CX296740

Overview
NameCX296740
Unique NameCX296740
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig928 contig Ccv1_Contig928:282..1039. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_CHLRE (40S ribosomal protein S3a OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_168484 PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 2.296e-66
Identity = 116/152 (76.32%), Postives = 132/152 (86.84%), Query Frame = -3
Query:  240 CLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPA 695
            CLTNFWGMDFTTDKLRSLVRKW TLIEA+VDVKTTD YTLR+FCI FTK+   Q+KRTCYAQ++QIRQIR+KM EI+  +A SCDLK LV KFI E IG++IEK+   IYPLQN FIRKVK+LKAPKFD+ KLMEVHGDYSE+VG K+ERPA
Sbjct:   96 CLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDGYTLRVFCISFTKKRQGQIKRTCYAQSAQIRQIRKKMMEIITREATSCDLKELVAKFIPESIGKDIEKSCQGIYPLQNTFIRKVKVLKAPKFDITKLMEVHGDYSEEVGAKIERPA 247          

HSP 2 Score: 28.4906 bits (62), Expect = 2.296e-66
Identity = 11/15 (73.33%), Postives = 14/15 (93.33%), Query Frame = -1
Query:  695 YRKIRLRAEDVQGKN 739
            +RK+RLR EDVQG+N
Sbjct:   81 FRKMRLRVEDVQGRN 95          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A2_VITVI (40S ribosomal protein S3a-2 OS=Vitis vinifera GN=GSVIVT00031140001 PE=3 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 4.260e-65
Identity = 117/134 (87.31%), Postives = 122/134 (91.04%), Query Frame = -3
Query:  291 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLME 692
            LTNFWGMDFTTDKLRSLVRKW TLIEA+VDVKTTDNYTLRMFCI FTK+  NQ K+T YAQ+SQIRQIRRKMREIM  QAASCDLK LV KFI E+IGREIEKAT SIYPLQNVFIRKVKILKAPKFDLGKLME
Sbjct:   97 LTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIAFTKKRQNQNKKTSYAQSSQIRQIRRKMREIMTTQAASCDLKELVRKFIPEMIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLME 230          

HSP 2 Score: 35.4242 bits (80), Expect = 4.260e-65
Identity = 16/16 (100.00%), Postives = 16/16 (100.00%), Query Frame = -1
Query:  692 YRKIRLRAEDVQGKNV 739
            YRKIRLRAEDVQGKNV
Sbjct:   81 YRKIRLRAEDVQGKNV 96          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_LENED (40S ribosomal protein S1 OS=Lentinula edodes GN=RPS1 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 6.534e-60
Identity = 106/157 (67.52%), Postives = 131/157 (83.44%), Query Frame = -3
Query:  231 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEP 701
            + CLTNF GMDFT+DKLRSLVRKW TLIEA+VDVKTTD Y LR+F IGFTKR P QV++T YAQ+SQ+R+IR+KM EIM  +A +CDLK LV+KF+ E IGREIEKA+ SIYPLQNV++RK KILKAPKFD+ KLME+HG+ +++ G K+ +   EP
Sbjct:   94 KNCLTNFHGMDFTSDKLRSLVRKWQTLIEAHVDVKTTDGYLLRLFAIGFTKRRPTQVRKTTYAQSSQVREIRKKMFEIMTREATNCDLKELVQKFVPEAIGREIEKASRSIYPLQNVYVRKAKILKAPKFDVSKLMELHGESTDETGTKIAKDFKEP 250          

HSP 2 Score: 26.9498 bits (58), Expect = 6.534e-60
Identity = 10/15 (66.67%), Postives = 14/15 (93.33%), Query Frame = -1
Query:  695 YRKIRLRAEDVQGKN 739
            +RKI+LR ++VQGKN
Sbjct:   81 FRKIKLRVDEVQGKN 95          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_LACBS (40S ribosomal protein S1 OS=Laccaria bicolor (strain S238N-H82) GN=RPS1 PE=3 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 4.185e-59
Identity = 103/157 (65.61%), Postives = 131/157 (83.44%), Query Frame = -3
Query:  231 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEP 701
            + CLTNF GMDFT+DKLRSLVRKW TL+EA+VDVKTTD Y LR+F IGFTKR P+QV++T YAQ+SQ+R+IR+KM EIM  +A +CDLK LV+KF+ E IGREIEKA  SIYPLQNV++RK KILK+PKFD+ KL+E+HGD +++ G ++ +   EP
Sbjct:   94 KNCLTNFHGMDFTSDKLRSLVRKWQTLVEAHVDVKTTDGYLLRLFAIGFTKRRPSQVRKTTYAQSSQVREIRKKMFEIMTREATNCDLKELVQKFVPEAIGREIEKAARSIYPLQNVYVRKAKILKSPKFDMSKLLELHGDSTDETGTRIAKDFKEP 250          

HSP 2 Score: 26.1794 bits (56), Expect = 4.185e-59
Identity = 9/15 (60.00%), Postives = 14/15 (93.33%), Query Frame = -1
Query:  695 YRKIRLRAEDVQGKN 739
            +RKI+LR +++QGKN
Sbjct:   81 FRKIKLRIDEIQGKN 95          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_COPC7 (40S ribosomal protein S1 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 2.056e-58
Identity = 104/155 (67.10%), Postives = 129/155 (83.23%), Query Frame = -3
Query:  231 CLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEP 695
            CLTNF GMDFT+DKLRSLVRKW TL+EA+VDVKTTD Y LR+F IGFTKR P QVK+T YAQ +Q+R++R+KM EI+  +A SCDLK LV+KF+ E IGREIEKA+ SIYPLQNV+IRK KILKAPKFD+ KL+E+HGD +++ G ++ +   EP
Sbjct:   96 CLTNFHGMDFTSDKLRSLVRKWQTLVEAHVDVKTTDGYLLRLFAIGFTKRRPTQVKKTTYAQTAQVRELRKKMFEIITREATSCDLKELVQKFVPEAIGREIEKASRSIYPLQNVYIRKAKILKAPKFDVSKLLELHGDSTDESGTRVTKDFKEP 250          

HSP 2 Score: 25.409 bits (54), Expect = 2.056e-58
Identity = 8/15 (53.33%), Postives = 14/15 (93.33%), Query Frame = -1
Query:  695 YRKIRLRAEDVQGKN 739
            +RKI+LR +++QG+N
Sbjct:   81 FRKIKLRVDEIQGRN 95          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_POSPM (40S ribosomal protein S1 OS=Postia placenta (strain ATCC 44394 / Madison 698-R) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.556e-58
Identity = 105/157 (66.88%), Postives = 128/157 (81.53%), Query Frame = -3
Query:  231 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEP 701
            + CLTNF GM F++DKLRSLVRKW TLIEA+VDVKTTD Y LR+F IGFTKR P QV++T YAQ+SQIRQIR+KM EIM  +A+SCDLK LV+KFI E IGREIEKA   IYPLQNVF+ K KILKAPKFD+ KL+E+HG+ +++ G ++ +   EP
Sbjct:   94 KNCLTNFHGMSFSSDKLRSLVRKWQTLIEAHVDVKTTDGYLLRLFAIGFTKRRPTQVRKTTYAQSSQIRQIRQKMFEIMTREASSCDLKELVQKFIPEAIGREIEKAARGIYPLQNVFVHKAKILKAPKFDMSKLLELHGESTDETGTRVVKDFKEP 250          

HSP 2 Score: 26.5646 bits (57), Expect = 4.556e-58
Identity = 10/15 (66.67%), Postives = 14/15 (93.33%), Query Frame = -1
Query:  695 YRKIRLRAEDVQGKN 739
            +RKI+LR ++VQGKN
Sbjct:   81 FRKIKLRIDEVQGKN 95          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_OSTLU (40S ribosomal protein S3a OS=Ostreococcus lucimarinus (strain CCE9901) GN=OSTLU_28528 PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.786e-57
Identity = 117/182 (64.29%), Postives = 138/182 (75.82%), Query Frame = -3
Query:  222 LQEDQTKS*RCPREEC--------LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPE 740
            L  D+ +S R  + +C        LTNF GMDFTTDK+RSLVRKW +LIE +VDVKTTD YTLR+FCIGFTKR  +Q KRTCYAQ++QIR+IR KM EI+  +  +CDLK LV KFI E+IG+EIEK+   IYPLQNV+IRKVKILKAPKFDL KLMEVHGDYS E VG  + RP +E   E
Sbjct:   73 LNNDEDQSFRKMKLKCEDVQGKNVLTNFAGMDFTTDKIRSLVRKWFSLIECFVDVKTTDGYTLRVFCIGFTKRRMDQAKRTCYAQSAQIRKIRAKMVEIITRECTTCDLKELVLKFIPEVIGKEIEKSCAGIYPLQNVYIRKVKILKAPKFDLTKLMEVHGDYSGEAVGEAVARPVEEKAEE 254          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_TORRU (40S ribosomal protein S3a OS=Tortula ruralis GN=RPS3A PE=2 SV=3)

HSP 1 Score: 209.149 bits (531), Expect = 2.918e-57
Identity = 106/148 (71.62%), Postives = 125/148 (84.46%), Query Frame = -3
Query:  252 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEK-ATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKM 692
            LTNFWGMDFTTDKLRSLVRKW +LI+A+VDVKTTDNY +R+FCI FTK+ PN   R  YAQ+SQI  IRRKMREIM+ +A +CDLK LV KFI E+IG+EI++  +  IYPLQ+ FIRKVKILKAPKFDL KLMEVHGDY+E+VG K+
Sbjct:   96 LTNFWGMDFTTDKLRSLVRKWQSLIQAHVDVKTTDNYQIRIFCIAFTKKRPNHT-RNFYAQSSQI-AIRRKMREIMVKEAQTCDLKELVAKFIPEVIGKEIDEWRSQGIYPLQSTFIRKVKILKAPKFDLMKLMEVHGDYNEEVGAKI 241          

HSP 2 Score: 32.7278 bits (73), Expect = 2.918e-57
Identity = 14/16 (87.50%), Postives = 16/16 (100.00%), Query Frame = -1
Query:  692 YRKIRLRAEDVQGKNV 739
            +RKI+LRAEDVQGKNV
Sbjct:   80 FRKIKLRAEDVQGKNV 95          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_PYRTR (40S ribosomal protein S1 OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP) GN=rps1 PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 5.396e-56
Identity = 108/161 (67.08%), Postives = 127/161 (78.88%), Query Frame = -3
Query:  222 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPE 701
            + CLTNF G+DFT+DKLRSLVRKW TLIEA V VKTTD+Y LR+FCI FTKR PNQVK+T YAQ+SQIR IR+KM EIM   A+SC L  L +K I E+IGREIEKAT  IYPLQNV +RKVK+LKAPKFDLG L+ +HG+ S +D G K+ER   E + E
Sbjct:   93 KNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVVVKTTDDYLLRLFCIAFTKRRPNQVKKTTYAQSSQIRAIRKKMVEIMARDASSCTLAQLTQKLIPEVIGREIEKATQGIYPLQNVHVRKVKLLKAPKFDLGALLGLHGESSQDDSGQKVEREFKETVLE 253          

HSP 2 Score: 26.5646 bits (57), Expect = 5.396e-56
Identity = 9/15 (60.00%), Postives = 14/15 (93.33%), Query Frame = -1
Query:  695 YRKIRLRAEDVQGKN 739
            +RK++LR ++VQGKN
Sbjct:   80 FRKVKLRVDEVQGKN 94          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_ASPCL (40S ribosomal protein S1 OS=Aspergillus clavatus GN=rps1 PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 4.501e-55
Identity = 106/162 (65.43%), Postives = 127/162 (78.40%), Query Frame = -3
Query:  219 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERPADEPIPEA 701
            + CLTNF G+DFTTDKLRSLVRKW +LIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+KM EIM  +AASC L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+  ++D G K+ER   E + E+
Sbjct:   94 KNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMTEIMQREAASCSLAQLTHKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESTTDDKGQKVEREFKEQVLES 255          

HSP 2 Score: 26.1794 bits (56), Expect = 4.501e-55
Identity = 8/15 (53.33%), Postives = 14/15 (93.33%), Query Frame = -1
Query:  695 YRKIRLRAEDVQGKN 739
            +RK++LR +++QGKN
Sbjct:   81 FRKVKLRVDEIQGKN 95          
The following BLAST results are available for this feature:
BLAST of CX296740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
RS3A_CHLRE2.296e-6676.3240S ribosomal protein S3a OS=Chlamydomonas reinhar... [more]
RS3A2_VITVI4.260e-6587.3140S ribosomal protein S3a-2 OS=Vitis vinifera GN=G... [more]
RS3A_LENED6.534e-6067.5240S ribosomal protein S1 OS=Lentinula edodes GN=RP... [more]
RS3A_LACBS4.185e-5965.6140S ribosomal protein S1 OS=Laccaria bicolor (stra... [more]
RS3A_COPC72.056e-5867.1040S ribosomal protein S1 OS=Coprinopsis cinerea (s... [more]
RS3A_POSPM4.556e-5866.8840S ribosomal protein S1 OS=Postia placenta (strai... [more]
RS3A_OSTLU1.786e-5764.2940S ribosomal protein S3a OS=Ostreococcus lucimari... [more]
RS3A_TORRU2.918e-5771.6240S ribosomal protein S3a OS=Tortula ruralis GN=RP... [more]
RS3A_PYRTR5.396e-5667.0840S ribosomal protein S1 OS=Pyrenophora tritici-re... [more]
RS3A_ASPCL4.501e-5565.4340S ribosomal protein S1 OS=Aspergillus clavatus G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05802C06SK FerrChloL1 Citrus clementina cDNA clone C05802C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296740 ID=CX296740; Name=CX296740; organism=Citrus clementina; type=EST; length=757bp
CCGAATTCGGCACGAGGCTGGAATAAAGAATAAGGTAATCATGTTCATAC
CACAGAAACCGCTGCAGCCATCTCAAATATCAGCTAGAATAAAATATGTA
AACTCAAAACAAATTTGAGTTCATCACAAACAAAACTGCCCAAAAATTAC
TAGATCTGATTGGTTATAAAGACAAACTACAAAAATTTCTTTATTCAAGC
TCCAATCACTTCAGTTGGTGCTTCAGGAATGGGCTCATCAGCTGGCCTTT
CCATCTTTACACCAACATCCTCAGAGTAATCACCATGAACCTCCATCAAC
TTTCCAAGATCAAACTTAGGAGCTTTCAAGATCTTCACTTTGCGAATGAA
AACATTTTGTAAGGGGTATATGCTTAAGGTTGCCTTCTCAATCTCTCTTC
CAATTATTTCAGCAATGAACTTTTCGACCAAGCCCTTAAGATCACAGGAT
GCTGCCTGAGCAATCATGATCTCCCTCATCTTGCGGCGAATCTGTCTAAT
CTGGCTGGCCTGTGCGTAGCAAGTCCTCTTAACCTGATTTGGAAGTCTCT
TGGTGAATCCAATGCAGAACATCCTCAATGTGTAGTTATCAGTGGTCTTG
ACATCCACGTAAGCTTCAATCAACGTATGCCACTTCCTAACCAAGGACCT
CAGCTTGTCTGTAGTGAAATCCATGCCCCAGAAGTTTGTCAAACATTCTT
CCCTTGGACATCTTCAGCTCTTAGTCTGATCTTCCTGTAGCATGCTCTTC
TTCATAT
back to top