CX296737

Overview
NameCX296737
Unique NameCX296737
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig789 contig Ccv1_Contig789:376..1036. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU_BRASO (Elongation factor Tu OS=Bradyrhizobium sp. (strain ORS278) GN=tuf PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.654e-26
Identity = 72/208 (34.62%), Postives = 108/208 (51.92%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINE----PKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 626
            +DK   E+ RGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D           + +  EV   L K  +  +K+P +  S        ++    D      +L+ + N++E    P+RP D+P  +P++DV+ I G GTV  GRVE GV+K G
Sbjct:   50 IDKAPEEKARGITISTAHVEYETQNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPALVVFLNKCDMVD---DPELLELVELEVRELLSKYEFPGDKIPIIKGSALAALEDSDKKLGHD-----AILELMRNVDEYIPQPERPIDQPFLMPVEDVFSISGRGTVVTGRVERGVIKVG 242          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU_BRASB (Elongation factor Tu OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=tuf PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.654e-26
Identity = 72/208 (34.62%), Postives = 108/208 (51.92%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINE----PKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 626
            +DK   E+ RGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D           + +  EV   L K  +  +K+P +  S        ++    D      +L+ + N++E    P+RP D+P  +P++DV+ I G GTV  GRVE GV+K G
Sbjct:   50 IDKAPEEKARGITISTAHVEYETQNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPALVVFLNKCDMVD---DPELLELVELEVRELLSKYEFPGDKIPIIKGSALAALEDSDKKLGHD-----AILELMRNVDEYIPQPERPIDQPFLMPVEDVFSISGRGTVVTGRVERGVIKVG 242          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU_BORAP (Elongation factor Tu OS=Borrelia afzelii (strain PKo) GN=tuf PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.654e-26
Identity = 74/208 (35.58%), Postives = 114/208 (54.81%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVV 635
            +D    E+ RGITI+    ++ET   +   +D PGH D+IKNMITG +Q D A+L++ + +G        + QT+EH LLA  +G+K++I   NK+D   P+      + +  EV   ++K G++    P +  S F   +  E        K   LL+++DN  + P+R  DKP  L ++DV+ I G GTV  GR+E GV+K G  V
Sbjct:   51 IDNAPEEKARGITINARHIEYETANRHYAHVDCPGHADYIKNMITGAAQMDAAILLVAADSGA-------EPQTKEHLLLAQRMGIKKIIVFLNKLDLADPEL----VELVEVEVLELVEKYGFS-ANTPIIKGSAFGAMSNPEDPEATKCVK--ELLESMDNYFDLPERDIDKPFLLAVEDVFSISGRGTVATGRIERGVIKVGQEV 244          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU_STRU0 (Elongation factor Tu OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=tuf PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.161e-26
Identity = 74/205 (36.10%), Postives = 111/205 (54.15%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLK 620
            +D    ERERGITI+ A  ++ET   +   IDAPGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D       +   + +  E+   L +  +  + +P +    +   EGD+  E            +  A + I EP+R +DKPL LP++DV+ I G GTV  GR++ G ++
Sbjct:   53 IDAAPEERERGITINTAHVEYETETRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKIDLVD---DEELLELVEMEIRDLLSEYDFPGDDLPVIQGSALKALEGDSKYEDIIM------ELMKTADEYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGTVR 241          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU_SALAI (Elongation factor Tu OS=Salinispora arenicola (strain CNS-205) GN=tuf PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.161e-26
Identity = 77/208 (37.02%), Postives = 112/208 (53.85%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWY-KGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKP 623
            +DK   E+ RGITI IA  +++T   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L    Y  + +P V +S     EGD         +W  K   L+ A+D +I +P+R ++KP  +P++DV+ I G GTV  GR E G+LKP
Sbjct:   52 IDKAPEEKARGITISIAHVEYQTEARHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYIVVALNKSDMVD---DEELLELVELEVRELLSSQEYPGDDLPVVRVSALKALEGDP--------EWAGKLMELMTAVDTSIPQPERETEKPFLMPIEDVFTITGRGTVVTGRAERGILKP 241          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU_RICBR (Elongation factor Tu OS=Rickettsia bellii (strain RML369-C) GN=tuf PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.161e-26
Identity = 73/211 (34.60%), Postives = 113/211 (53.55%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVV 635
            +D    E+ERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV +M+   NK+D           + +  EV   L K  +  +++P +    +   EG    E++ +        L+DA+D+ I +P R ++KP  +P++DV+ I G GTV  GR+E G +K G  V
Sbjct:   51 IDAAPEEKERGITISTAHVEYETKSRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPKMVVFLNKVDMVD---DPDLLELVEMEVRELLSKYDFPGDEIPIIRGSALQALEGKPEGEKAIH-------ELMDAVDSYIPQPIRETEKPFLMPIEDVFSISGRGTVVTGRIEAGKVKVGEAV 244          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU_RICB8 (Elongation factor Tu OS=Rickettsia bellii (strain OSU 85-389) GN=tuf PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.161e-26
Identity = 73/211 (34.60%), Postives = 113/211 (53.55%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVV 635
            +D    E+ERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV +M+   NK+D           + +  EV   L K  +  +++P +    +   EG    E++ +        L+DA+D+ I +P R ++KP  +P++DV+ I G GTV  GR+E G +K G  V
Sbjct:   51 IDAAPEEKERGITISTAHVEYETKSRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPKMVVFLNKVDMVD---DPDLLELVEMEVRELLSKYDFPGDEIPIIRGSALQALEGKPEGEKAIH-------ELMDAVDSYIPQPIRETEKPFLMPIEDVFSISGRGTVVTGRIEAGKVKVGEAV 244          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU_MYCVP (Elongation factor Tu OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=tuf PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.161e-26
Identity = 77/206 (37.38%), Postives = 114/206 (55.34%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKG-PTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 617
            +D    ER+RGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L    ++ E+ P V +S     EGD          W K    L++A+D +I +P R +DKP  +P++DV+ I G GTV  GRVE G++
Sbjct:   52 IDNAPEERQRGITINISHVEYQTDKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADMVD---DEELIELVEMEVRELLAAQDFD-EEAPVVKVSALKALEGDE--------KWVKSVEELMEAVDESIPDPVRETDKPFLMPVEDVFTITGRGTVVTGRVERGII 238          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU_MYCA9 (Elongation factor Tu OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=tuf PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.161e-26
Identity = 76/203 (37.44%), Postives = 111/203 (54.68%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKG-PTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 617
            +D    E+ RGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D    +      +  V+E+ S     G N   V    +   EGD         +W K    L+DA+D +I +P R ++KP  +P++DV+ I G GTV  GRVE GV+
Sbjct:   52 IDNAPEEKARGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKSDMVDDEELLELVEMEVRELLSSQDFDGDNAPVVRVSALKALEGD--------AEWGKTVADLMDAVDESIPDPVRETEKPFLMPVEDVFTITGRGTVVTGRVERGVI 239          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU_LEPIN (Elongation factor Tu OS=Leptospira interrogans GN=tuf PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.161e-26
Identity = 73/206 (35.44%), Postives = 105/206 (50.97%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLK 620
            +D    E+ RGITI  +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  +I   NK D           + +  +V   L K  +  +  P V    +   EGD      + +       L++ALD  +  PKR  DKP  +P++DV+ I G GTV  GRVE GVLK
Sbjct:   52 IDNAPEEKARGITIATSHQEYETANRHYAHVDCPGHADYVKNMITGAAQMDAAILVVSATDGPMP-------QTKEHILLARQVGVPYVIVFINKADMLAADERAEMIEMVEMDVRELLNKYSFPGDTTPIVHGSAVKALEGD-----ESEIGMPAILKLMEALDTFVPNPKRVIDKPFLMPVEDVFSITGRGTVATGRVEQGVLK 245          
The following BLAST results are available for this feature:
BLAST of CX296737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_BRASO1.654e-2634.62Elongation factor Tu OS=Bradyrhizobium sp. (strain... [more]
EFTU_BRASB1.654e-2634.62Elongation factor Tu OS=Bradyrhizobium sp. (strain... [more]
EFTU_BORAP1.654e-2635.58Elongation factor Tu OS=Borrelia afzelii (strain P... [more]
EFTU_STRU02.161e-2636.10Elongation factor Tu OS=Streptococcus uberis (stra... [more]
EFTU_SALAI2.161e-2637.02Elongation factor Tu OS=Salinispora arenicola (str... [more]
EFTU_RICBR2.161e-2634.60Elongation factor Tu OS=Rickettsia bellii (strain ... [more]
EFTU_RICB82.161e-2634.60Elongation factor Tu OS=Rickettsia bellii (strain ... [more]
EFTU_MYCVP2.161e-2637.38Elongation factor Tu OS=Mycobacterium vanbaalenii ... [more]
EFTU_MYCA92.161e-2637.44Elongation factor Tu OS=Mycobacterium abscessus (s... [more]
EFTU_LEPIN2.161e-2635.44Elongation factor Tu OS=Leptospira interrogans GN=... [more]

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Properties
Property NameValue
Genbank descriptionC05802C03SK FerrChloL1 Citrus clementina cDNA clone C05802C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296737 ID=CX296737; Name=CX296737; organism=Citrus clementina; type=EST; length=661bp
AGTACGCCTGGGTGCTCGACAAGCTCACGGCTGAGCGTGAACGTGGTATT
ACCATTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCAC
CGTCATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCG
GTACCTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCCACCACCGGT
GGTTTTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTT
GCTTGCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGA
TGGACGCCACCACCCCCAAGTACTCAAAGGCTAGGTACGATGAAATTGTG
AAGGAGGTCTCTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGT
CCCATTCGTGCCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGT
CTACCAACCTTGACTGGTACAAGGGTCCAACCCTGCTGGACGCTCTTGAC
AATATCAATGAGCCAAAGAGGCCCTCAGACAAGCCCCTTCGTCTGCCACT
CCAGGACGTGTACAAGATTGGTGGCATTGGAACCGTCCCAGTGGGTCGCG
TTGAGACCGGTGTCCTCAAGCCTGGTATGGTGGTGACATTTGGCCCCTCT
GGATTGACAAC
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