CX296737

Overview
NameCX296737
Unique NameCX296737
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig789 contig Ccv1_Contig789:376..1036. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU_MYCS2 (Elongation factor Tu OS=Mycobacterium smegmatis GN=tuf PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.699e-27
Identity = 79/206 (38.35%), Postives = 115/206 (55.83%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKG-PTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 617
            +D    ER+RGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK DA      +   + +  EV   L    ++ E+ P V +S     EGD          W K    L++A+D +I +P R +DKP  +P++DV+ I G GTV  GRVE GV+
Sbjct:   52 IDNAPEERQRGITINISHVEYQTDKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKSDAVD---DEELIELVEMEVRELLAAQDFD-EEAPVVRVSALKALEGDP--------KWVKSVEELMEAVDASIPDPVRETDKPFLMPVEDVFTITGRGTVVTGRVERGVI 238          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU_GEOSL (Elongation factor Tu OS=Geobacter sulfurreducens GN=tuf1 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.699e-27
Identity = 74/205 (36.10%), Postives = 109/205 (53.17%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 626
            +D    ERERGITI  +  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D       +   + +  E+   L    +  + +P +  S  +G N       L       L++A+DN I EP+R  DKP  +P++DV+ I G GTV  GRVE G++K G
Sbjct:   50 IDNAPEERERGITIATSHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKADMVD---DEELLELVELEIRELLSSYDFPGDDIPIIKGSALKGLN--GDKDELGEEAILKLMEAVDNYIPEPERAVDKPFLMPVEDVFSISGRGTVATGRVERGIVKVG 242          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU2_WOLPM (Elongation factor Tu 2 OS=Wolbachia pipientis wMel GN=tuf2 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.699e-27
Identity = 75/208 (36.06%), Postives = 107/208 (51.44%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 626
            +DK   ER+RGITI  A  +++T K +   +D PGH D++KNMI G +Q D A+L++    G          QTREH LLA  +GV  ++   NK D           D +  EV   L K G+  ++VP V    +   E D+      ++D      L++ LD  +  P RP D P  LP++DV+ I G GTV  GR+E G +K G
Sbjct:   45 IDKAPEERKRGITIATAHVEYQTEKRHYAHVDCPGHADYVKNMIVGAAQMDAAILVVSGVDGPMP-------QTREHILLAKQVGVGYIVVYINKADVA----DADMIDLVEMEVRELLSKYGFPGDEVPVVVGSALKALEDDSSEYGKKSID-----KLMEKLDEYVAVPPRPVDLPFLLPIEDVFSISGRGTVVTGRIEKGEIKTG 236          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU2_PELTS (Elongation factor Tu 2 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.699e-27
Identity = 75/206 (36.41%), Postives = 109/206 (52.91%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGP-TLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 626
            +D    ERERGITI+ A  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D           D  V+E+ S  +  G   +++P +  S  +           +W K    L+DA+D  I  P+R  DKP  +P++DV+ I G GTV  GR+E G +K G
Sbjct:   50 IDNAPEERERGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVYLNKADMVDDPELLELVDMEVRELLSTYEFPG---DEIPIITGSALKAMECACGKRECEWCKSIWELMDAVDEYIPTPQRAVDKPFLMPVEDVFSITGRGTVATGRIERGQVKVG 245          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU1_WOLPM (Elongation factor Tu 1 OS=Wolbachia pipientis wMel GN=tuf1 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.699e-27
Identity = 75/208 (36.06%), Postives = 107/208 (51.44%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 626
            +DK   ER+RGITI  A  +++T K +   +D PGH D++KNMI G +Q D A+L++    G          QTREH LLA  +GV  ++   NK D           D +  EV   L K G+  ++VP V    +   E D+      ++D      L++ LD  +  P RP D P  LP++DV+ I G GTV  GR+E G +K G
Sbjct:   45 IDKAPEERKRGITIATAHVEYQTEKRHYAHVDCPGHADYVKNMIVGAAQMDAAILVVSGVDGPMP-------QTREHILLAKQVGVGYIVVYINKADVA----DADMIDLVEMEVRELLSKYGFPGDEVPVVVGSALKALEDDSSEYGKKSID-----KLMEKLDEYVAVPPRPVDLPFLLPIEDVFSISGRGTVVTGRIEKGEIKTG 236          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU1_PELTS (Elongation factor Tu 1 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.699e-27
Identity = 75/206 (36.41%), Postives = 109/206 (52.91%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGP-TLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 626
            +D    ERERGITI+ A  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D           D  V+E+ S  +  G   +++P +  S  +           +W K    L+DA+D  I  P+R  DKP  +P++DV+ I G GTV  GR+E G +K G
Sbjct:   50 IDNAPEERERGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVYLNKADMVDDPELLELVDMEVRELLSTYEFPG---DEIPIITGSALKAMECACGKRECEWCKSIWELMDAVDEYIPTPQRAVDKPFLMPVEDVFSITGRGTVATGRIERGQVKVG 245          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU_SYMTH (Elongation factor Tu OS=Symbiobacterium thermophilum GN=tuf PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.267e-26
Identity = 74/208 (35.58%), Postives = 112/208 (53.85%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 626
            +DK   ERERGITI+ +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L +  +  +++PF+    +   EGD    ++          L+DA+D+ I  P+R +DKP  +P++DV+ I G GTV  GRVE G  K G
Sbjct:   50 IDKAPEERERGITINTSHVEYETDARHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPAIVVFLNKCDMVD---DEELLELVELEVRELLNQYEFPGDEIPFIRGSALKALEGDPKYVKAIE-------ELMDAVDSYIPTPQRDADKPFLMPIEDVFTITGRGTVVTGRVERGKCKVG 240          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU_STRPZ (Elongation factor Tu OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=tuf PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.267e-26
Identity = 75/210 (35.71%), Postives = 114/210 (54.29%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDN-----MIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLK 620
            +D    ERERGITI+ A  ++ET   +   IDAPGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D       +   + +  E+   L +  +  + +P +    +   EGD+     ++E  + +D Y           I EP+R +DKPL LP++DV+ I G GTV  GR++ G ++
Sbjct:   53 IDAAPEERERGITINTAHVEYETETRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKVDLVD---DEELLELVEMEIRDLLSEYDFPGDDLPVIQGSALKALEGDSKYEDIIMELMSTVDEY-----------IPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGTVR 241          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU_STRP8 (Elongation factor Tu OS=Streptococcus pyogenes serotype M18 GN=tuf PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.267e-26
Identity = 75/210 (35.71%), Postives = 114/210 (54.29%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDN-----MIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLK 620
            +D    ERERGITI+ A  ++ET   +   IDAPGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D       +   + +  E+   L +  +  + +P +    +   EGD+     ++E  + +D Y           I EP+R +DKPL LP++DV+ I G GTV  GR++ G ++
Sbjct:   53 IDAAPEERERGITINTAHVEYETETRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKVDLVD---DEELLELVEMEIRDLLSEYDFPGDDLPVIQGSALKALEGDSKYEDIIMELMSTVDEY-----------IPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGTVR 241          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU_SCHPO (Elongation factor Tu, mitochondrial OS=Schizosaccharomyces pombe GN=tuf1 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.267e-26
Identity = 74/205 (36.10%), Postives = 110/205 (53.66%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 626
            +DK   E+ RGITI  A  ++ET   +   +D PGH D+IKNMITG +  D A++++ +T G          QTREH LLA  +GVKQ++   NK+D   P       + +  E+   L + G++ +  P V  SG     +  R   +       L++A+D+ I  P+R +D P  + ++DV+ I G GTV  GRVE G LK G
Sbjct:   91 IDKAPEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQMP-------QTREHLLLARQVGVKQIVVYINKVDMVEPD----MIELVEMEMRELLSEYGFDGDNTPIV--SGSALCALEGREPEIGLNSITKLMEAVDSYITLPERKTDVPFLMAIEDVFSISGRGTVVTGRVERGTLKKG 282          
The following BLAST results are available for this feature:
BLAST of CX296737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_MYCS29.699e-2738.35Elongation factor Tu OS=Mycobacterium smegmatis GN... [more]
EFTU_GEOSL9.699e-2736.10Elongation factor Tu OS=Geobacter sulfurreducens G... [more]
EFTU2_WOLPM9.699e-2736.06Elongation factor Tu 2 OS=Wolbachia pipientis wMel... [more]
EFTU2_PELTS9.699e-2736.41Elongation factor Tu 2 OS=Pelotomaculum thermoprop... [more]
EFTU1_WOLPM9.699e-2736.06Elongation factor Tu 1 OS=Wolbachia pipientis wMel... [more]
EFTU1_PELTS9.699e-2736.41Elongation factor Tu 1 OS=Pelotomaculum thermoprop... [more]
EFTU_SYMTH1.267e-2635.58Elongation factor Tu OS=Symbiobacterium thermophil... [more]
EFTU_STRPZ1.267e-2635.71Elongation factor Tu OS=Streptococcus pyogenes ser... [more]
EFTU_STRP81.267e-2635.71Elongation factor Tu OS=Streptococcus pyogenes ser... [more]
EFTU_SCHPO1.267e-2636.10Elongation factor Tu, mitochondrial OS=Schizosacch... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05802C03SK FerrChloL1 Citrus clementina cDNA clone C05802C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296737 ID=CX296737; Name=CX296737; organism=Citrus clementina; type=EST; length=661bp
AGTACGCCTGGGTGCTCGACAAGCTCACGGCTGAGCGTGAACGTGGTATT
ACCATTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCAC
CGTCATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCG
GTACCTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCCACCACCGGT
GGTTTTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTT
GCTTGCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGA
TGGACGCCACCACCCCCAAGTACTCAAAGGCTAGGTACGATGAAATTGTG
AAGGAGGTCTCTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGT
CCCATTCGTGCCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGT
CTACCAACCTTGACTGGTACAAGGGTCCAACCCTGCTGGACGCTCTTGAC
AATATCAATGAGCCAAAGAGGCCCTCAGACAAGCCCCTTCGTCTGCCACT
CCAGGACGTGTACAAGATTGGTGGCATTGGAACCGTCCCAGTGGGTCGCG
TTGAGACCGGTGTCCTCAAGCCTGGTATGGTGGTGACATTTGGCCCCTCT
GGATTGACAAC
back to top