CX296740

Overview
NameCX296740
Unique NameCX296740
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_APLCA (40S ribosomal protein S3a OS=Aplysia californica GN=RPS3A PE=3 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 2.961e-44
Identity = 85/140 (60.71%), Postives = 108/140 (77.14%), Query Frame = -3
Query:  273 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS 692
            LTNF GM  T DKL S+V+KW TLIEA VDVKTTD Y LR+F IGFTK+  NQVK+TCYAQ +Q++ IR+KM EI+  + +S D+K +V K I + IG++IEK+   IYPL +V I KVK+LK PKFD+GKLME+HG+ S
Sbjct:   97 LTNFSGMSLTRDKLCSMVKKWQTLIEANVDVKTTDGYLLRVFAIGFTKKRNNQVKKTCYAQHAQVKAIRKKMVEIVSREVSSNDMKEVVNKLIPDSIGKDIEKSCQGIYPLHDVLIHKVKVLKKPKFDVGKLMELHGEGS 236          

HSP 2 Score: 25.409 bits (54), Expect = 2.961e-44
Identity = 10/16 (62.50%), Postives = 14/16 (87.50%), Query Frame = -1
Query:  692 YRKIRLRAEDVQGKNV 739
            +RK +L AE+VQG+NV
Sbjct:   81 FRKFKLIAEEVQGRNV 96          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A2_YEAST (40S ribosomal protein S1-B OS=Saccharomyces cerevisiae GN=RPS1B PE=1 SV=3)

HSP 1 Score: 170.244 bits (430), Expect = 6.557e-44
Identity = 88/154 (57.14%), Postives = 111/154 (72.08%), Query Frame = -3
Query:  234 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADE 692
            LTNF GMDFTTDKLRS+VRKW TLIEA V VKT+D+Y LR+F I FT++  NQVKR  YAQ+S IR IR+ + EI+  +  +  L  L  K I E+I +EIE AT  I+PLQN+ +RKVK+LK PKFD+G LM +HG+ S E+ G K+    DE
Sbjct:   97 LTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTREVQNSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKVSGFKDE 250          

HSP 2 Score: 26.9498 bits (58), Expect = 6.557e-44
Identity = 9/16 (56.25%), Postives = 15/16 (93.75%), Query Frame = -1
Query:  692 YRKIRLRAEDVQGKNV 739
            +RK++LR ++VQGKN+
Sbjct:   81 FRKVKLRVDEVQGKNL 96          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A2_YEAS7 (40S ribosomal protein S1-B OS=Saccharomyces cerevisiae (strain YJM789) GN=RPS1B PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 6.557e-44
Identity = 88/154 (57.14%), Postives = 111/154 (72.08%), Query Frame = -3
Query:  234 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADE 692
            LTNF GMDFTTDKLRS+VRKW TLIEA V VKT+D+Y LR+F I FT++  NQVKR  YAQ+S IR IR+ + EI+  +  +  L  L  K I E+I +EIE AT  I+PLQN+ +RKVK+LK PKFD+G LM +HG+ S E+ G K+    DE
Sbjct:   97 LTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTREVQNSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKVSGFKDE 250          

HSP 2 Score: 26.9498 bits (58), Expect = 6.557e-44
Identity = 9/16 (56.25%), Postives = 15/16 (93.75%), Query Frame = -1
Query:  692 YRKIRLRAEDVQGKNV 739
            +RK++LR ++VQGKN+
Sbjct:   81 FRKVKLRVDEVQGKNL 96          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A2_YEAS6 (40S ribosomal protein S1-B OS=Saccharomyces cerevisiae (strain AWRI1631) GN=RPS1B PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 6.557e-44
Identity = 88/154 (57.14%), Postives = 111/154 (72.08%), Query Frame = -3
Query:  234 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADE 692
            LTNF GMDFTTDKLRS+VRKW TLIEA V VKT+D+Y LR+F I FT++  NQVKR  YAQ+S IR IR+ + EI+  +  +  L  L  K I E+I +EIE AT  I+PLQN+ +RKVK+LK PKFD+G LM +HG+ S E+ G K+    DE
Sbjct:   97 LTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTREVQNSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKVSGFKDE 250          

HSP 2 Score: 26.9498 bits (58), Expect = 6.557e-44
Identity = 9/16 (56.25%), Postives = 15/16 (93.75%), Query Frame = -1
Query:  692 YRKIRLRAEDVQGKNV 739
            +RK++LR ++VQGKN+
Sbjct:   81 FRKVKLRVDEVQGKNL 96          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A2_YEAS1 (40S ribosomal protein S1-B OS=Saccharomyces cerevisiae (strain RM11-1a) GN=RPS1B PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 6.557e-44
Identity = 88/154 (57.14%), Postives = 111/154 (72.08%), Query Frame = -3
Query:  234 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADE 692
            LTNF GMDFTTDKLRS+VRKW TLIEA V VKT+D+Y LR+F I FT++  NQVKR  YAQ+S IR IR+ + EI+  +  +  L  L  K I E+I +EIE AT  I+PLQN+ +RKVK+LK PKFD+G LM +HG+ S E+ G K+    DE
Sbjct:   97 LTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTREVQNSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKVSGFKDE 250          

HSP 2 Score: 26.9498 bits (58), Expect = 6.557e-44
Identity = 9/16 (56.25%), Postives = 15/16 (93.75%), Query Frame = -1
Query:  692 YRKIRLRAEDVQGKNV 739
            +RK++LR ++VQGKN+
Sbjct:   81 FRKVKLRVDEVQGKNL 96          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_THEAN (40S ribosomal protein S3a OS=Theileria annulata GN=TA17795 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 8.542e-44
Identity = 83/145 (57.24%), Postives = 107/145 (73.79%), Query Frame = -3
Query:  261 CLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 695
            CLT+F G   T DKL SL+RK ++LIEA+ DVKT D Y LRMFC+G+TKR P Q+K TCY ++S++R I +KM  +M  +A++  LK LV+K I E IG+EIEKA  SI+PLQNV +RK+K+LK PKFDL KLME H    E+ G
Sbjct:   96 CLTDFHGTSVTRDKLCSLIRKNYSLIEAFADVKTLDGYNLRMFCVGYTKRRPGQLKSTCYVRSSKVRLIHKKMVAVMTNEASNSTLKELVKKVIPESIGKEIEKACKSIFPLQNVLVRKIKVLKKPKFDLTKLMESHNYSGEEEG 240          

HSP 2 Score: 27.7202 bits (60), Expect = 8.542e-44
Identity = 11/15 (73.33%), Postives = 13/15 (86.67%), Query Frame = -1
Query:  695 YRKIRLRAEDVQGKN 739
            YRKI+L  EDVQG+N
Sbjct:   81 YRKIKLSCEDVQGRN 95          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_MONBE (40S ribosomal protein S3a OS=Monosiga brevicollis GN=34920 PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 8.543e-44
Identity = 90/167 (53.89%), Postives = 119/167 (71.26%), Query Frame = -3
Query:  207 ECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---YSEDVGVKMERPADEPIPEAPTEV 698
            ECLTNF GM  TTDKLRSLV+KW +LIEA+VDVKT D Y LR+F IGFTK+  N  ++TCYAQ++Q R +R KM EIM  + A+CDLK  V K +   IG+EI+K   SI+PLQ+V+IRKVK+LK P+FD+ KL+E+HG+    + D G  + +  +   P+  T V
Sbjct:   94 ECLTNFHGMSLTTDKLRSLVKKWRSLIEAFVDVKTNDGYVLRIFSIGFTKKQANSDRKTCYAQSAQKRALRAKMVEIM-QREATCDLKEFVSKLMPGTIGQEIQKKCQSIFPLQDVYIRKVKVLKKPRFDVSKLLELHGEAGGVTADKGKTVAKSGEFVEPKPQTSV 259          

HSP 2 Score: 21.557 bits (44), Expect = 8.543e-44
Identity = 6/13 (46.15%), Postives = 12/13 (92.31%), Query Frame = -1
Query:  701 YRKIRLRAEDVQG 739
            +RK++L+ E++QG
Sbjct:   80 FRKVKLQVEEIQG 92          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A1_YEAST (40S ribosomal protein S1-A OS=Saccharomyces cerevisiae GN=RPS1A PE=1 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 8.545e-44
Identity = 88/154 (57.14%), Postives = 110/154 (71.43%), Query Frame = -3
Query:  234 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADE 692
            LTNF GMDFTTDKLRS+VRKW TLIEA V VKT+D+Y LR+F I FT++  NQVKR  YAQ+S IR IR+ + EI+  +     L  L  K I E+I +EIE AT  I+PLQN+ +RKVK+LK PKFD+G LM +HG+ S E+ G K+    DE
Sbjct:   97 LTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKVTGFKDE 250          

HSP 2 Score: 27.335 bits (59), Expect = 8.545e-44
Identity = 10/16 (62.50%), Postives = 15/16 (93.75%), Query Frame = -1
Query:  692 YRKIRLRAEDVQGKNV 739
            +RKI+LR ++VQGKN+
Sbjct:   81 FRKIKLRVDEVQGKNL 96          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A1_YEAS7 (40S ribosomal protein S1-A OS=Saccharomyces cerevisiae (strain YJM789) GN=RPS1A PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 8.545e-44
Identity = 88/154 (57.14%), Postives = 110/154 (71.43%), Query Frame = -3
Query:  234 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADE 692
            LTNF GMDFTTDKLRS+VRKW TLIEA V VKT+D+Y LR+F I FT++  NQVKR  YAQ+S IR IR+ + EI+  +     L  L  K I E+I +EIE AT  I+PLQN+ +RKVK+LK PKFD+G LM +HG+ S E+ G K+    DE
Sbjct:   97 LTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKVTGFKDE 250          

HSP 2 Score: 27.335 bits (59), Expect = 8.545e-44
Identity = 10/16 (62.50%), Postives = 15/16 (93.75%), Query Frame = -1
Query:  692 YRKIRLRAEDVQGKNV 739
            +RKI+LR ++VQGKN+
Sbjct:   81 FRKIKLRVDEVQGKNL 96          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A1_YEAS6 (40S ribosomal protein S1-A OS=Saccharomyces cerevisiae (strain AWRI1631) GN=RPS1A PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 8.545e-44
Identity = 88/154 (57.14%), Postives = 110/154 (71.43%), Query Frame = -3
Query:  234 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADE 692
            LTNF GMDFTTDKLRS+VRKW TLIEA V VKT+D+Y LR+F I FT++  NQVKR  YAQ+S IR IR+ + EI+  +     L  L  K I E+I +EIE AT  I+PLQN+ +RKVK+LK PKFD+G LM +HG+ S E+ G K+    DE
Sbjct:   97 LTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKVTGFKDE 250          

HSP 2 Score: 27.335 bits (59), Expect = 8.545e-44
Identity = 10/16 (62.50%), Postives = 15/16 (93.75%), Query Frame = -1
Query:  692 YRKIRLRAEDVQGKNV 739
            +RKI+LR ++VQGKN+
Sbjct:   81 FRKIKLRVDEVQGKNL 96          
The following BLAST results are available for this feature:
BLAST of CX296740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
RS3A_APLCA2.961e-4460.7140S ribosomal protein S3a OS=Aplysia californica G... [more]
RS3A2_YEAST6.557e-4457.1440S ribosomal protein S1-B OS=Saccharomyces cerevi... [more]
RS3A2_YEAS76.557e-4457.1440S ribosomal protein S1-B OS=Saccharomyces cerevi... [more]
RS3A2_YEAS66.557e-4457.1440S ribosomal protein S1-B OS=Saccharomyces cerevi... [more]
RS3A2_YEAS16.557e-4457.1440S ribosomal protein S1-B OS=Saccharomyces cerevi... [more]
RS3A_THEAN8.542e-4457.2440S ribosomal protein S3a OS=Theileria annulata GN... [more]
RS3A_MONBE8.543e-4453.8940S ribosomal protein S3a OS=Monosiga brevicollis ... [more]
RS3A1_YEAST8.545e-4457.1440S ribosomal protein S1-A OS=Saccharomyces cerevi... [more]
RS3A1_YEAS78.545e-4457.1440S ribosomal protein S1-A OS=Saccharomyces cerevi... [more]
RS3A1_YEAS68.545e-4457.1440S ribosomal protein S1-A OS=Saccharomyces cerevi... [more]

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Properties
Property NameValue
Genbank descriptionC05802C06SK FerrChloL1 Citrus clementina cDNA clone C05802C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296740 ID=CX296740; Name=CX296740; organism=Citrus clementina; type=EST; length=757bp
CCGAATTCGGCACGAGGCTGGAATAAAGAATAAGGTAATCATGTTCATAC
CACAGAAACCGCTGCAGCCATCTCAAATATCAGCTAGAATAAAATATGTA
AACTCAAAACAAATTTGAGTTCATCACAAACAAAACTGCCCAAAAATTAC
TAGATCTGATTGGTTATAAAGACAAACTACAAAAATTTCTTTATTCAAGC
TCCAATCACTTCAGTTGGTGCTTCAGGAATGGGCTCATCAGCTGGCCTTT
CCATCTTTACACCAACATCCTCAGAGTAATCACCATGAACCTCCATCAAC
TTTCCAAGATCAAACTTAGGAGCTTTCAAGATCTTCACTTTGCGAATGAA
AACATTTTGTAAGGGGTATATGCTTAAGGTTGCCTTCTCAATCTCTCTTC
CAATTATTTCAGCAATGAACTTTTCGACCAAGCCCTTAAGATCACAGGAT
GCTGCCTGAGCAATCATGATCTCCCTCATCTTGCGGCGAATCTGTCTAAT
CTGGCTGGCCTGTGCGTAGCAAGTCCTCTTAACCTGATTTGGAAGTCTCT
TGGTGAATCCAATGCAGAACATCCTCAATGTGTAGTTATCAGTGGTCTTG
ACATCCACGTAAGCTTCAATCAACGTATGCCACTTCCTAACCAAGGACCT
CAGCTTGTCTGTAGTGAAATCCATGCCCCAGAAGTTTGTCAAACATTCTT
CCCTTGGACATCTTCAGCTCTTAGTCTGATCTTCCTGTAGCATGCTCTTC
TTCATAT
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