CX296728

Overview
NameCX296728
Unique NameCX296728
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9343 contig Ccv1_Contig9343:36..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.691e-12
Identity = 37/84 (44.05%), Postives = 48/84 (57.14%), Query Frame = 3
Query:  357 ERPRWL-GPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 605
            +RP W  G  P   P +L G LPGD+GFD  GL  DP + +     E++H+RWAMLGA G  +PE L  +G   L  P W+  G
Sbjct:   64 DRPLWFPGSTP---PEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV--LNTPSWYTAG 142          
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 39/115 (33.91%), Postives = 57/115 (49.57%), Query Frame = 3
Query:  261 RMLETKKAALQDSSKFKALARQARNESLWYGEERPRWLGPIPYDYPSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 605
            R L      L     F ++   A+  S     ++  WL  +    P YLTG L GD GFD  GL++DP   + +   E+++ RWAMLG  G L+PEV   +G  ++  P W+  G
Sbjct:   21 RFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPGLAS--PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINV--PEWYDAG 131          
BLAST of CX296728 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.023e-11
Identity = 32/70 (45.71%), Postives = 44/70 (62.86%), Query Frame = 3
Query:  396 PSYLTGELPGDYGFDVAGLSKDPMAFQKYFNFEILHARWAMLGALGALVPEVLDMVGAFHLVEPVWWRVG 605
            P YLTG LPGD GFD  GL++DP   + +   E+++ RWAMLG  G L+PEV   +G  ++  P W+  G
Sbjct:   63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINV--PKWYAAG 130          
The following BLAST results are available for this feature:
BLAST of CX296728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB12_PETHY2.691e-1244.05Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_ARATH3.515e-1233.91Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB24_PEA1.023e-1145.71Chlorophyll a-b binding protein P4, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC05802B06SK FerrChloL1 Citrus clementina cDNA clone C05802B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296728 ID=CX296728; Name=CX296728; organism=Citrus clementina; type=EST; length=710bp
CCGAATTCGGCACGAGGCAGGCGCATGCCACGGAGGATTGGCTTTCATGG
AGTTGTTGTTCGAGCTGGAGTGGAGGATGCTCGCTCAGGAAGATTTTAGC
CCTGAAACCTTCACGAAAGAATCTTCTCCTTAAACCCAAGTCTTCTTTAG
TCTGCAAAGCATCGTGGCAAGAGCTTGCGGGAGTGTTAGTATTCTCGGCA
ATACCCTTCACGGCTGTGAAAGCCATCGCAAATAGCCCTCTCGGAGAATT
GCTCCAAAACAGAATGTTGGAGACCAAGAAAGCTGCTCTCCAAGACTCTT
CCAAGTTCAAAGCCTTGGCTCGTCAAGCACGAAATGAAAGCTTGTGGTAT
GGAGAAGAGAGGCCTCGATGGCTTGGTCCCATTCCGTATGACTATCCTTC
ATATCTTACCGGAGAGCTACCTGGGGATTATGGCTTTGATGTTGCTGGTC
TGAGCAAGGATCCTATGGCTTTCCAGAAATACTTCAACTTTGAAATACTT
CATGCTCGTTGGGCCATGCTTGGAGCCCTTGGTGCCCTAGTTCCAGAAGT
TTTAGATATGGTAGGAGCCTTCCACTTGGTTGAGCCTGTCTGGTGGCGTG
TTGGATACTCAAAGCTCCAGGGAGAGACCCTGGACTACCTTGGTATCCCA
GGTCTCCATTTAGCTGGAAGCCAAGGAGTAATTGTCATTGCTATTTGCCA
AGCCCTCCTG
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