CX296737

Overview
NameCX296737
Unique NameCX296737
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig789 contig Ccv1_Contig789:376..1036. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU_PEDPA (Elongation factor Tu OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.426e-27
Identity = 76/211 (36.02%), Postives = 112/211 (53.08%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDNINE----PKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 626
            +D    E+ERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D           D +  EV   L +  +  + VP +    +   EGD   E+           ++D +D I+E    P+R +DKP  +P++DV+ I G GTV  GR++ G +K G
Sbjct:   50 IDAAPEEKERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLAHQVGVDYIVVFLNKTDLVD---DDELVDLVEMEVRELLSEYDFPGDDVPVLRGSALKALEGDAEQEK----------VIMDLMDTIDEYIPTPERSTDKPFLMPVEDVFTITGRGTVASGRIDRGEIKVG 240          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU_CHLPD (Elongation factor Tu OS=Chlorobium phaeobacteroides (strain DSM 266) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.426e-27
Identity = 76/206 (36.89%), Postives = 110/206 (53.40%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLK 620
            +DK   ERERGITI  A  +++T K +   ID PGH D+IKNMITG +Q D A+L++  T G          QTREH LLA  + V  ++   NK+D   P+      + +  E+   L +  +  + +P +    +   +GD   E+S          L+DA+D  I EP R  DKP  +P++DV+ I G GTV  GR+E G +K
Sbjct:   50 IDKAPEERERGITISTAHVEYQTKKRHYAHIDCPGHADYIKNMITGAAQMDGAILVVAGTDGPMP-------QTREHILLARQVNVPALVVYLNKVDIADPEL----IELVELELRELLTEYNFPGDDIPIIKGSALKALDGDLEGEKSI-------MELMDAVDEFIPEPLRDIDKPFLMPVEDVFSISGRGTVGTGRIERGRIK 237          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU_BRUSU (Elongation factor Tu OS=Brucella suis GN=tufA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.426e-27
Identity = 76/206 (36.89%), Postives = 112/206 (54.37%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 626
            +D    ER RGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D    +   A   E+V+ EV   L K  +  +++P +  S      + + S  L       L+DA+D+ I  P+RP D+P  +P++DV+ I G GTV  GRVE G++K G
Sbjct:   45 IDAAPEERARGITISTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPAIVVFLNKCD----QVDDAELLELVELEVRELLSKYEFPGDEIPIIKGSALAA--LEDSSKELGEDAIRNLMDAVDSYIPTPERPIDQPFLMPIEDVFSISGRGTVVTGRVERGIVKVG 237          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU_BRUSI (Elongation factor Tu OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.426e-27
Identity = 76/206 (36.89%), Postives = 112/206 (54.37%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 626
            +D    ER RGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D    +   A   E+V+ EV   L K  +  +++P +  S      + + S  L       L+DA+D+ I  P+RP D+P  +P++DV+ I G GTV  GRVE G++K G
Sbjct:   45 IDAAPEERARGITISTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPAIVVFLNKCD----QVDDAELLELVELEVRELLSKYEFPGDEIPIIKGSAIAA--LEDSSKELGEDAIRNLMDAVDSYIPTPERPIDQPFLMPIEDVFSISGRGTVVTGRVERGIVKVG 237          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU_BRUO2 (Elongation factor Tu OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.426e-27
Identity = 76/206 (36.89%), Postives = 112/206 (54.37%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 626
            +D    ER RGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D    +   A   E+V+ EV   L K  +  +++P +  S      + + S  L       L+DA+D+ I  P+RP D+P  +P++DV+ I G GTV  GRVE G++K G
Sbjct:   45 IDAAPEERARGITISTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPAIVVFLNKCD----QVDDAELLELVELEVRELLSKYEFPGDEIPIIKGSALAA--LEDSSKELGEDAIRNLMDAVDSYIPTPERPIDQPFLMPIEDVFSISGRGTVVTGRVERGIVKVG 237          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU_BRUME (Elongation factor Tu OS=Brucella melitensis GN=tufA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.426e-27
Identity = 76/206 (36.89%), Postives = 112/206 (54.37%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 626
            +D    ER RGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D    +   A   E+V+ EV   L K  +  +++P +  S      + + S  L       L+DA+D+ I  P+RP D+P  +P++DV+ I G GTV  GRVE G++K G
Sbjct:   45 IDAAPEERARGITISTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPAIVVFLNKCD----QVDDAELLELVELEVRELLSKYEFPGDEIPIIKGSALAA--LEDSSKELGEDAIRNLMDAVDSYIPTPERPIDQPFLMPIEDVFSISGRGTVVTGRVERGIVKVG 237          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU_BRUC2 (Elongation factor Tu OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.426e-27
Identity = 76/206 (36.89%), Postives = 112/206 (54.37%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 626
            +D    ER RGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D    +   A   E+V+ EV   L K  +  +++P +  S      + + S  L       L+DA+D+ I  P+RP D+P  +P++DV+ I G GTV  GRVE G++K G
Sbjct:   45 IDAAPEERARGITISTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPAIVVFLNKCD----QVDDAELLELVELEVRELLSKYEFPGDEIPIIKGSALAA--LEDSSKELGEDAIRNLMDAVDSYIPTPERPIDQPFLMPIEDVFSISGRGTVVTGRVERGIVKVG 237          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU_BRUA2 (Elongation factor Tu OS=Brucella abortus (strain 2308) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.426e-27
Identity = 76/206 (36.89%), Postives = 112/206 (54.37%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 626
            +D    ER RGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D    +   A   E+V+ EV   L K  +  +++P +  S      + + S  L       L+DA+D+ I  P+RP D+P  +P++DV+ I G GTV  GRVE G++K G
Sbjct:   45 IDAAPEERARGITISTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPAIVVFLNKCD----QVDDAELLELVELEVRELLSKYEFPGDEIPIIKGSALAA--LEDSSKELGEDAIRNLMDAVDSYIPTPERPIDQPFLMPIEDVFSISGRGTVVTGRVERGIVKVG 237          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU_BORGA (Elongation factor Tu OS=Borrelia garinii GN=tuf PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.426e-27
Identity = 74/208 (35.58%), Postives = 115/208 (55.29%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVV 635
            +D    E+ RGITI+    ++ET   +   +D PGH D+IKNMITG +Q D A+L++ + +G        + QT+EH LLA  +G+K++I   NK+D   P+      + +  EV   ++K G++    P +  S F   +  E   +    K   LL+++DN  + P+R  DKP  L ++DV+ I G GTV  GR+E GV+K G  V
Sbjct:   51 IDNAPEEKARGITINARHIEYETANRHYAHVDCPGHADYIKNMITGAAQMDAAILLVAADSGA-------EPQTKEHLLLAQRMGIKKIIVFLNKLDLADPEL----VELVEVEVLELVEKYGFS-ANTPIIKGSAFGAMSNPEDPESTKCVK--ELLESMDNYFDLPERDIDKPFLLAVEDVFSISGRGTVATGRIERGVIKVGQEV 244          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU_ACIC1 (Elongation factor Tu OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.426e-27
Identity = 84/212 (39.62%), Postives = 113/212 (53.30%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK----EVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 626
            +DK   ER RGITI IA  +++T K +   +D PGH D+IKNMITG +Q D A+L++ +  G          QT+EH LLA  +GV  ++   NK D           +EI++    EV   L    +  + VP V +S     EGD    +S  LD      LL A D+ I EP R  DKP  +P++DV+ I G GTV  GRVE GV+K G
Sbjct:   52 IDKAPEERARGITISIAHVEYQTEKRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-------QTKEHVLLARQVGVPYIVVALNKADVVDD-------EEILQLVELEVRELLNSYEFPGDDVPVVRVSALKALEGDPKWTQSI-LD------LLKACDDYIPEPVREIDKPFLMPIEDVFTITGRGTVVTGRVERGVVKVG 242          
The following BLAST results are available for this feature:
BLAST of CX296737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_PEDPA7.426e-2736.02Elongation factor Tu OS=Pediococcus pentosaceus (s... [more]
EFTU_CHLPD7.426e-2736.89Elongation factor Tu OS=Chlorobium phaeobacteroide... [more]
EFTU_BRUSU7.426e-2736.89Elongation factor Tu OS=Brucella suis GN=tufA PE=3... [more]
EFTU_BRUSI7.426e-2736.89Elongation factor Tu OS=Brucella suis (strain ATCC... [more]
EFTU_BRUO27.426e-2736.89Elongation factor Tu OS=Brucella ovis (strain ATCC... [more]
EFTU_BRUME7.426e-2736.89Elongation factor Tu OS=Brucella melitensis GN=tuf... [more]
EFTU_BRUC27.426e-2736.89Elongation factor Tu OS=Brucella canis (strain ATC... [more]
EFTU_BRUA27.426e-2736.89Elongation factor Tu OS=Brucella abortus (strain 2... [more]
EFTU_BORGA7.426e-2735.58Elongation factor Tu OS=Borrelia garinii GN=tuf PE... [more]
EFTU_ACIC17.426e-2739.62Elongation factor Tu OS=Acidothermus cellulolyticu... [more]

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Properties
Property NameValue
Genbank descriptionC05802C03SK FerrChloL1 Citrus clementina cDNA clone C05802C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296737 ID=CX296737; Name=CX296737; organism=Citrus clementina; type=EST; length=661bp
AGTACGCCTGGGTGCTCGACAAGCTCACGGCTGAGCGTGAACGTGGTATT
ACCATTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCAC
CGTCATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCG
GTACCTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCCACCACCGGT
GGTTTTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTT
GCTTGCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGA
TGGACGCCACCACCCCCAAGTACTCAAAGGCTAGGTACGATGAAATTGTG
AAGGAGGTCTCTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGT
CCCATTCGTGCCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGT
CTACCAACCTTGACTGGTACAAGGGTCCAACCCTGCTGGACGCTCTTGAC
AATATCAATGAGCCAAAGAGGCCCTCAGACAAGCCCCTTCGTCTGCCACT
CCAGGACGTGTACAAGATTGGTGGCATTGGAACCGTCCCAGTGGGTCGCG
TTGAGACCGGTGTCCTCAAGCCTGGTATGGTGGTGACATTTGGCCCCTCT
GGATTGACAAC
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