CX296737

Overview
NameCX296737
Unique NameCX296737
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig789 contig Ccv1_Contig789:376..1036. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EF1A_ASHGO (Elongation factor 1-alpha OS=Ashbya gossypii GN=TEF PE=3 SV=1)

HSP 1 Score: 340.117 bits (871), Expect = 5.964e-93
Identity = 171/231 (74.03%), Postives = 190/231 (82.25%), Query Frame = 3
Query:    3 YAWVLDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWY------------KGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT 659
            YAWVLDKL AERERGITIDIALWKFET KY+ TVIDAPGHRDFIKNMITGTSQADCA+LII    G FEAGISKDGQTREHALLA+TLGVKQ+I   NKMD+   K+ ++RY EIVKE S+++KKVGYNP+ VPFVPISG+ GDNMIE +TN  WY            KG TLL+A+D I  P RP+DK LRLPLQDVYKIGGIGTVPVGRVETGV+KPGMVVTF PSG+T
Sbjct:   56 YAWVLDKLKAERERGITIDIALWKFETPKYHVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAYTLGVKQLIVAINKMDSV--KWDESRYQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGAVKGKTLLEAIDAIEPPVRPTDKALRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPSGVT 284          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EF1A1_EUPCR (Elongation factor 1-alpha 1 OS=Euplotes crassus GN=EFA1 PE=3 SV=1)

HSP 1 Score: 338.961 bits (868), Expect = 1.329e-92
Identity = 166/217 (76.50%), Postives = 184/217 (84.79%), Query Frame = 3
Query:    3 YAWVLDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSG 653
            YAWVLDKL AERERGITIDIALWKFET   + T+IDAPGHRDFIKNMITGTSQAD A+LII S TG FEAGISK+GQTREHALLA+T+GVKQM+   NKMD+T P YS+ RY+EI KEVS++L KVGY P K+ FVPISGF+GDN+ E STN+ WYKGPTL  ALD+   PKRP  KPLRLPLQDVYKIGGIGTVPVGRVETGVLK GMV+TF P G
Sbjct:   56 YAWVLDKLKAERERGITIDIALWKFETENRHYTIIDAPGHRDFIKNMITGTSQADAAILIIASGTGEFEAGISKEGQTREHALLAYTMGVKQMVVAMNKMDSTEPPYSEDRYEEIKKEVSTFLAKVGYKPAKMNFVPISGFQGDNIQENSTNMPWYKGPTLCAALDSFKIPKRPIAKPLRLPLQDVYKIGGIGTVPVGRVETGVLKAGMVITFAPKG 272          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EF1A_SCHCO (Elongation factor 1-alpha OS=Schizophyllum commune GN=TEF1 PE=3 SV=1)

HSP 1 Score: 338.576 bits (867), Expect = 1.735e-92
Identity = 171/231 (74.03%), Postives = 189/231 (81.82%), Query Frame = 3
Query:    3 YAWVLDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWY------------KGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT 659
            YAWVLDKL AERERGITIDIALWKFET KY  TVIDAPGHRDFIKNMITGTSQADCA+L I   TG FEAGISKDGQTREHALLAFTLGV+Q+I   NKMD T  K+S+ R++EIVKE S+++KKVGYNP+ V FVPISG+ GDNM+E STN+ WY            KG TLLDA+D I  P RPSDKPLRLPLQDVYKIGGIGTVPVGRVETG++K GMVVTF PS +T
Sbjct:   56 YAWVLDKLKAERERGITIDIALWKFETPKYMVTVIDAPGHRDFIKNMITGTSQADCAILTIAGGTGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDTT--KWSEDRFNEIVKETSTFIKKVGYNPKTVAFVPISGWHGDNMLEESTNMPWYKGWTKETKAGVVKGKTLLDAIDAIEPPVRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGIIKAGMVVTFAPSNVT 284          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EF1A_BLAHO (Elongation factor 1-alpha OS=Blastocystis hominis PE=2 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 3.865e-92
Identity = 165/217 (76.04%), Postives = 184/217 (84.79%), Query Frame = 3
Query:    3 YAWVLDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYN--PEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGP 647
            YAWVL K+ AERERGITIDI+LWKFET K + T+IDAPGHRDFIKNMITGTSQAD A+L+I S  G FEAG SK+GQTREHALLA TLGVKQMI CCNKMD  +  YS+ARY EI  E++S+L KVGY    E++PF+PISGF GDNMIE S N+ WYKGPTLL+ALDN++ PKRP DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGM VTF P
Sbjct:   56 YAWVLAKMKAERERGITIDISLWKFETRKDFFTIIDAPGHRDFIKNMITGTSQADVAILVIASGAGEFEAGYSKNGQTREHALLANTLGVKQMIVCCNKMDDKSVNYSEARYKEIKNEMTSFLTKVGYAKVEERIPFIPISGFNGDNMIEHSANMPWYKGPTLLEALDNVHPPKRPVDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMTVTFAP 272          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EF1A_HELZE (Elongation factor 1-alpha (Fragment) OS=Heliothis zea PE=3 SV=1)

HSP 1 Score: 337.035 bits (863), Expect = 5.048e-92
Identity = 166/231 (71.86%), Postives = 189/231 (81.82%), Query Frame = 3
Query:    3 YAWVLDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYK------------GPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT 659
            YAWVLDKL AERERGITIDIALWKFET KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD+T P YS++R++EI KEVSSY+KK+GYNP  V FVPISG+ GDNM+E ST + W+K            G  L++ALD I  P RP+DK LRLPLQDVYKIGGIGTVPVGRVETG+LKPG +V F P+ +T
Sbjct:   42 YAWVLDKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEASTKMPWFKGWNVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTIVVFAPANIT 272          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EF1A_HELVI (Elongation factor 1-alpha (Fragment) OS=Heliothis virescens PE=3 SV=1)

HSP 1 Score: 337.035 bits (863), Expect = 5.048e-92
Identity = 166/231 (71.86%), Postives = 189/231 (81.82%), Query Frame = 3
Query:    3 YAWVLDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYK------------GPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT 659
            YAWVLDKL AERERGITIDIALWKFET KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD+T P YS++R++EI KEVSSY+KK+GYNP  V FVPISG+ GDNM+E ST + W+K            G  L++ALD I  P RP+DK LRLPLQDVYKIGGIGTVPVGRVETG+LKPG +V F P+ +T
Sbjct:   42 YAWVLDKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEASTKMPWFKGWNVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTIVVFAPANIT 272          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EF1A_HELGL (Elongation factor 1-alpha (Fragment) OS=Helicoverpa gelotopoeon PE=3 SV=1)

HSP 1 Score: 337.035 bits (863), Expect = 5.048e-92
Identity = 166/231 (71.86%), Postives = 189/231 (81.82%), Query Frame = 3
Query:    3 YAWVLDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYK------------GPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT 659
            YAWVLDKL AERERGITIDIALWKFET KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD+T P YS++R++EI KEVSSY+KK+GYNP  V FVPISG+ GDNM+E ST + W+K            G  L++ALD I  P RP+DK LRLPLQDVYKIGGIGTVPVGRVETG+LKPG +V F P+ +T
Sbjct:   42 YAWVLDKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEASTKMPWFKGWNVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTIVVFAPANIT 272          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EF1A_HELDI (Elongation factor 1-alpha (Fragment) OS=Heliocheilus discalis PE=3 SV=1)

HSP 1 Score: 337.035 bits (863), Expect = 5.048e-92
Identity = 166/231 (71.86%), Postives = 189/231 (81.82%), Query Frame = 3
Query:    3 YAWVLDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYK------------GPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT 659
            YAWVLDKL AERERGITIDIALWKFET KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD+T P YS++R++EI KEVSSY+KK+GYNP  V FVPISG+ GDNM+E ST + W+K            G  L++ALD I  P RP+DK LRLPLQDVYKIGGIGTVPVGRVETG+LKPG +V F P+ +T
Sbjct:   42 YAWVLDKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEASTKMPWFKGWNVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTIVVFAPANIT 272          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EF1A_HELAM (Elongation factor 1-alpha (Fragment) OS=Helicoverpa armigera PE=3 SV=1)

HSP 1 Score: 337.035 bits (863), Expect = 5.048e-92
Identity = 166/231 (71.86%), Postives = 189/231 (81.82%), Query Frame = 3
Query:    3 YAWVLDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYK------------GPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT 659
            YAWVLDKL AERERGITIDIALWKFET KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD+T P YS++R++EI KEVSSY+KK+GYNP  V FVPISG+ GDNM+E ST + W+K            G  L++ALD I  P RP+DK LRLPLQDVYKIGGIGTVPVGRVETG+LKPG +V F P+ +T
Sbjct:   42 YAWVLDKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEASTKMPWFKGWNVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTIVVFAPANIT 272          
BLAST of CX296737 vs. ExPASy Swiss-Prot
Match: EF1A_HELAL (Elongation factor 1-alpha (Fragment) OS=Heliocheilus albipunctella PE=3 SV=1)

HSP 1 Score: 337.035 bits (863), Expect = 5.048e-92
Identity = 166/231 (71.86%), Postives = 189/231 (81.82%), Query Frame = 3
Query:    3 YAWVLDKLTAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYK------------GPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT 659
            YAWVLDKL AERERGITIDIALWKFET KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD+T P YS++R++EI KEVSSY+KK+GYNP  V FVPISG+ GDNM+E ST + W+K            G  L++ALD I  P RP+DK LRLPLQDVYKIGGIGTVPVGRVETG+LKPG +V F P+ +T
Sbjct:   42 YAWVLDKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEASTKMPWFKGWNVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTIVVFAPANIT 272          
The following BLAST results are available for this feature:
BLAST of CX296737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_ASHGO5.964e-9374.03Elongation factor 1-alpha OS=Ashbya gossypii GN=TE... [more]
EF1A1_EUPCR1.329e-9276.50Elongation factor 1-alpha 1 OS=Euplotes crassus GN... [more]
EF1A_SCHCO1.735e-9274.03Elongation factor 1-alpha OS=Schizophyllum commune... [more]
EF1A_BLAHO3.865e-9276.04Elongation factor 1-alpha OS=Blastocystis hominis ... [more]
EF1A_HELZE5.048e-9271.86Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]
EF1A_HELVI5.048e-9271.86Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]
EF1A_HELGL5.048e-9271.86Elongation factor 1-alpha (Fragment) OS=Helicoverp... [more]
EF1A_HELDI5.048e-9271.86Elongation factor 1-alpha (Fragment) OS=Heliocheil... [more]
EF1A_HELAM5.048e-9271.86Elongation factor 1-alpha (Fragment) OS=Helicoverp... [more]
EF1A_HELAL5.048e-9271.86Elongation factor 1-alpha (Fragment) OS=Heliocheil... [more]

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Properties
Property NameValue
Genbank descriptionC05802C03SK FerrChloL1 Citrus clementina cDNA clone C05802C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296737 ID=CX296737; Name=CX296737; organism=Citrus clementina; type=EST; length=661bp
AGTACGCCTGGGTGCTCGACAAGCTCACGGCTGAGCGTGAACGTGGTATT
ACCATTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCAC
CGTCATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCG
GTACCTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCCACCACCGGT
GGTTTTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTT
GCTTGCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGA
TGGACGCCACCACCCCCAAGTACTCAAAGGCTAGGTACGATGAAATTGTG
AAGGAGGTCTCTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGT
CCCATTCGTGCCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGT
CTACCAACCTTGACTGGTACAAGGGTCCAACCCTGCTGGACGCTCTTGAC
AATATCAATGAGCCAAAGAGGCCCTCAGACAAGCCCCTTCGTCTGCCACT
CCAGGACGTGTACAAGATTGGTGGCATTGGAACCGTCCCAGTGGGTCGCG
TTGAGACCGGTGTCCTCAAGCCTGGTATGGTGGTGACATTTGGCCCCTCT
GGATTGACAAC
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