + G P   L  +Q ++ I  CQ +L
Sbjct:   34 KTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGV-KFGEGVWFKAGSQIFSEGGLSHPGNPS--LVHAQSILAIWACQVVL 166          
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.228e-21
Identity = 53/118 (44.92%), Postives = 70/118 (59.32%), Query Frame = 3
Query:  300 SKFKALARQARNESLWYGEERPRWLGPIPYD---YPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLG 644
            +K KA++  +   + WYG +R  +L     D    P YL GE+ GDYG+D  GL K P  F KY  FE++HARWAMLGA G ++PE L+  GA    E VW++ G   L G TL+Y G
Sbjct:   47 AKSKAVSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFG 164          
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.507e-20
Identity = 52/111 (46.85%), Postives = 65/111 (58.56%), Query Frame = 3
Query:  378 PIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710
            P   + PSYLTGE PGDYG+D AGLS DP  F K    E++H+ WAMLGALG + PE+L   G     E VW++ G        LDYLG P   L  +Q ++ I  CQ +L
Sbjct:    1 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPS--LVHAQSILAIWACQVVL 108          
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.638e-19
Identity = 50/119 (42.02%), Postives = 70/119 (58.82%), Query Frame = 3
Query:  354 EERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710
            + R ++LGP   ++PSYLTGE PGDYG+D AGLS  P  F K    E++H+R AM  ALG + PE+L ++G     E VW++ G        LDYLG P   L  +Q ++ I   + +L
Sbjct:   56 DRRVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQ-GFGEAVWFKAGAQIFSEGGLDYLGNPS--LVHAQSILAIWTTKVIL 171          
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.550e-18
Identity = 58/163 (35.58%), Postives = 80/163 (49.08%), Query Frame = 3
Query:  222 AIANSPLGELLQNRMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710
            A+++S L          T +  +   S  K   +   + S WYG +R ++LGP   + PSYLTGE  G        LS DP  F K    E++H+RWAMLGALG + PE+L   G     E VW++ G        LDYLG P   L  +Q ++ I   Q +L
Sbjct:    7 ALSSSSLAGQAMKLAPSTPELGVGRVSMRKTAPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPS--LIHAQSILAIWATQVIL 158          
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.801e-16
Identity = 53/148 (35.81%), Postives = 81/148 (54.73%), Query Frame = 3
Query:  273 TKKAALQDSSKFKALARQARNESLWYGEERPR-WLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVL-DMVGAFHLVEPVWWRVGYSKLQGETLDYLGIPGLHLAGSQGVIVIAICQALL 710
            TKK A       KA+++ + + + +YG +    W   + + +P   TGE PGDYG+D AGLS DP  F++Y   E++HAR  +LGALG + PE+L D  G       +W++ G +  Q   L+YLG P   L  +Q ++     Q +L
Sbjct:   40 TKKGA-------KAVSKSSSSANQFYGPDATSGW--DLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPS--LIHAQNIVATLAVQVVL 176          
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.152e-13
Identity = 48/145 (33.10%), Postives = 69/145 (47.59%), Query Frame = 3
Query:  195 SAIPFTAVKAIANSPLGELLQNRMLETKKAALQDSSKFKA-------LARQARNESLWYGEERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 605
            SA   + + A+A S         ++ T KA+     + +         AR A    +    +RP W  G  P   P +L G LPGD+GFD  GL+ DP + +     E++H RWAMLGA G  +PE+L  +G   L  P W+  G
Sbjct:    3 SACASSTIAAVAFSSPSSRRNGSIVGTTKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFPGSTP---PPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI--LNTPSWYTAG 142          
The following BLAST results are available for this feature:
BLAST of CX296728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB21_PEA5.228e-2445.31Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB2_CHLRE1.521e-2346.34Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_SOYBN1.987e-2343.28Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB48_MAIZE4.142e-2141.18Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB26_ARATH9.228e-2144.92Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB22_CUCSA3.507e-2046.85Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB2_MALDO8.638e-1942.02Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB22_SOYBN9.550e-1835.58Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2_DUNSA1.801e-1635.81Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB12_SOLLC4.152e-1333.10Chlorophyll a-b binding protein 7, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionC05802B06SK FerrChloL1 Citrus clementina cDNA clone C05802B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296728 ID=CX296728; Name=CX296728; organism=Citrus clementina; type=EST; length=710bp
CCGAATTCGGCACGAGGCAGGCGCATGCCACGGAGGATTGGCTTTCATGG
AGTTGTTGTTCGAGCTGGAGTGGAGGATGCTCGCTCAGGAAGATTTTAGC
CCTGAAACCTTCACGAAAGAATCTTCTCCTTAAACCCAAGTCTTCTTTAG
TCTGCAAAGCATCGTGGCAAGAGCTTGCGGGAGTGTTAGTATTCTCGGCA
ATACCCTTCACGGCTGTGAAAGCCATCGCAAATAGCCCTCTCGGAGAATT
GCTCCAAAACAGAATGTTGGAGACCAAGAAAGCTGCTCTCCAAGACTCTT
CCAAGTTCAAAGCCTTGGCTCGTCAAGCACGAAATGAAAGCTTGTGGTAT
GGAGAAGAGAGGCCTCGATGGCTTGGTCCCATTCCGTATGACTATCCTTC
ATATCTTACCGGAGAGCTACCTGGGGATTATGGCTTTGATGTTGCTGGTC
TGAGCAAGGATCCTATGGCTTTCCAGAAATACTTCAACTTTGAAATACTT
CATGCTCGTTGGGCCATGCTTGGAGCCCTTGGTGCCCTAGTTCCAGAAGT
TTTAGATATGGTAGGAGCCTTCCACTTGGTTGAGCCTGTCTGGTGGCGTG
TTGGATACTCAAAGCTCCAGGGAGAGACCCTGGACTACCTTGGTATCCCA
GGTCTCCATTTAGCTGGAAGCCAAGGAGTAATTGTCATTGCTATTTGCCA
AGCCCTCCTG
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