CX296740
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_CHLRE (40S ribosomal protein S3a OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_168484 PE=3 SV=1) HSP 1 Score: 243.817 bits (621), Expect = 2.296e-66 Identity = 116/152 (76.32%), Postives = 132/152 (86.84%), Query Frame = -3 Query: 240 CLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPA 695 CLTNFWGMDFTTDKLRSLVRKW TLIEA+VDVKTTD YTLR+FCI FTK+ Q+KRTCYAQ++QIRQIR+KM EI+ +A SCDLK LV KFI E IG++IEK+ IYPLQN FIRKVK+LKAPKFD+ KLMEVHGDYSE+VG K+ERPA Sbjct: 96 CLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDGYTLRVFCISFTKKRQGQIKRTCYAQSAQIRQIRKKMMEIITREATSCDLKELVAKFIPESIGKDIEKSCQGIYPLQNTFIRKVKVLKAPKFDITKLMEVHGDYSEEVGAKIERPA 247 HSP 2 Score: 28.4906 bits (62), Expect = 2.296e-66 Identity = 11/15 (73.33%), Postives = 14/15 (93.33%), Query Frame = -1 Query: 695 YRKIRLRAEDVQGKN 739 +RK+RLR EDVQG+N Sbjct: 81 FRKMRLRVEDVQGRN 95
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A2_VITVI (40S ribosomal protein S3a-2 OS=Vitis vinifera GN=GSVIVT00031140001 PE=3 SV=1) HSP 1 Score: 232.646 bits (592), Expect = 4.260e-65 Identity = 117/134 (87.31%), Postives = 122/134 (91.04%), Query Frame = -3 Query: 291 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLME 692 LTNFWGMDFTTDKLRSLVRKW TLIEA+VDVKTTDNYTLRMFCI FTK+ NQ K+T YAQ+SQIRQIRRKMREIM QAASCDLK LV KFI E+IGREIEKAT SIYPLQNVFIRKVKILKAPKFDLGKLME Sbjct: 97 LTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIAFTKKRQNQNKKTSYAQSSQIRQIRRKMREIMTTQAASCDLKELVRKFIPEMIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLME 230 HSP 2 Score: 35.4242 bits (80), Expect = 4.260e-65 Identity = 16/16 (100.00%), Postives = 16/16 (100.00%), Query Frame = -1 Query: 692 YRKIRLRAEDVQGKNV 739 YRKIRLRAEDVQGKNV Sbjct: 81 YRKIRLRAEDVQGKNV 96
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_LENED (40S ribosomal protein S1 OS=Lentinula edodes GN=RPS1 PE=2 SV=1) HSP 1 Score: 223.787 bits (569), Expect = 6.534e-60 Identity = 106/157 (67.52%), Postives = 131/157 (83.44%), Query Frame = -3 Query: 231 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEP 701 + CLTNF GMDFT+DKLRSLVRKW TLIEA+VDVKTTD Y LR+F IGFTKR P QV++T YAQ+SQ+R+IR+KM EIM +A +CDLK LV+KF+ E IGREIEKA+ SIYPLQNV++RK KILKAPKFD+ KLME+HG+ +++ G K+ + EP Sbjct: 94 KNCLTNFHGMDFTSDKLRSLVRKWQTLIEAHVDVKTTDGYLLRLFAIGFTKRRPTQVRKTTYAQSSQVREIRKKMFEIMTREATNCDLKELVQKFVPEAIGREIEKASRSIYPLQNVYVRKAKILKAPKFDVSKLMELHGESTDETGTKIAKDFKEP 250 HSP 2 Score: 26.9498 bits (58), Expect = 6.534e-60 Identity = 10/15 (66.67%), Postives = 14/15 (93.33%), Query Frame = -1 Query: 695 YRKIRLRAEDVQGKN 739 +RKI+LR ++VQGKN Sbjct: 81 FRKIKLRVDEVQGKN 95
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_LACBS (40S ribosomal protein S1 OS=Laccaria bicolor (strain S238N-H82) GN=RPS1 PE=3 SV=2) HSP 1 Score: 221.861 bits (564), Expect = 4.185e-59 Identity = 103/157 (65.61%), Postives = 131/157 (83.44%), Query Frame = -3 Query: 231 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEP 701 + CLTNF GMDFT+DKLRSLVRKW TL+EA+VDVKTTD Y LR+F IGFTKR P+QV++T YAQ+SQ+R+IR+KM EIM +A +CDLK LV+KF+ E IGREIEKA SIYPLQNV++RK KILK+PKFD+ KL+E+HGD +++ G ++ + EP Sbjct: 94 KNCLTNFHGMDFTSDKLRSLVRKWQTLVEAHVDVKTTDGYLLRLFAIGFTKRRPSQVRKTTYAQSSQVREIRKKMFEIMTREATNCDLKELVQKFVPEAIGREIEKAARSIYPLQNVYVRKAKILKSPKFDMSKLLELHGDSTDETGTRIAKDFKEP 250 HSP 2 Score: 26.1794 bits (56), Expect = 4.185e-59 Identity = 9/15 (60.00%), Postives = 14/15 (93.33%), Query Frame = -1 Query: 695 YRKIRLRAEDVQGKN 739 +RKI+LR +++QGKN Sbjct: 81 FRKIKLRIDEIQGKN 95
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_COPC7 (40S ribosomal protein S1 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=RPS1 PE=3 SV=1) HSP 1 Score: 220.32 bits (560), Expect = 2.056e-58 Identity = 104/155 (67.10%), Postives = 129/155 (83.23%), Query Frame = -3 Query: 231 CLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEP 695 CLTNF GMDFT+DKLRSLVRKW TL+EA+VDVKTTD Y LR+F IGFTKR P QVK+T YAQ +Q+R++R+KM EI+ +A SCDLK LV+KF+ E IGREIEKA+ SIYPLQNV+IRK KILKAPKFD+ KL+E+HGD +++ G ++ + EP Sbjct: 96 CLTNFHGMDFTSDKLRSLVRKWQTLVEAHVDVKTTDGYLLRLFAIGFTKRRPTQVKKTTYAQTAQVRELRKKMFEIITREATSCDLKELVQKFVPEAIGREIEKASRSIYPLQNVYIRKAKILKAPKFDVSKLLELHGDSTDESGTRVTKDFKEP 250 HSP 2 Score: 25.409 bits (54), Expect = 2.056e-58 Identity = 8/15 (53.33%), Postives = 14/15 (93.33%), Query Frame = -1 Query: 695 YRKIRLRAEDVQGKN 739 +RKI+LR +++QG+N Sbjct: 81 FRKIKLRVDEIQGRN 95
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_POSPM (40S ribosomal protein S1 OS=Postia placenta (strain ATCC 44394 / Madison 698-R) GN=RPS1 PE=3 SV=1) HSP 1 Score: 218.009 bits (554), Expect = 4.556e-58 Identity = 105/157 (66.88%), Postives = 128/157 (81.53%), Query Frame = -3 Query: 231 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEP 701 + CLTNF GM F++DKLRSLVRKW TLIEA+VDVKTTD Y LR+F IGFTKR P QV++T YAQ+SQIRQIR+KM EIM +A+SCDLK LV+KFI E IGREIEKA IYPLQNVF+ K KILKAPKFD+ KL+E+HG+ +++ G ++ + EP Sbjct: 94 KNCLTNFHGMSFSSDKLRSLVRKWQTLIEAHVDVKTTDGYLLRLFAIGFTKRRPTQVRKTTYAQSSQIRQIRQKMFEIMTREASSCDLKELVQKFIPEAIGREIEKAARGIYPLQNVFVHKAKILKAPKFDMSKLLELHGESTDETGTRVVKDFKEP 250 HSP 2 Score: 26.5646 bits (57), Expect = 4.556e-58 Identity = 10/15 (66.67%), Postives = 14/15 (93.33%), Query Frame = -1 Query: 695 YRKIRLRAEDVQGKN 739 +RKI+LR ++VQGKN Sbjct: 81 FRKIKLRIDEVQGKN 95
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_OSTLU (40S ribosomal protein S3a OS=Ostreococcus lucimarinus (strain CCE9901) GN=OSTLU_28528 PE=3 SV=1) HSP 1 Score: 222.631 bits (566), Expect = 1.786e-57 Identity = 117/182 (64.29%), Postives = 138/182 (75.82%), Query Frame = -3 Query: 222 LQEDQTKS*RCPREEC--------LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPE 740 L D+ +S R + +C LTNF GMDFTTDK+RSLVRKW +LIE +VDVKTTD YTLR+FCIGFTKR +Q KRTCYAQ++QIR+IR KM EI+ + +CDLK LV KFI E+IG+EIEK+ IYPLQNV+IRKVKILKAPKFDL KLMEVHGDYS E VG + RP +E E Sbjct: 73 LNNDEDQSFRKMKLKCEDVQGKNVLTNFAGMDFTTDKIRSLVRKWFSLIECFVDVKTTDGYTLRVFCIGFTKRRMDQAKRTCYAQSAQIRKIRAKMVEIITRECTTCDLKELVLKFIPEVIGKEIEKSCAGIYPLQNVYIRKVKILKAPKFDLTKLMEVHGDYSGEAVGEAVARPVEEKAEE 254
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_TORRU (40S ribosomal protein S3a OS=Tortula ruralis GN=RPS3A PE=2 SV=3) HSP 1 Score: 209.149 bits (531), Expect = 2.918e-57 Identity = 106/148 (71.62%), Postives = 125/148 (84.46%), Query Frame = -3 Query: 252 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEK-ATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKM 692 LTNFWGMDFTTDKLRSLVRKW +LI+A+VDVKTTDNY +R+FCI FTK+ PN R YAQ+SQI IRRKMREIM+ +A +CDLK LV KFI E+IG+EI++ + IYPLQ+ FIRKVKILKAPKFDL KLMEVHGDY+E+VG K+ Sbjct: 96 LTNFWGMDFTTDKLRSLVRKWQSLIQAHVDVKTTDNYQIRIFCIAFTKKRPNHT-RNFYAQSSQI-AIRRKMREIMVKEAQTCDLKELVAKFIPEVIGKEIDEWRSQGIYPLQSTFIRKVKILKAPKFDLMKLMEVHGDYNEEVGAKI 241 HSP 2 Score: 32.7278 bits (73), Expect = 2.918e-57 Identity = 14/16 (87.50%), Postives = 16/16 (100.00%), Query Frame = -1 Query: 692 YRKIRLRAEDVQGKNV 739 +RKI+LRAEDVQGKNV Sbjct: 80 FRKIKLRAEDVQGKNV 95
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_PYRTR (40S ribosomal protein S1 OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP) GN=rps1 PE=3 SV=1) HSP 1 Score: 211.075 bits (536), Expect = 5.396e-56 Identity = 108/161 (67.08%), Postives = 127/161 (78.88%), Query Frame = -3 Query: 222 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPE 701 + CLTNF G+DFT+DKLRSLVRKW TLIEA V VKTTD+Y LR+FCI FTKR PNQVK+T YAQ+SQIR IR+KM EIM A+SC L L +K I E+IGREIEKAT IYPLQNV +RKVK+LKAPKFDLG L+ +HG+ S +D G K+ER E + E Sbjct: 93 KNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVVVKTTDDYLLRLFCIAFTKRRPNQVKKTTYAQSSQIRAIRKKMVEIMARDASSCTLAQLTQKLIPEVIGREIEKATQGIYPLQNVHVRKVKLLKAPKFDLGALLGLHGESSQDDSGQKVEREFKETVLE 253 HSP 2 Score: 26.5646 bits (57), Expect = 5.396e-56 Identity = 9/15 (60.00%), Postives = 14/15 (93.33%), Query Frame = -1 Query: 695 YRKIRLRAEDVQGKN 739 +RK++LR ++VQGKN Sbjct: 80 FRKVKLRVDEVQGKN 94
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_ASPCL (40S ribosomal protein S1 OS=Aspergillus clavatus GN=rps1 PE=3 SV=1) HSP 1 Score: 208.379 bits (529), Expect = 4.501e-55 Identity = 106/162 (65.43%), Postives = 127/162 (78.40%), Query Frame = -3 Query: 219 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERPADEPIPEA 701 + CLTNF G+DFTTDKLRSLVRKW +LIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+KM EIM +AASC L L K I E+IGREIEKAT IYPLQNV IRKVK+LKAPKFDLG L+ +HG+ ++D G K+ER E + E+ Sbjct: 94 KNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMTEIMQREAASCSLAQLTHKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESTTDDKGQKVEREFKEQVLES 255 HSP 2 Score: 26.1794 bits (56), Expect = 4.501e-55 Identity = 8/15 (53.33%), Postives = 14/15 (93.33%), Query Frame = -1 Query: 695 YRKIRLRAEDVQGKN 739 +RK++LR +++QGKN Sbjct: 81 FRKVKLRVDEIQGKN 95 The following BLAST results are available for this feature:
BLAST of CX296740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 166
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296740 ID=CX296740; Name=CX296740; organism=Citrus clementina; type=EST; length=757bpback to top |