CX296737

Overview
NameCX296737
Unique NameCX296737
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EF1A_TETPY (Elongation factor 1-alpha OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 349.362 bits (895), Expect = 9.830e-96
Identity = 167/216 (77.31%), Postives = 185/216 (85.65%), Query Frame = 3
Query:    3 YAWVLDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPS 650
            YAWVLDKL AERERGITIDI+LWKFET KY+ T+IDAPGHRDFIKNMITGTSQAD A+L+I S  G FEAGISKDGQTREHALLAFTLGVKQMI C NKMD  T  +S+ RY EI KE+S YLKKVGY P+ +PF+PISGF GDNM+ERSTN  WYKGP L++ALD +  PKRP DKPLRLPLQDVYKIGGIGTVPVGRVETGV+KPGM + F P+
Sbjct:   57 YAWVLDKLKAERERGITIDISLWKFETAKYHFTIIDAPGHRDFIKNMITGTSQADVAILMIASPQGEFEAGISKDGQTREHALLAFTLGVKQMIVCLNKMDEKTVNFSEERYQEIKKELSDYLKKVGYKPDTIPFIPISGFNGDNMLERSTNAPWYKGPILVEALDALEPPKRPVDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMSIQFAPN 272          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EF1A_ONCVO (Elongation factor 1-alpha OS=Onchocerca volvulus PE=2 SV=1)

HSP 1 Score: 349.362 bits (895), Expect = 9.830e-96
Identity = 168/231 (72.73%), Postives = 192/231 (83.12%), Query Frame = 3
Query:    3 YAWVLDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYK------------GPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT 659
            YAWVLDKL AERERGI IDIALWKFET KYY T+IDAPGHRDFIKNMITGTSQADCAVL++   TG FEAGISK+GQTREHALLA TLGVKQMI  CNKMD+T P +S+AR+ E+  EVS+Y+KK+GYNP+ +PFVPISGF GDNM+E S N+ W+K            G TLL+ALD++  P+RP+DKPLRLPLQDVYKIGGIGTVPVGRVETG+LKPGM+VTF P  LT
Sbjct:   56 YAWVLDKLKAERERGIQIDIALWKFETPKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQMIVACNKMDSTDPPFSEARFGEVTTEVSNYIKKIGYNPKSIPFVPISGFNGDNMLEPSANMPWFKGWSVERKEGTMTGKTLLEALDSVVPPQRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMIVTFAPQNLT 286          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EF1A3_OSCTI (Elongation factor 1-alpha 3 OS=Oscheius tipulae GN=eft-3 PE=3 SV=1)

HSP 1 Score: 349.362 bits (895), Expect = 9.830e-96
Identity = 171/231 (74.03%), Postives = 192/231 (83.12%), Query Frame = 3
Query:    3 YAWVLDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYK------------GPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT 659
            YAWVLDKL AERERGITIDIALWKFET K+Y T+IDAPGHRDFIKNMITGTSQADCAVL++   TG FEAGISK+GQTREHALLA TLGVKQMI  CNKMD+T P +S+ R+DEIV EV S+LKKVGYNP  +PFVPISGF GDNM+E S+N+ WYK            G TL++ALD I  P+RP+D+PLRLPLQDVYKIGGIGTVPVGRVETGV+KPGMVVTF P  +T
Sbjct:   57 YAWVLDKLKAERERGITIDIALWKFETAKFYVTIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQMIVACNKMDSTEPPFSEKRFDEIVTEVKSFLKKVGYNPATIPFVPISGFNGDNMLEPSSNMSWYKGWSVERKEGNASGKTLIEALDCIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPQNVT 287          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EF1A2_RAT (Elongation factor 1-alpha 2 OS=Rattus norvegicus GN=Eef1a2 PE=2 SV=1)

HSP 1 Score: 348.206 bits (892), Expect = 2.190e-95
Identity = 171/231 (74.03%), Postives = 193/231 (83.55%), Query Frame = 3
Query:    3 YAWVLDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYK------------GPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT 659
            YAWVLDKL AERERGITIDI+LWKFETTKYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P YS+ RYDEIVKEVS+Y+KK+GYNP  VPFVPISG+ GDNM+E S N+ W+K            G +LL+ALD I  P RP+DKPLRLPLQDVYKIGGIGTVPVGRVETG+L+PGMVVTF P  +T
Sbjct:   56 YAWVLDKLKAERERGITIDISLWKFETTKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPAYSEKRYDEIVKEVSAYIKKIGYNPATVPFVPISGWHGDNMLEPSPNMPWFKGWKVERKEGNASGVSLLEALDTILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGILRPGMVVTFAPVNIT 286          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EF1A2_RABIT (Elongation factor 1-alpha 2 OS=Oryctolagus cuniculus GN=EEF1A2 PE=1 SV=1)

HSP 1 Score: 348.206 bits (892), Expect = 2.190e-95
Identity = 171/231 (74.03%), Postives = 193/231 (83.55%), Query Frame = 3
Query:    3 YAWVLDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYK------------GPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT 659
            YAWVLDKL AERERGITIDI+LWKFETTKYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P YS+ RYDEIVKEVS+Y+KK+GYNP  VPFVPISG+ GDNM+E S N+ W+K            G +LL+ALD I  P RP+DKPLRLPLQDVYKIGGIGTVPVGRVETG+L+PGMVVTF P  +T
Sbjct:   56 YAWVLDKLKAERERGITIDISLWKFETTKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPAYSEKRYDEIVKEVSAYIKKIGYNPATVPFVPISGWHGDNMLEPSPNMPWFKGWKVERKEGNASGVSLLEALDTILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGILRPGMVVTFAPVNIT 286          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EF1A2_MOUSE (Elongation factor 1-alpha 2 OS=Mus musculus GN=Eef1a2 PE=1 SV=1)

HSP 1 Score: 348.206 bits (892), Expect = 2.190e-95
Identity = 171/231 (74.03%), Postives = 193/231 (83.55%), Query Frame = 3
Query:    3 YAWVLDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYK------------GPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT 659
            YAWVLDKL AERERGITIDI+LWKFETTKYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P YS+ RYDEIVKEVS+Y+KK+GYNP  VPFVPISG+ GDNM+E S N+ W+K            G +LL+ALD I  P RP+DKPLRLPLQDVYKIGGIGTVPVGRVETG+L+PGMVVTF P  +T
Sbjct:   56 YAWVLDKLKAERERGITIDISLWKFETTKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPAYSEKRYDEIVKEVSAYIKKIGYNPATVPFVPISGWHGDNMLEPSPNMPWFKGWKVERKEGNASGVSLLEALDTILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGILRPGMVVTFAPVNIT 286          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EF1A2_HUMAN (Elongation factor 1-alpha 2 OS=Homo sapiens GN=EEF1A2 PE=1 SV=1)

HSP 1 Score: 348.206 bits (892), Expect = 2.190e-95
Identity = 171/231 (74.03%), Postives = 193/231 (83.55%), Query Frame = 3
Query:    3 YAWVLDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYK------------GPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT 659
            YAWVLDKL AERERGITIDI+LWKFETTKYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P YS+ RYDEIVKEVS+Y+KK+GYNP  VPFVPISG+ GDNM+E S N+ W+K            G +LL+ALD I  P RP+DKPLRLPLQDVYKIGGIGTVPVGRVETG+L+PGMVVTF P  +T
Sbjct:   56 YAWVLDKLKAERERGITIDISLWKFETTKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPAYSEKRYDEIVKEVSAYIKKIGYNPATVPFVPISGWHGDNMLEPSPNMPWFKGWKVERKEGNASGVSLLEALDTILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGILRPGMVVTFAPVNIT 286          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EF1A2_BOVIN (Elongation factor 1-alpha 2 OS=Bos taurus GN=EEF1A2 PE=2 SV=1)

HSP 1 Score: 348.206 bits (892), Expect = 2.190e-95
Identity = 171/231 (74.03%), Postives = 193/231 (83.55%), Query Frame = 3
Query:    3 YAWVLDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYK------------GPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT 659
            YAWVLDKL AERERGITIDI+LWKFETTKYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P YS+ RYDEIVKEVS+Y+KK+GYNP  VPFVPISG+ GDNM+E S N+ W+K            G +LL+ALD I  P RP+DKPLRLPLQDVYKIGGIGTVPVGRVETG+L+PGMVVTF P  +T
Sbjct:   56 YAWVLDKLKAERERGITIDISLWKFETTKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPAYSEKRYDEIVKEVSAYIKKIGYNPATVPFVPISGWHGDNMLEPSPNMPWFKGWKVERKEGNASGVSLLEALDTILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGILRPGMVVTFAPVNIT 286          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EF1A_SORMA (Elongation factor 1-alpha OS=Sordaria macrospora GN=TEF PE=3 SV=1)

HSP 1 Score: 347.821 bits (891), Expect = 2.860e-95
Identity = 173/231 (74.89%), Postives = 193/231 (83.55%), Query Frame = 3
Query:    3 YAWVLDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYK------------GPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT 659
            YAWVLDKL AERERGITIDIALWKFET KYY TVIDAPGHRDFIKNMITGTSQADCA+LII + TG FEAGISKDGQTREHALLA+TLGVKQ+I   NKMD T  ++S+AR++EI+KE  +++KKVGYNP  V FVPISGF GDNM+E STN  WYK            G TLL+A+D I +PKRP+DKPLRLPLQDVYKIGGIGTVPVGR+ETGVLKPGMVVTF PS +T
Sbjct:   57 YAWVLDKLKAERERGITIDIALWKFETPKYYVTVIDAPGHRDFIKNMITGTSQADCAILIIAAGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAINKMDTT--QWSQARFEEIIKETKNFIKKVGYNPATVAFVPISGFNGDNMLEASTNCPWYKGWEKETKAGKSTGKTLLEAIDAIEQPKRPTDKPLRLPLQDVYKIGGIGTVPVGRIETGVLKPGMVVTFAPSNVT 285          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EF1A_COCIM (Elongation factor 1-alpha OS=Coccidioides immitis GN=TEF PE=2 SV=2)

HSP 1 Score: 347.436 bits (890), Expect = 3.735e-95
Identity = 175/231 (75.76%), Postives = 195/231 (84.42%), Query Frame = 3
Query:    3 YAWVLDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYK------------GPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT 659
            YAWVLDKL AERERGITIDIALWKFET KY+ TVIDAPGHRDFIKNMITGTSQADCA+LII + TG FEAGISKDGQTREHALLAFTLGVKQ+I   NKMD+T   +S+ R++EIVKEVS+++KKVGYNP+ VPFVPISGFEGDNMI+ STN  WYK            G TLLDA+D I+ P RP++KPLRLPLQDVYKI GIGTVPVGRVETGV+KPGMVVTF PS +T
Sbjct:   57 YAWVLDKLKAERERGITIDIALWKFETPKYHVTVIDAPGHRDFIKNMITGTSQADCAILIIAAGTGEFEAGISKDGQTREHALLAFTLGVKQLIVAINKMDST--NWSEPRFNEIVKEVSNFIKKVGYNPKAVPFVPISGFEGDNMIQPSTNAPWYKGWNKETASGKHSGKTLLDAIDAIDPPTRPTEKPLRLPLQDVYKISGIGTVPVGRVETGVIKPGMVVTFAPSNVT 285          
The following BLAST results are available for this feature:
BLAST of CX296737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_TETPY9.830e-9677.31Elongation factor 1-alpha OS=Tetrahymena pyriformi... [more]
EF1A_ONCVO9.830e-9672.73Elongation factor 1-alpha OS=Onchocerca volvulus P... [more]
EF1A3_OSCTI9.830e-9674.03Elongation factor 1-alpha 3 OS=Oscheius tipulae GN... [more]
EF1A2_RAT2.190e-9574.03Elongation factor 1-alpha 2 OS=Rattus norvegicus G... [more]
EF1A2_RABIT2.190e-9574.03Elongation factor 1-alpha 2 OS=Oryctolagus cunicul... [more]
EF1A2_MOUSE2.190e-9574.03Elongation factor 1-alpha 2 OS=Mus musculus GN=Eef... [more]
EF1A2_HUMAN2.190e-9574.03Elongation factor 1-alpha 2 OS=Homo sapiens GN=EEF... [more]
EF1A2_BOVIN2.190e-9574.03Elongation factor 1-alpha 2 OS=Bos taurus GN=EEF1A... [more]
EF1A_SORMA2.860e-9574.89Elongation factor 1-alpha OS=Sordaria macrospora G... [more]
EF1A_COCIM3.735e-9575.76Elongation factor 1-alpha OS=Coccidioides immitis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05802C03SK FerrChloL1 Citrus clementina cDNA clone C05802C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296737 ID=CX296737; Name=CX296737; organism=Citrus clementina; type=EST; length=661bp
AGTACGCCTGGGTGCTCGACAAGCTCACGGCTGAGCGTGAACGTGGTATT
ACCATTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCAC
CGTCATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCG
GTACCTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCCACCACCGGT
GGTTTTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTT
GCTTGCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGA
TGGACGCCACCACCCCCAAGTACTCAAAGGCTAGGTACGATGAAATTGTG
AAGGAGGTCTCTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGT
CCCATTCGTGCCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGT
CTACCAACCTTGACTGGTACAAGGGTCCAACCCTGCTGGACGCTCTTGAC
AATATCAATGAGCCAAAGAGGCCCTCAGACAAGCCCCTTCGTCTGCCACT
CCAGGACGTGTACAAGATTGGTGGCATTGGAACCGTCCCAGTGGGTCGCG
TTGAGACCGGTGTCCTCAAGCCTGGTATGGTGGTGACATTTGGCCCCTCT
GGATTGACAAC
back to top