CX296740

Overview
NameCX296740
Unique NameCX296740
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig928 contig Ccv1_Contig928:282..1039. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_LYSTE (40S ribosomal protein S3a OS=Lysiphlebus testaceipes PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 4.639e-45
Identity = 89/165 (53.94%), Postives = 117/165 (70.91%), Query Frame = -3
Query:  222 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE------DVGVKMERPA--DEPIPE 692
            L NF GMD TTDKLRS+V+KW TLIEA+VDVKTTD Y LR+FCIGFT++     ++T YAQ SQ+R IRRKM  I+  +   CDLKG+V K + + I ++IEKA   IYPL +V+IRKVK+LK P+F+L KL+E+HGD         + G K++RP   + P+ E
Sbjct:  100 LCNFHGMDLTTDKLRSMVKKWQTLIEAHVDVKTTDGYLLRIFCIGFTQKDQMSTRKTSYAQHSQVRNIRRKMVSIVTDEITKCDLKGVVTKLVPDAIAKDIEKACQGIYPLHDVYIRKVKVLKKPRFELSKLLELHGDGGSKTGEVGETGSKVDRPEGYEPPVQE 264          

HSP 2 Score: 22.3274 bits (46), Expect = 4.639e-45
Identity = 9/16 (56.25%), Postives = 12/16 (75.00%), Query Frame = -1
Query:  692 YRKIRLRAEDVQGKNV 739
            +RK RL  EDVQ ++V
Sbjct:   84 FRKFRLIVEDVQNRSV 99          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_VANPO (40S ribosomal protein S1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 4.642e-45
Identity = 91/154 (59.09%), Postives = 111/154 (72.08%), Query Frame = -3
Query:  234 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADE 692
            LTNF GMDFTTDK+RS+VRKW TLIEA V VKT+D+Y LR+F I FT++  NQVKRT YAQ+S IR IR+ + EI+  +     L  L  K I E+I +EIE AT  I+PLQNV IRKVK+LK PKFDLG LM +HG+ S E+ G K+    DE
Sbjct:   97 LTNFHGMDFTTDKVRSMVRKWQTLIEANVTVKTSDDYVLRVFAIAFTRKQSNQVKRTSYAQSSHIRAIRKVISEILTREVQGSTLAQLTSKLIPEVINKEIENATKDIFPLQNVHIRKVKLLKQPKFDLGSLMALHGEGSGEEKGKKVSGFKDE 250          

HSP 2 Score: 27.335 bits (59), Expect = 4.642e-45
Identity = 10/16 (62.50%), Postives = 15/16 (93.75%), Query Frame = -1
Query:  692 YRKIRLRAEDVQGKNV 739
            +RKI+LR ++VQGKN+
Sbjct:   81 FRKIKLRVDEVQGKNL 96          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_BIPLU (40S ribosomal protein S3a OS=Biphyllus lunatus PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 6.046e-45
Identity = 86/167 (51.50%), Postives = 118/167 (70.66%), Query Frame = -3
Query:  219 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE-------DVGVKMERPA--DEPIPEA 692
            LTNF GMD TTDKLRS+V+KW +LIEA  DVKTTD Y LR+FCIGFT +     ++TCYAQ +Q+R IR+KM EI+    +  DLK +V K + + I ++IEKA+  IYPL +V+IRKVK+LK P+F+L KL+E+HGD  +       + G K+++P   + P+ EA
Sbjct:  100 LTNFHGMDLTTDKLRSMVKKWQSLIEASADVKTTDGYLLRVFCIGFTNKDQLSQRKTCYAQHTQVRSIRKKMVEIITRDISGSDLKEVVNKLLPDSIAKDIEKASQGIYPLHDVYIRKVKVLKKPRFELSKLLELHGDSGKGGSGEPGEAGSKVDKPEGYEPPVQEA 266          

HSP 2 Score: 28.1054 bits (61), Expect = 6.046e-45
Identity = 12/16 (75.00%), Postives = 14/16 (87.50%), Query Frame = -1
Query:  692 YRKIRLRAEDVQGKNV 739
            +RK RL AEDVQG+NV
Sbjct:   84 FRKFRLIAEDVQGRNV 99          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_PLAF7 (40S ribosomal protein S3a OS=Plasmodium falciparum (isolate 3D7) GN=MAL3P7.35 PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.783e-45
Identity = 91/146 (62.33%), Postives = 109/146 (74.66%), Query Frame = -3
Query:  261 ECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 698
            +C T+F G+  T DKL SL+RK +TLIE + DVKT DNY LRMFCI FTK+  NQ K TCYAQ SQI++IR+KM +IM A+A+   LK LV+KFI E IG+EIEK    IYPLQNV IRKVKILK PK D+ KLME+H D  E+ G
Sbjct:   95 DCYTDFCGLSITRDKLCSLIRKGYTLIEGHTDVKTLDNYHLRMFCIAFTKKRQNQTKSTCYAQTSQIKKIRKKMVDIMTAEASKVLLKDLVKKFIPESIGKEIEKQCKKIYPLQNVLIRKVKILKRPKLDISKLMELHTDPKEESG 240          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_TRIAD (40S ribosomal protein S3a OS=Trichoplax adhaerens GN=TRIADDRAFT_36460 PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.339e-44
Identity = 86/157 (54.78%), Postives = 114/157 (72.61%), Query Frame = -3
Query:  231 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---YSEDVGVKMERPADEP 692
            LTNF GM  T+DKL+SLV+KW TLIEA++D KTTD Y LR F IGFTK+ PNQ+K+T YA+ SQ R IR+KM +I+  + ++ DLK +V + I + IG++IEK+  SIYPL +V+IRKVK+LK PK D  KL+E+HG+    S D G  + R   EP
Sbjct:   96 LTNFHGMSMTSDKLKSLVKKWQTLIEAHIDAKTTDGYLLRFFAIGFTKKRPNQIKKTAYAKTSQCRSIRKKMTDIITREVSAIDLKEVVNRLIPDSIGKDIEKSCQSIYPLHDVYIRKVKVLKKPKLDTAKLLELHGEGVASSGDAGSAVRRDGYEP 252          

HSP 2 Score: 23.0978 bits (48), Expect = 1.339e-44
Identity = 10/16 (62.50%), Postives = 13/16 (81.25%), Query Frame = -1
Query:  692 YRKIRLRAEDVQGKNV 739
            +RK RL AE+V GK+V
Sbjct:   80 FRKFRLIAEEVLGKSV 95          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_LACTC (40S ribosomal protein S1 OS=Lachancea thermotolerans (strain CBS 6340) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.339e-44
Identity = 88/148 (59.46%), Postives = 107/148 (72.30%), Query Frame = -3
Query:  252 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 692
            LTNF G+D TTDK RS+VRKW TLIEA V VKT D Y LR+F I FT+R PNQVK+ CYAQ+S IR IR+ + EI+  +  +  L  L  K I E+I +EIE AT  I+PLQNV IRKVK+LK PKFDLG LM +HG+ S E+ G K+
Sbjct:   97 LTNFHGLDLTTDKYRSMVRKWQTLIEANVTVKTADEYVLRVFAIAFTRRQPNQVKKACYAQSSHIRAIRKVISEILTREVQNSTLAQLTSKLIPEVINKEIENATKDIFPLQNVHIRKVKLLKQPKFDLGALMTLHGEASGEEKGKKV 244          

HSP 2 Score: 26.9498 bits (58), Expect = 1.339e-44
Identity = 9/16 (56.25%), Postives = 15/16 (93.75%), Query Frame = -1
Query:  692 YRKIRLRAEDVQGKNV 739
            +RK++LR ++VQGKN+
Sbjct:   81 FRKVKLRVDEVQGKNL 96          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_PLAYO (40S ribosomal protein S3a OS=Plasmodium yoelii yoelii GN=PY02291 PE=3 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 1.734e-44
Identity = 90/146 (61.64%), Postives = 108/146 (73.97%), Query Frame = -3
Query:  261 ECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 698
            +C T+F G+  T DKL SL+RK +TLIE   DVKT DNY LRMFCI FTK+ PNQ K TCYAQ SQI++IR+KM +IM A+A+   LK LV+K I E IG+E+EK    I+PLQNV IRKVKILK PK D+ KLME+H D  ED G
Sbjct:   95 DCYTDFCGLSITRDKLCSLIRKGYTLIEGCTDVKTIDNYHLRMFCIAFTKKRPNQTKTTCYAQTSQIKKIRKKMVDIMHAEASKVLLKDLVKKIIPESIGKEVEKQCKKIFPLQNVLIRKVKILKRPKLDISKLMELHSDPKEDSG 240          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_BRUMA (40S ribosomal protein S3a OS=Brugia malayi GN=Bm1_27225 PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.745e-44
Identity = 91/160 (56.88%), Postives = 115/160 (71.88%), Query Frame = -3
Query:  225 CLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---YSEDVGVKMERPADEPIP 695
            CLTNF GM  T DKL S+V+KWHTLIEA V VKT+D Y LR+FCIGFTK+   Q+K+T YA++S+IRQIR KM E M  +    DLK +  K + + IG++IEKA   IYPLQ+V IRKVKILK PKF++G+LME+H D   ++   G K+ERP D   P
Sbjct:   93 CLTNFHGMRLTRDKLCSIVKKWHTLIEANVAVKTSDGYLLRLFCIGFTKKNARQLKKTSYAKSSKIRQIRAKMVEYMQKEVQGSDLKDVCHKLVPDSIGKDIEKACSYIYPLQDVCIRKVKILKKPKFEIGRLMEMHTDVSTFTSAEGEKIERPDDYEPP 252          

HSP 2 Score: 23.0978 bits (48), Expect = 1.745e-44
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = -1
Query:  698 YRKIRLRAEDVQGK 739
            +RK+RL  EDVQG+
Sbjct:   78 FRKMRLICEDVQGR 91          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_ASHGO (40S ribosomal protein S1 OS=Ashbya gossypii GN=RPS1 PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.745e-44
Identity = 88/148 (59.46%), Postives = 109/148 (73.65%), Query Frame = -3
Query:  252 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 692
            LTNF G+DFTTDKLRS+VRKW TLIEA V VKT D+Y LR+F I FT+R  NQ+K+T YAQ+S IR IR+ + EI+  +  +  L  L  K I E+I +EIE AT  I+PLQNV IRKVK+LK PKFDLG LM +HG+ S E+ G K+
Sbjct:   97 LTNFHGLDFTTDKLRSMVRKWQTLIEANVTVKTADDYVLRVFAIAFTRRQSNQIKKTSYAQSSHIRAIRKVISEILTREVQNATLAQLTSKLIPEVINKEIENATKDIFPLQNVHIRKVKLLKQPKFDLGALMTLHGESSGEEKGKKV 244          

HSP 2 Score: 26.9498 bits (58), Expect = 1.745e-44
Identity = 9/16 (56.25%), Postives = 15/16 (93.75%), Query Frame = -1
Query:  692 YRKIRLRAEDVQGKNV 739
            +RK++LR ++VQGKN+
Sbjct:   81 FRKVKLRVDEVQGKNL 96          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_CANGA (40S ribosomal protein S1 OS=Candida glabrata GN=RPS1 PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 2.274e-44
Identity = 88/154 (57.14%), Postives = 110/154 (71.43%), Query Frame = -3
Query:  234 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADE 692
            LTNF GMDFT DKLRS+VRKW TLIEA V VKT+D Y +R+F I FT++  NQVKRT YAQ+S IR IR+ + +I+  + ++  L     K I E+I +EIE AT  I+PLQNV IRKVK+LK PKFDLG LM +HG+ S E+ G K+    DE
Sbjct:   97 LTNFHGMDFTADKLRSMVRKWQTLIEANVTVKTSDEYIIRVFAIAFTRKQSNQVKRTAYAQSSHIRAIRKVISDILTREVSNSTLAQFTSKLIPEVINKEIENATKDIFPLQNVHIRKVKLLKQPKFDLGSLMALHGEGSAEEKGKKVSGFKDE 250          

HSP 2 Score: 28.4906 bits (62), Expect = 2.274e-44
Identity = 10/16 (62.50%), Postives = 15/16 (93.75%), Query Frame = -1
Query:  692 YRKIRLRAEDVQGKNV 739
            +RK++LR +DVQGKN+
Sbjct:   81 FRKVKLRVDDVQGKNL 96          
The following BLAST results are available for this feature:
BLAST of CX296740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
RS3A_LYSTE4.639e-4553.9440S ribosomal protein S3a OS=Lysiphlebus testaceip... [more]
RS3A_VANPO4.642e-4559.0940S ribosomal protein S1 OS=Vanderwaltozyma polysp... [more]
RS3A_BIPLU6.046e-4551.5040S ribosomal protein S3a OS=Biphyllus lunatus PE=... [more]
RS3A_PLAF77.783e-4562.3340S ribosomal protein S3a OS=Plasmodium falciparum... [more]
RS3A_TRIAD1.339e-4454.7840S ribosomal protein S3a OS=Trichoplax adhaerens ... [more]
RS3A_LACTC1.339e-4459.4640S ribosomal protein S1 OS=Lachancea thermotolera... [more]
RS3A_PLAYO1.734e-4461.6440S ribosomal protein S3a OS=Plasmodium yoelii yoe... [more]
RS3A_BRUMA1.745e-4456.8840S ribosomal protein S3a OS=Brugia malayi GN=Bm1_... [more]
RS3A_ASHGO1.745e-4459.4640S ribosomal protein S1 OS=Ashbya gossypii GN=RPS... [more]
RS3A_CANGA2.274e-4457.1440S ribosomal protein S1 OS=Candida glabrata GN=RP... [more]

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Properties
Property NameValue
Genbank descriptionC05802C06SK FerrChloL1 Citrus clementina cDNA clone C05802C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296740 ID=CX296740; Name=CX296740; organism=Citrus clementina; type=EST; length=757bp
CCGAATTCGGCACGAGGCTGGAATAAAGAATAAGGTAATCATGTTCATAC
CACAGAAACCGCTGCAGCCATCTCAAATATCAGCTAGAATAAAATATGTA
AACTCAAAACAAATTTGAGTTCATCACAAACAAAACTGCCCAAAAATTAC
TAGATCTGATTGGTTATAAAGACAAACTACAAAAATTTCTTTATTCAAGC
TCCAATCACTTCAGTTGGTGCTTCAGGAATGGGCTCATCAGCTGGCCTTT
CCATCTTTACACCAACATCCTCAGAGTAATCACCATGAACCTCCATCAAC
TTTCCAAGATCAAACTTAGGAGCTTTCAAGATCTTCACTTTGCGAATGAA
AACATTTTGTAAGGGGTATATGCTTAAGGTTGCCTTCTCAATCTCTCTTC
CAATTATTTCAGCAATGAACTTTTCGACCAAGCCCTTAAGATCACAGGAT
GCTGCCTGAGCAATCATGATCTCCCTCATCTTGCGGCGAATCTGTCTAAT
CTGGCTGGCCTGTGCGTAGCAAGTCCTCTTAACCTGATTTGGAAGTCTCT
TGGTGAATCCAATGCAGAACATCCTCAATGTGTAGTTATCAGTGGTCTTG
ACATCCACGTAAGCTTCAATCAACGTATGCCACTTCCTAACCAAGGACCT
CAGCTTGTCTGTAGTGAAATCCATGCCCCAGAAGTTTGTCAAACATTCTT
CCCTTGGACATCTTCAGCTCTTAGTCTGATCTTCCTGTAGCATGCTCTTC
TTCATAT
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