CX296737

Overview
NameCX296737
Unique NameCX296737
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EF1A_METTP (Elongation factor 1-alpha OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=tuf PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 1.932e-67
Identity = 121/216 (56.02%), Postives = 156/216 (72.22%), Query Frame = 3
Query:    3 YAWVLDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPS 650
            +AWV+D L  ERERG+TIDIA  +F+T KYY TV+D PGHRDF+KNMITG SQAD AVL++ +  G          QT+EH  LA TLGV Q+I   NKMDAT P Y + RY+E+ +EV   L+ VGY  ++VPF+P+S + GDN+++ S    WY GPT+LDAL+ + EP++P + PLR+P+QDVY I G+GTVPVGRVETGVLK G  V F P+
Sbjct:   56 FAWVMDSLKEERERGVTIDIAHQRFDTDKYYFTVVDCPGHRDFVKNMITGASQADAAVLVVAAPDGVM-------AQTKEHVFLARTLGVNQLIVAINKMDATEPPYDEKRYNEVKEEVGKLLRMVGYKIDEVPFIPVSAYNGDNVVKHSDRTKWYTGPTVLDALNALKEPQKPVNLPLRIPVQDVYSISGVGTVPVGRVETGVLKKGDKVIFEPA 264          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EF1A_METS5 (Elongation factor 1-alpha OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=tuf PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 1.932e-67
Identity = 116/217 (53.46%), Postives = 159/217 (73.27%), Query Frame = 3
Query:    3 YAWVLDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSG 653
            YA++LD+L  ERERG+TI++   +FET KY+ T+IDAPGHRDF+KNMITG SQAD A+L + +  G FE+G+S +GQTREH +LA T+G+ Q+I    KMD   P Y + RY+EI + +  ++K  G++  KV F+PI    G+N+ +RS N+ WY GPTL +ALD +  P +P DKPLRLP+Q+VY I G+GTVPVGRVE+GV+K G  + F P+G
Sbjct:   55 YAFLLDRLKEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILAVSARKGEFESGMSLEGQTREHIILAKTMGLNQVIVAITKMDVAEPPYDQKRYNEIKETIEKFMKSFGFDMSKVKFIPIVSITGENVTKRSENMKWYNGPTLEEALDMLEIPPKPVDKPLRLPIQEVYSISGVGTVPVGRVESGVMKVGDKIVFMPAG 271          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EF1A_METMJ (Elongation factor 1-alpha OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=tuf PE=3 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 3.295e-67
Identity = 121/216 (56.02%), Postives = 162/216 (75.00%), Query Frame = 3
Query:    3 YAWVLDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPS 650
            +AWV+D L  ERERGITIDIA  +F+T KYY TV+D PGHRDF+KNMITG SQAD A+L++ +  G  E       QT+EH  L+ TLG+ Q+I   NKMDA   KY + RY+E+ +++S  LK VGY P+ + F+P+S F GDN+ ++S N  WYKGPT+LDAL+ ++EP++P++ P+RLP+QDVY I GIGTVPVGRVETG++K GM V+F P+
Sbjct:   56 FAWVMDSLKEERERGITIDIAHKRFDTDKYYFTVVDCPGHRDFVKNMITGASQADAALLVVAAPDGVME-------QTKEHVFLSRTLGINQLIIGINKMDAA--KYDEKRYNEVKEQLSQLLKMVGYKPDDISFIPMSAFVGDNIAKKSENTPWYKGPTVLDALNALSEPEKPTNLPMRLPIQDVYSISGIGTVPVGRVETGIMKKGMKVSFMPA 262          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EF1A_THEVO (Elongation factor 1-alpha OS=Thermoplasma volcanium GN=tuf PE=3 SV=2)

HSP 1 Score: 253.447 bits (646), Expect = 7.341e-67
Identity = 126/216 (58.33%), Postives = 161/216 (74.54%), Query Frame = 3
Query:    3 YAWVLDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPS 650
            +AWV+D+   ERERG+TID+A  KFET KYY T+IDAPGHRDF+KNMITGTSQAD A+L+I +  G    G+ +  QTREHA LA TLGV Q++   NKMDAT P +S+ R++E+  +    LK +GY  +   FVPISG++GDN+ + S N+ WYKGP+LL ALD    P++P +KPLR+P++DVY I GIGTVPVGRVETGVLKPG  V F P+
Sbjct:   56 FAWVMDRFKEERERGVTIDLAHRKFETDKYYFTLIDAPGHRDFVKNMITGTSQADAAILVISAREG---EGVME--QTREHAFLARTLGVPQIVVAINKMDATEPPFSEKRFNEVKADAEKLLKTIGY--KDATFVPISGYKGDNVTKPSPNMPWYKGPSLLQALDAFKVPEKPINKPLRVPVEDVYSITGIGTVPVGRVETGVLKPGDKVIFLPA 264          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EF1A_PICTO (Elongation factor 1-alpha OS=Picrophilus torridus GN=tuf PE=3 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.635e-66
Identity = 122/216 (56.48%), Postives = 162/216 (75.00%), Query Frame = 3
Query:    3 YAWVLDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPS 650
            +AWV+D+   ERERG+TID+   KFET KYY T+IDAPGHRDF+KNMITGTSQAD AVL++ +  G    G+    QT+EHA LA TLGV Q+I   NKMDAT P YS+ R++E+  E++  L  +G+  + VP +P+SG++GDN+++ S NL W+KGPTL++AL+ +  P +P DKPLRLP++DVY I GIGTVPVGR+ETGV+K G  V F P+
Sbjct:   56 FAWVMDRFKEERERGVTIDLTHRKFETDKYYFTIIDAPGHRDFVKNMITGTSQADAAVLVVSAREG---EGVM--AQTKEHAFLARTLGVPQLIAVVNKMDATQPPYSEKRFNEVKDEITKLLTPIGF--KNVPIIPLSGYKGDNIMKPSPNLSWWKGPTLMEALNALQVPAKPVDKPLRLPVEDVYSITGIGTVPVGRIETGVMKVGDKVIFMPA 264          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EF1A_SULAC (Elongation factor 1-alpha OS=Sulfolobus acidocaldarius GN=tuf PE=3 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 2.136e-66
Identity = 114/217 (52.53%), Postives = 158/217 (72.81%), Query Frame = 3
Query:    3 YAWVLDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSG 653
            YA+++D+L  ERERG+TI+++  +FET KY+ TVIDAPGHRDF+KNMITG SQAD A+L++ +  G +EAG+S +GQTREH +L+ T+G+ Q+I   NKMD     Y + R+ EIV  VS ++K  G++  KV FVP+   +GDN+  +ST + WY GPTL + LD +  P +P DKPLR+P+Q+VY I G+G VPVGR+E+GVLK G  + F P G
Sbjct:   55 YAFLMDRLKEERERGVTINLSFMRFETRKYFFTVIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSAEGQTREHIILSKTMGINQVIVAINKMDLADTPYDEKRFKEIVDTVSKFMKSFGFDMNKVKFVPVVAPDGDNVTHKSTKMPWYNGPTLEELLDQLEIPPKPVDKPLRIPIQEVYSISGVGVVPVGRIESGVLKVGDKIVFMPVG 271          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EF1A_METKA (Elongation factor 1-alpha OS=Methanopyrus kandleri GN=tuf PE=3 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 6.214e-66
Identity = 119/213 (55.87%), Postives = 156/213 (73.24%), Query Frame = 3
Query:   12 VLDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPS 650
            ++D L  ERERG+TID+A  KFET  Y  T++D PGHRDF+KNMITG SQAD A+L++ +  G          QT+EHA LA TLG+ Q+I   NKMD     Y + RY+E+ +EV+  LK +GYN +++PF+PIS FEGDN++E+S N  WY GPTLL+ALDN+  P++P+DKPLR+P+QDVY I G+GTVPVGRVETGVL+ G  V F P+
Sbjct:   49 IMDTLEEERERGVTIDLAHTKFETDNYEFTIVDCPGHRDFVKNMITGASQADAAILVVAADDGVMP-------QTKEHAFLAKTLGIDQLIVAINKMDLVD--YDENRYEEVKQEVAELLKTIGYNVDEIPFIPISAFEGDNVVEKSDNTPWYDGPTLLEALDNLEPPEKPTDKPLRIPIQDVYSITGVGTVPVGRVETGVLEVGDTVRFEPA 252          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EF1A_METHJ (Elongation factor 1-alpha OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=tuf PE=3 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 8.116e-66
Identity = 121/216 (56.02%), Postives = 155/216 (71.76%), Query Frame = 3
Query:    3 YAWVLDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPS 650
            +AWV+D L  ERERGITIDIA  +F+T KYY TV+D PGHRDF+KNMITG SQAD AV+++ +  G  E       QT+EH  L+ TLG+KQ+I   NKMDA    Y +AR++++  +V + LK VG NP+ V F+PIS FEGDN+ + S  + WYKG TL   LD +  P +P++KPLR+P+QD Y I GIGTVPVGRVETG+LK GM VTF P+
Sbjct:   56 FAWVMDNLKEERERGITIDIAHKRFDTDKYYFTVVDCPGHRDFVKNMITGASQADAAVIVVAAPDGVME-------QTKEHVFLSKTLGIKQLIVAVNKMDAAN--YDEARFNQVKSDVGALLKMVGTNPDTVKFIPISAFEGDNITKNSDKMPWYKGKTLFGLLDELEVPDKPTEKPLRVPIQDAYSISGIGTVPVGRVETGILKKGMNVTFMPA 262          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EF1A_METBU (Elongation factor 1-alpha OS=Methanococcoides burtonii (strain DSM 6242) GN=tuf PE=3 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 8.116e-66
Identity = 122/219 (55.71%), Postives = 153/219 (69.86%), Query Frame = 3
Query:    3 YAWVLDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT 659
            +AWV+D L  ERERG+TIDI+  +F+T KYY TV+D PGHRDF+KNMITG SQAD AVL++ +  G          QT+EH  L+ TLG+ Q+I   NKMDA   KYS+ RY+E+ KEVS  L  VG+  + VPF+P S FEGDN+ + S N  WY GP LL+ L+N+  P +P   PLR+P+QD Y I GIGTVPVGRVETG++K G  VTF PSG T
Sbjct:   55 FAWVMDTLKEERERGVTIDISHKRFDTDKYYFTVVDCPGHRDFVKNMITGASQADAAVLVVAAPDGVM-------AQTKEHVFLSRTLGINQLIVAINKMDAA--KYSEDRYNEVKKEVSQLLGMVGFKADDVPFIPTSAFEGDNITKSSANTPWYTGPALLECLNNLTVPSKPDTLPLRIPVQDAYTISGIGTVPVGRVETGIMKKGQKVTFMPSGAT 264          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EF1A_METLZ (Elongation factor 1-alpha OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=tuf PE=3 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 1.808e-65
Identity = 122/219 (55.71%), Postives = 153/219 (69.86%), Query Frame = 3
Query:    3 YAWVLDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT 659
            +AWV+D L  ERERGITIDIA  KFET KY  TV+D PGHRDF+KNMITG SQAD A++++  T G  E       QT+EH  L+ TLG+ Q+I   NKMDA    YS+ +Y+E   +++  +  VG+ P + PF+PIS F GDN+ E S N  WYKGPTLL ALD    P  P+DKPLRLP+QDVY I G+GTVPVGRVETG+LK G  ++F P+ +T
Sbjct:   56 FAWVMDSLKEERERGITIDIAHKKFETPKYNFTVVDCPGHRDFVKNMITGASQADAAIIVVSGTEGPME-------QTKEHVFLSKTLGINQIIVAINKMDAVN--YSEEKYNEAKDKMTKLIMSVGFKPAETPFIPISAFCGDNIKEASANTPWYKGPTLLAALDLFKMPDMPTDKPLRLPIQDVYTISGVGTVPVGRVETGILKKGQKISFMPANVT 265          
The following BLAST results are available for this feature:
BLAST of CX296737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_METTP1.932e-6756.02Elongation factor 1-alpha OS=Methanosaeta thermoph... [more]
EF1A_METS51.932e-6753.46Elongation factor 1-alpha OS=Metallosphaera sedula... [more]
EF1A_METMJ3.295e-6756.02Elongation factor 1-alpha OS=Methanoculleus marisn... [more]
EF1A_THEVO7.341e-6758.33Elongation factor 1-alpha OS=Thermoplasma volcaniu... [more]
EF1A_PICTO1.635e-6656.48Elongation factor 1-alpha OS=Picrophilus torridus ... [more]
EF1A_SULAC2.136e-6652.53Elongation factor 1-alpha OS=Sulfolobus acidocalda... [more]
EF1A_METKA6.214e-6655.87Elongation factor 1-alpha OS=Methanopyrus kandleri... [more]
EF1A_METHJ8.116e-6656.02Elongation factor 1-alpha OS=Methanospirillum hung... [more]
EF1A_METBU8.116e-6655.71Elongation factor 1-alpha OS=Methanococcoides burt... [more]
EF1A_METLZ1.808e-6555.71Elongation factor 1-alpha OS=Methanocorpusculum la... [more]

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Properties
Property NameValue
Genbank descriptionC05802C03SK FerrChloL1 Citrus clementina cDNA clone C05802C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296737 ID=CX296737; Name=CX296737; organism=Citrus clementina; type=EST; length=661bp
AGTACGCCTGGGTGCTCGACAAGCTCACGGCTGAGCGTGAACGTGGTATT
ACCATTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCAC
CGTCATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCG
GTACCTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCCACCACCGGT
GGTTTTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTT
GCTTGCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGA
TGGACGCCACCACCCCCAAGTACTCAAAGGCTAGGTACGATGAAATTGTG
AAGGAGGTCTCTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGT
CCCATTCGTGCCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGT
CTACCAACCTTGACTGGTACAAGGGTCCAACCCTGCTGGACGCTCTTGAC
AATATCAATGAGCCAAAGAGGCCCTCAGACAAGCCCCTTCGTCTGCCACT
CCAGGACGTGTACAAGATTGGTGGCATTGGAACCGTCCCAGTGGGTCGCG
TTGAGACCGGTGTCCTCAAGCCTGGTATGGTGGTGACATTTGGCCCCTCT
GGATTGACAAC
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