CX296737

Overview
NameCX296737
Unique NameCX296737
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig789 contig Ccv1_Contig789:376..1036. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU_NOCFA (Elongation factor Tu OS=Nocardia farcinica GN=tuf PE=3 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 5.686e-27
Identity = 79/206 (38.35%), Postives = 115/206 (55.83%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISG---FEGDNMIERSTNLDWYKG-PTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 617
            +DK   E+ RGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L    ++ E+ P V +SG    EGD          W K    L+DA+D +I +P R +DKP  +P++DV+ I G GTV  GRVE G++
Sbjct:   52 IDKAPEEKARGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADMVD---DEEILELVEMEVRELLAAQEFD-EEAPVVRVSGLKALEGDP--------KWVKSVEDLMDAVDESIPDPVRETDKPFLMPIEDVFTITGRGTVVTGRVERGII 238          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU_MOOTA (Elongation factor Tu OS=Moorella thermoacetica (strain ATCC 39073) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.686e-27
Identity = 76/206 (36.89%), Postives = 111/206 (53.88%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWY-KGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 626
            +DK   ERERGITI  A  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D           + +  EV   L +  +  +++P V  S  +           +W  K   L+DA+D+ I  P+R +DKP  +P++DV+ I G GTV  GRVE G +K G
Sbjct:   50 IDKAPEERERGITIATAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKVDQVD---DPELLELVEMEVRELLTEYEFPGDEIPIVTGSALKAMECGCGKRECEWCGKVWELMDAVDSYIPTPERDTDKPFLMPIEDVFTITGRGTVTTGRVERGKVKVG 245          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU_FRAAA (Elongation factor Tu OS=Frankia alni (strain ACN14a) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.686e-27
Identity = 76/209 (36.36%), Postives = 112/209 (53.59%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKGPTLLDAL----DNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLK 620
            +DK   E+ RGITI IA  +++T K +   +D PGH D+IKNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK D       +   + +  EV   L    +  + VP + +S     EGD         +W  G  LL+ +    D+I EP+R  D+P  +P++DV+ I G GTV  GRVE G++K
Sbjct:   52 IDKAPEEKARGITISIAHVEYQTDKRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMP-------QTKEHVLLARQVGVPYIVVALNKADMVD---DEEILELVELEVRELLSSYEFPGDDVPVIRVSALKALEGDK--------EW--GAKLLELMAAVDDSIPEPQRDIDRPFLMPIEDVFTITGRGTVVTGRVERGIVK 240          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU_ERYLH (Elongation factor Tu OS=Erythrobacter litoralis (strain HTCC2594) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.686e-27
Identity = 74/208 (35.58%), Postives = 114/208 (54.81%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 626
            +DK   ERERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++++  G          QTREH LL+  +GV  ++   NK+D       +   + +  EV   L +  ++ + +P V    ++  EG     R  N+       L+ A+D +I +P+RP D+   +P++DV+ I G GTV  GRVETGV+  G
Sbjct:   50 IDKAPEERERGITISTAHVEYETDARHYAHVDCPGHADYVKNMITGAAQMDGAILVVNAADGPMP-------QTREHILLSRQVGVPALVVYLNKVDQVD---DEELLELVELEVRELLSEYDFDGDNIPIVKGSALAALEG-----RDDNIGKESIVELMKAVDEHIPQPERPVDQDFLMPIEDVFSISGRGTVVTGRVETGVVNVG 242          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU_DESDG (Elongation factor Tu OS=Desulfovibrio desulfuricans (strain G20) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.686e-27
Identity = 78/207 (37.68%), Postives = 112/207 (54.11%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGP--TLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 626
            +DK   E+ERGITI  A  ++ETT  +   +D PGH D+IKNMITG +Q D A++++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L    +  +  P +  S  +    +E  +  D    P   LLDA D+ I EP+R +DKP  +P++DV+ I G GTV  GRVE G++K G
Sbjct:   50 IDKAPEEKERGITIATAHVEYETTLRHYAHVDCPGHADYIKNMITGAAQMDGAIIVVAATDGPMP-------QTREHILLARQVGVPSIVVFLNKCDMVD---DEELLELVELEVRELLSSYDFPGDDTPVIRGSALKA---LECDSADDDAAKPILELLDACDSYIPEPERDTDKPFLMPIEDVFSISGRGTVVTGRVERGIIKVG 243          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU_CORJK (Elongation factor Tu OS=Corynebacterium jeikeium (strain K411) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.686e-27
Identity = 77/202 (38.12%), Postives = 115/202 (56.93%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 617
            +DK   E+ERGITI+I+  ++ET K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L +  ++ E+ P V IS  +     E+  N    +   L+ A D +I +P+R +DKP  +P++D++ I G GTV  GRVE G+L
Sbjct:   52 IDKAPEEKERGITINISHVEYETEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKCDMVD---DEELLELVEMEVRELLAEQDFD-EEAPVVHISALKALEGDEKWAN----QILELMQACDESIPDPERETDKPFLMPVEDIFTITGRGTVVTGRVERGIL 238          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU_BORRA (Elongation factor Tu OS=Borrelia recurrentis (strain A1) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.686e-27
Identity = 75/208 (36.06%), Postives = 113/208 (54.33%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVV 635
            +D    E+ RGITI+    ++ET   +   +D PGH D+IKNMITG +Q D A+L++ + +G        + QT+EH LLA  +G+K++I   NK+D   P+      + +  EV   ++K G+ P   P V  S F   +  +        K   LL+ +DN  + P+R  DKP  L ++DV+ I G GTV  GR+E GV+K G  V
Sbjct:   51 IDNAPEEKARGITINARHIEYETANRHYAHVDCPGHADYIKNMITGAAQMDAAILLVAADSGA-------EPQTKEHLLLAQRMGIKKIIVFLNKLDLADPEL----VELVEVEVLELVEKYGF-PSDTPIVKGSAFGAMSNPDDPEATKCIK--ELLETMDNYFDLPERDIDKPFLLAIEDVFSISGRGTVATGRIERGVIKVGQEV 244          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU_BORDL (Elongation factor Tu OS=Borrelia duttonii (strain Ly) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.686e-27
Identity = 75/208 (36.06%), Postives = 113/208 (54.33%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVV 635
            +D    E+ RGITI+    ++ET   +   +D PGH D+IKNMITG +Q D A+L++ + +G        + QT+EH LLA  +G+K++I   NK+D   P+      + +  EV   ++K G+ P   P V  S F   +  +        K   LL+ +DN  + P+R  DKP  L ++DV+ I G GTV  GR+E GV+K G  V
Sbjct:   51 IDNAPEEKARGITINARHIEYETANRHYAHVDCPGHADYIKNMITGAAQMDAAILLVAADSGA-------EPQTKEHLLLAQRMGIKKIIVFLNKLDLADPEL----VELVEVEVLELVEKYGF-PSDTPIVKGSAFGAMSNPDDPEATKCIK--ELLETMDNYFDLPERDIDKPFLLAIEDVFSISGRGTVATGRIERGVIKVGQEV 244          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU_BORBZ (Elongation factor Tu OS=Borrelia burgdorferi (strain ZS7) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.686e-27
Identity = 73/208 (35.10%), Postives = 116/208 (55.77%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVV 635
            +D    E+ RGITI+    ++ET   +   +D PGH D+IKNMITG +Q D A+L++ + +G        + QT+EH LLA  +G+K++I   NK+D   P+      + +  EV   ++K G++ +  P +  S F   +  E   +    K   LL+++DN  + P+R  DKP  L ++DV+ I G GTV  GR+E G++K G  V
Sbjct:   51 IDNAPEEKARGITINARHIEYETANRHYAHVDCPGHADYIKNMITGAAQMDAAILLVAADSGA-------EPQTKEHLLLAQRMGIKKIIVFLNKLDLADPEL----VELVEVEVLELVEKYGFSAD-TPIIKGSAFGAMSNPEDPESTKCVK--ELLESMDNYFDLPERDIDKPFLLAVEDVFSISGRGTVATGRIERGIIKVGQEV 244          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU_BORBU (Elongation factor Tu OS=Borrelia burgdorferi GN=tuf PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.686e-27
Identity = 73/208 (35.10%), Postives = 116/208 (55.77%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVV 635
            +D    E+ RGITI+    ++ET   +   +D PGH D+IKNMITG +Q D A+L++ + +G        + QT+EH LLA  +G+K++I   NK+D   P+      + +  EV   ++K G++ +  P +  S F   +  E   +    K   LL+++DN  + P+R  DKP  L ++DV+ I G GTV  GR+E G++K G  V
Sbjct:   51 IDNAPEEKARGITINARHIEYETANRHYAHVDCPGHADYIKNMITGAAQMDAAILLVAADSGA-------EPQTKEHLLLAQRMGIKKIIVFLNKLDLADPEL----VELVEVEVLELVEKYGFSAD-TPIIKGSAFGAMSNPEDPESTKCVK--ELLESMDNYFDLPERDIDKPFLLAVEDVFSISGRGTVATGRIERGIIKVGQEV 244          
The following BLAST results are available for this feature:
BLAST of CX296737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_NOCFA5.686e-2738.35Elongation factor Tu OS=Nocardia farcinica GN=tuf ... [more]
EFTU_MOOTA5.686e-2736.89Elongation factor Tu OS=Moorella thermoacetica (st... [more]
EFTU_FRAAA5.686e-2736.36Elongation factor Tu OS=Frankia alni (strain ACN14... [more]
EFTU_ERYLH5.686e-2735.58Elongation factor Tu OS=Erythrobacter litoralis (s... [more]
EFTU_DESDG5.686e-2737.68Elongation factor Tu OS=Desulfovibrio desulfurican... [more]
EFTU_CORJK5.686e-2738.12Elongation factor Tu OS=Corynebacterium jeikeium (... [more]
EFTU_BORRA5.686e-2736.06Elongation factor Tu OS=Borrelia recurrentis (stra... [more]
EFTU_BORDL5.686e-2736.06Elongation factor Tu OS=Borrelia duttonii (strain ... [more]
EFTU_BORBZ5.686e-2735.10Elongation factor Tu OS=Borrelia burgdorferi (stra... [more]
EFTU_BORBU5.686e-2735.10Elongation factor Tu OS=Borrelia burgdorferi GN=tu... [more]

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Properties
Property NameValue
Genbank descriptionC05802C03SK FerrChloL1 Citrus clementina cDNA clone C05802C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296737 ID=CX296737; Name=CX296737; organism=Citrus clementina; type=EST; length=661bp
AGTACGCCTGGGTGCTCGACAAGCTCACGGCTGAGCGTGAACGTGGTATT
ACCATTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCAC
CGTCATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCG
GTACCTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCCACCACCGGT
GGTTTTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTT
GCTTGCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGA
TGGACGCCACCACCCCCAAGTACTCAAAGGCTAGGTACGATGAAATTGTG
AAGGAGGTCTCTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGT
CCCATTCGTGCCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGT
CTACCAACCTTGACTGGTACAAGGGTCCAACCCTGCTGGACGCTCTTGAC
AATATCAATGAGCCAAAGAGGCCCTCAGACAAGCCCCTTCGTCTGCCACT
CCAGGACGTGTACAAGATTGGTGGCATTGGAACCGTCCCAGTGGGTCGCG
TTGAGACCGGTGTCCTCAAGCCTGGTATGGTGGTGACATTTGGCCCCTCT
GGATTGACAAC
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