CX296737

Overview
NameCX296737
Unique NameCX296737
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig789 contig Ccv1_Contig789:376..1036. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU_LEPIC (Elongation factor Tu OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=tuf PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.161e-26
Identity = 73/206 (35.44%), Postives = 105/206 (50.97%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLK 620
            +D    E+ RGITI  +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  +I   NK D           + +  +V   L K  +  +  P V    +   EGD      + +       L++ALD  +  PKR  DKP  +P++DV+ I G GTV  GRVE GVLK
Sbjct:   52 IDNAPEEKARGITIATSHQEYETANRHYAHVDCPGHADYVKNMITGAAQMDAAILVVSATDGPMP-------QTKEHILLARQVGVPYVIVFINKADMLAADERAEMIEMVEMDVRELLNKYSFPGDTTPIVHGSAVKALEGD-----ESEIGMPAILKLMEALDTFVPNPKRVIDKPFLMPVEDVFSITGRGTVATGRVEQGVLK 245          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU_LACH4 (Elongation factor Tu OS=Lactobacillus helveticus (strain DPC 4571) GN=tuf PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.161e-26
Identity = 76/208 (36.54%), Postives = 109/208 (52.40%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 626
            +D    E+ERGITI+ A  ++ET K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D           D +  EV   L +  Y  + +P V    +   EGD   +            L+D +D  I  P+R +DKP  +P++DV+ I G GTV  GR++ G +K G
Sbjct:   51 IDAAPEEKERGITINTAHVEYETEKRHYAHMDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVNYIVVFLNKCDLVD---DPELIDLVEMEVRDLLTEYDYPGDDIPVVRGSALKALEGDKEAQEQI-------LKLMDTVDEYIPTPERQTDKPFLMPVEDVFTITGRGTVASGRIDRGTVKVG 241          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU_LACCB (Elongation factor Tu OS=Lactobacillus casei (strain BL23) GN=tuf PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.161e-26
Identity = 75/211 (35.55%), Postives = 111/211 (52.61%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDNINE----PKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 626
            +D    E+ERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D           D +  EV   L +  Y  + +P +    +   EGD   E+           +++ +D I+E    P R +DKP  +P++DV+ I G GTV  GR++ G +K G
Sbjct:   51 IDAAPEEKERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVDYIVVFLNKTDLVD---DPELIDLVEMEVRELLSEYDYPGDDIPVIRGSALKALEGDPEQEK----------VIMELMDTIDEYIPTPVRETDKPFLMPVEDVFTITGRGTVASGRIDRGTVKIG 241          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU_LACC3 (Elongation factor Tu OS=Lactobacillus casei (strain ATCC 334) GN=tuf PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.161e-26
Identity = 75/211 (35.55%), Postives = 111/211 (52.61%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDNINE----PKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 626
            +D    E+ERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D           D +  EV   L +  Y  + +P +    +   EGD   E+           +++ +D I+E    P R +DKP  +P++DV+ I G GTV  GR++ G +K G
Sbjct:   51 IDAAPEEKERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVDYIVVFLNKTDLVD---DPELIDLVEMEVRELLSEYDYPGDDIPVIRGSALKALEGDPEQEK----------VIMELMDTIDEYIPTPVRETDKPFLMPVEDVFTITGRGTVASGRIDRGTVKIG 241          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU_KINRD (Elongation factor Tu OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=tuf PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.161e-26
Identity = 77/206 (37.38%), Postives = 111/206 (53.88%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDW-YKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 617
            +DK   ER+RGITI IA  +++T   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QT+EH +LA  +GV  ++   NK D       +   + +  EV   L    +  + VP V +S     EGD         +W  K   L+DA+D  I EP+R  D+P  +P++DV+ I G GTV  GR+E GVL
Sbjct:   52 IDKAPEERQRGITISIAHVEYQTEARHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTKEHVILARQVGVPYIVVALNKADMVE---DEELLELVEMEVRELLSSYEFPGDDVPVVRVSALKALEGD--------AEWGDKLMELMDAVDTAIPEPERAIDQPFLMPIEDVFTITGRGTVVTGRIERGVL 239          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU_COREF (Elongation factor Tu OS=Corynebacterium efficiens GN=tuf PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.161e-26
Identity = 79/209 (37.80%), Postives = 111/209 (53.11%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGD-----NMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 617
            +DK   E+ERGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L +  Y+ E  P V IS     EGD      ++E     D           DNI +P R +DKP  +P++D++ I G GTV  GRVE G L
Sbjct:   52 IDKAPEEKERGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKCDMVD---DEEIIELVEMEVRELLAEQDYD-EDAPIVHISALKALEGDEKWAGQILELMQACD-----------DNIPDPVRETDKPFLMPIEDIFTITGRGTVVTGRVERGTL 238          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU_CHLPN (Elongation factor Tu OS=Chlamydia pneumoniae GN=tuf PE=3 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 2.161e-26
Identity = 73/206 (35.44%), Postives = 114/206 (55.34%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGD-NMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLK 620
            +D    E+ RGITI+ +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK+D  + + ++   D +  E+S  L++ GY  +  P +    +   EGD N IE+   L       +    DNI  P+R  DKP  +P++DV+ I G GTV  GR+E G++K
Sbjct:   50 IDNTPEEKARGITINASHVEYETPNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGAMP-------QTKEHILLARQVGVPYIVVFLNKVDMISQEDAEL-IDLVEMELSELLEEKGY--KGCPIIRGSALKALEGDANYIEKVREL-------MQAVDDNIPTPEREIDKPFLMPIEDVFSISGRGTVVTGRIERGIVK 238          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU_BAUCH (Elongation factor Tu OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=tuf PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.161e-26
Identity = 78/207 (37.68%), Postives = 111/207 (53.62%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDW-YKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 626
            +D    E+ RGITI+ +  +++T   +   +D PGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV  +I   NK D        +   E+V+ EV   L +  +  E  P +      G  +     ++DW  K   L + LD+ I EPKR  DKP  LP++DV+ I G GTV  GRVE G+LK G
Sbjct:   50 IDNAPEEKARGITINTSHVEYDTKNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVPYIIVFINKCDMV----DDSELLELVEIEVRELLSQYEFPGENTPII-----RGSALKALEHDVDWTSKIIELAEVLDSYIPEPKRAIDKPFLLPIEDVFSISGRGTVVTGRVERGILKVG 240          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU2_STRRA (Elongation factor Tu-2 OS=Streptomyces ramocissimus GN=tuf2 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.161e-26
Identity = 77/205 (37.56%), Postives = 109/205 (53.17%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 617
            +DK   ER+RGITI IA  +++T   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK D       +   + +  EV   L +  +  + VP V +S     EGD    RS          LLDA+D  + EP R  D+P  +P++DV+ I G GTV  GR+E G L
Sbjct:   52 IDKAPEERQRGITISIAHVEYQTEARHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTKEHVLLARQVGVPYIVVALNKTDMVD---DEEILELVELEVRELLTEYEFPGDDVPVVKVSALRALEGDPRWTRSV-------LELLDAVDEFVPEPVRDVDRPFLMPIEDVFTITGRGTVVTGRIERGTL 239          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EFTU_ZYMMO (Elongation factor Tu OS=Zymomonas mobilis GN=tuf PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.822e-26
Identity = 75/206 (36.41%), Postives = 115/206 (55.83%), Query Frame = 3
Query:   15 LDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD-ATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 626
            +DK   ERERGITI  +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D    P+  +    EI + +SSY     +  + +P V  S      + +++  +      +L+ A+D  I +P+RP DK   +P++DV+ I G GTV  GRVETG++K G
Sbjct:   51 IDKAPEERERGITISTSHVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPALVVFMNKVDQVDDPELLELVEMEIRELLSSY----DFPGDDIPIVKGSALAA--LEDKNPEIGKEAILSLMAAVDEYIPQPERPLDKSFLMPIEDVFSISGRGTVVTGRVETGIVKVG 243          
The following BLAST results are available for this feature:
BLAST of CX296737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_LEPIC2.161e-2635.44Elongation factor Tu OS=Leptospira interrogans ser... [more]
EFTU_LACH42.161e-2636.54Elongation factor Tu OS=Lactobacillus helveticus (... [more]
EFTU_LACCB2.161e-2635.55Elongation factor Tu OS=Lactobacillus casei (strai... [more]
EFTU_LACC32.161e-2635.55Elongation factor Tu OS=Lactobacillus casei (strai... [more]
EFTU_KINRD2.161e-2637.38Elongation factor Tu OS=Kineococcus radiotolerans ... [more]
EFTU_COREF2.161e-2637.80Elongation factor Tu OS=Corynebacterium efficiens ... [more]
EFTU_CHLPN2.161e-2635.44Elongation factor Tu OS=Chlamydia pneumoniae GN=tu... [more]
EFTU_BAUCH2.161e-2637.68Elongation factor Tu OS=Baumannia cicadellinicola ... [more]
EFTU2_STRRA2.161e-2637.56Elongation factor Tu-2 OS=Streptomyces ramocissimu... [more]
EFTU_ZYMMO2.822e-2636.41Elongation factor Tu OS=Zymomonas mobilis GN=tuf P... [more]

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Properties
Property NameValue
Genbank descriptionC05802C03SK FerrChloL1 Citrus clementina cDNA clone C05802C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296737 ID=CX296737; Name=CX296737; organism=Citrus clementina; type=EST; length=661bp
AGTACGCCTGGGTGCTCGACAAGCTCACGGCTGAGCGTGAACGTGGTATT
ACCATTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCAC
CGTCATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCG
GTACCTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCCACCACCGGT
GGTTTTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTT
GCTTGCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGA
TGGACGCCACCACCCCCAAGTACTCAAAGGCTAGGTACGATGAAATTGTG
AAGGAGGTCTCTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGT
CCCATTCGTGCCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGT
CTACCAACCTTGACTGGTACAAGGGTCCAACCCTGCTGGACGCTCTTGAC
AATATCAATGAGCCAAAGAGGCCCTCAGACAAGCCCCTTCGTCTGCCACT
CCAGGACGTGTACAAGATTGGTGGCATTGGAACCGTCCCAGTGGGTCGCG
TTGAGACCGGTGTCCTCAAGCCTGGTATGGTGGTGACATTTGGCCCCTCT
GGATTGACAAC
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