CX296740

Overview
NameCX296740
Unique NameCX296740
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A1_YEAS2 (40S ribosomal protein S1-A OS=Saccharomyces cerevisiae (strain JAY291) GN=RPS1A PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 8.545e-44
Identity = 88/154 (57.14%), Postives = 110/154 (71.43%), Query Frame = -3
Query:  234 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADE 692
            LTNF GMDFTTDKLRS+VRKW TLIEA V VKT+D+Y LR+F I FT++  NQVKR  YAQ+S IR IR+ + EI+  +     L  L  K I E+I +EIE AT  I+PLQN+ +RKVK+LK PKFD+G LM +HG+ S E+ G K+    DE
Sbjct:   97 LTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKVTGFKDE 250          

HSP 2 Score: 27.335 bits (59), Expect = 8.545e-44
Identity = 10/16 (62.50%), Postives = 15/16 (93.75%), Query Frame = -1
Query:  692 YRKIRLRAEDVQGKNV 739
            +RKI+LR ++VQGKN+
Sbjct:   81 FRKIKLRVDEVQGKNL 96          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A1_YEAS1 (40S ribosomal protein S1-A OS=Saccharomyces cerevisiae (strain RM11-1a) GN=RPS1A PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 8.545e-44
Identity = 88/154 (57.14%), Postives = 110/154 (71.43%), Query Frame = -3
Query:  234 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADE 692
            LTNF GMDFTTDKLRS+VRKW TLIEA V VKT+D+Y LR+F I FT++  NQVKR  YAQ+S IR IR+ + EI+  +     L  L  K I E+I +EIE AT  I+PLQN+ +RKVK+LK PKFD+G LM +HG+ S E+ G K+    DE
Sbjct:   97 LTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKVTGFKDE 250          

HSP 2 Score: 27.335 bits (59), Expect = 8.545e-44
Identity = 10/16 (62.50%), Postives = 15/16 (93.75%), Query Frame = -1
Query:  692 YRKIRLRAEDVQGKNV 739
            +RKI+LR ++VQGKN+
Sbjct:   81 FRKIKLRVDEVQGKNL 96          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A2_YEAS2 (40S ribosomal protein S1-B OS=Saccharomyces cerevisiae (strain JAY291) GN=RPS1B PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.891e-43
Identity = 87/154 (56.49%), Postives = 111/154 (72.08%), Query Frame = -3
Query:  234 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADE 692
            LTNF GMDFTTDKLRS+VRKW TLIEA V VKT+D+Y LR+F I FT++  NQVKR  YAQ+S IR IR+ + EI+  +  +  L  L  K I E+I +EIE AT  I+PLQN+ +RKVK+LK PKFD+G LM +HG+ S ++ G K+    DE
Sbjct:   97 LTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTREVQNSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGKEKGKKVSGFKDE 250          

HSP 2 Score: 26.9498 bits (58), Expect = 1.891e-43
Identity = 9/16 (56.25%), Postives = 15/16 (93.75%), Query Frame = -1
Query:  692 YRKIRLRAEDVQGKNV 739
            +RK++LR ++VQGKN+
Sbjct:   81 FRKVKLRVDEVQGKNL 96          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_THEPA (40S ribosomal protein S3a OS=Theileria parva GN=TP03_0697 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 3.210e-43
Identity = 83/143 (58.04%), Postives = 107/143 (74.83%), Query Frame = -3
Query:  267 CLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSED 695
            CLT+F G   T DKL SL+RK ++LIEA+ DVKT D Y LR+FC+G+TKR P Q+K TCY + S++R I +KM  +M  +A++  LK LV+K I E IG+EIEKA  SI+PLQNV +RK+K+LK PKFDL KLME H +YS D
Sbjct:   96 CLTDFHGTSVTRDKLCSLIRKNYSLIEAFADVKTLDGYNLRLFCVGYTKRRPGQLKSTCYVRTSKVRLIHKKMVSVMTNEASNSTLKELVKKVIPESIGKEIEKACKSIFPLQNVLVRKIKVLKKPKFDLTKLMESH-NYSGD 237          

HSP 2 Score: 27.7202 bits (60), Expect = 3.210e-43
Identity = 11/15 (73.33%), Postives = 13/15 (86.67%), Query Frame = -1
Query:  695 YRKIRLRAEDVQGKN 739
            YRKI+L  EDVQG+N
Sbjct:   81 YRKIKLSCEDVQGRN 95          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_PICPG (40S ribosomal protein S1 OS=Pichia pastoris (strain GS115) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.578e-43
Identity = 92/168 (54.76%), Postives = 119/168 (70.83%), Query Frame = -3
Query:  252 KKSMLQEDQTKS*RCPREECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKM 752
            KK  L+ D+ +      +  LTNF G DFT+DK+RSLVRKW +L+EA V VKT D+Y LR+FCI FT+R  NQ+K+T YAQ+SQ+  IR+KM EIM  + ++  L  L  K I E+IGREIEKA   IYPLQNV IRKVK+LK  KFDLG L+ +HG+  +E+ G K+
Sbjct:   82 KKIKLRVDEVQG-----KNLLTNFHGFDFTSDKVRSLVRKWQSLVEANVTVKTADDYVLRIFCIAFTRRHQNQIKKTTYAQSSQLSAIRKKMVEIMQREVSNVTLAQLTSKLIPEVIGREIEKAAEGIYPLQNVHIRKVKVLKQAKFDLGALLALHGESVTEENGKKV 244          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_BOMMA (40S ribosomal protein S3a OS=Bombyx mandarina PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 7.103e-43
Identity = 84/163 (51.53%), Postives = 114/163 (69.94%), Query Frame = -3
Query:  219 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---YSEDVGVKMERPA--DEPIPEA 692
            L NF GMD TTDKLR +V+KW TLIEA +DVKTTD Y LR+FCIGFT +     ++TCYAQ +Q+R IR+KM EI+     + +L+ +V K I + I ++IEKA   IYPL++V IRKVK+LK P+F++ KLME+HG+      + G K ERP   + P+ E+
Sbjct:  100 LCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHGEGGGGKREAGDKSERPEGYEPPVQES 262          

HSP 2 Score: 28.1054 bits (61), Expect = 7.103e-43
Identity = 12/16 (75.00%), Postives = 14/16 (87.50%), Query Frame = -1
Query:  692 YRKIRLRAEDVQGKNV 739
            +RK RL AEDVQG+NV
Sbjct:   84 FRKFRLIAEDVQGRNV 99          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_AEDAE (40S ribosomal protein S3a OS=Aedes aegypti GN=AAEL005901 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.571e-42
Identity = 87/170 (51.18%), Postives = 115/170 (67.65%), Query Frame = -3
Query:  219 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD----------YSEDVGVKMERPA--DEPIPEA 692
            L NF GMD TTDKLRS+V+KW TLIE  VDVKTTD Y LR+FCIGFT +     ++TCYAQ SQI++IRRKM  I+     S DLK +V K + + I ++IEK+   IYPL +V+IRKVK+LK P+FDL  L+E+HGD           + + GV ++RP   + P+ E+
Sbjct:  100 LCNFHGMDLTTDKLRSMVKKWQTLIECSVDVKTTDGYLLRVFCIGFTIKDSVSQRKTCYAQHSQIKEIRRKMTTIITRDVTSSDLKEVVNKLLPDSIAKDIEKSCQGIYPLHDVYIRKVKVLKKPRFDLANLLELHGDGGGKGAEVSTGAAEGGVTIDRPEGYEPPVQES 269          

HSP 2 Score: 25.0238 bits (53), Expect = 1.571e-42
Identity = 10/16 (62.50%), Postives = 13/16 (81.25%), Query Frame = -1
Query:  692 YRKIRLRAEDVQGKNV 739
            +RK +L AEDV G+NV
Sbjct:   84 FRKFKLIAEDVHGRNV 99          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_SPOFR (40S ribosomal protein S3a OS=Spodoptera frugiperda PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.572e-42
Identity = 83/164 (50.61%), Postives = 114/164 (69.51%), Query Frame = -3
Query:  219 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE----DVGVKMERPA--DEPIPEA 692
            L NF GMD TTDKLR +V+KW TL+EA +DVKTTD Y LR+FCIGFT +     ++TCYAQ +Q+R IR+KM EI+     + +L+ +V K I + I ++IEKA   IYPL++V IRKVK+LK P+F++ KLME+HG+       + G K ERP   + P+ E+
Sbjct:  100 LCNFHGMDLTTDKLRWMVKKWQTLVEANIDVKTTDGYLLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHGEGGSGKRGEAGDKSERPEGYEPPVQES 263          

HSP 2 Score: 28.1054 bits (61), Expect = 1.572e-42
Identity = 12/16 (75.00%), Postives = 14/16 (87.50%), Query Frame = -1
Query:  692 YRKIRLRAEDVQGKNV 739
            +RK RL AEDVQG+NV
Sbjct:   84 FRKFRLIAEDVQGRNV 99          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_CULQU (40S ribosomal protein S3a OS=Culex quinquefasciatus GN=CPIJ008584 PE=3 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 2.668e-42
Identity = 80/138 (57.97%), Postives = 102/138 (73.91%), Query Frame = -3
Query:  279 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 692
            L NF GMD TTDKLRS+V+KW TLIE  VDVKTTDNY LR+FCIGFT +     ++TCYAQ SQI+ IR+ M +I+     S DLK +V K + + I ++IEKA   +YPL +V+IRKVK+LK P+FDL  L+E+HGD
Sbjct:  100 LCNFHGMDLTTDKLRSMVKKWQTLIECSVDVKTTDNYLLRVFCIGFTIKDQVSQRKTCYAQHSQIKAIRKNMTQIITNNVTSSDLKEVVNKLLPDSIAKDIEKACQGVYPLHDVYIRKVKVLKKPRFDLANLLELHGD 237          

HSP 2 Score: 25.0238 bits (53), Expect = 2.668e-42
Identity = 10/16 (62.50%), Postives = 13/16 (81.25%), Query Frame = -1
Query:  692 YRKIRLRAEDVQGKNV 739
            +RK +L AEDV G+NV
Sbjct:   84 FRKFKLIAEDVHGRNV 99          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_CAEBR (40S ribosomal protein S3a OS=Caenorhabditis briggsae GN=rps-1 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 3.478e-42
Identity = 86/159 (54.09%), Postives = 109/159 (68.55%), Query Frame = -3
Query:  225 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGV---KMERPADEPIP 692
            LTNF  M  T DKL S+V+KWHTLIEA   VKTTD YTLR+F I FTK+  NQVK+T Y + S+IR+IR +M   +  +   CDLK +V K I + IG++IEK    +YPLQ V+IRKVKI+K PK DLG+L ++HGD S  VG    K++RP D   P
Sbjct:   95 LTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVIAFTKKSANQVKKTSYTKTSKIRKIRSEMISCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRPKIDLGRLHDLHGD-SITVGADGEKVDRPDDYEPP 252          

HSP 2 Score: 28.4906 bits (62), Expect = 3.478e-42
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = -1
Query:  692 ACYRKIRLRAEDVQGKNV 745
            A +RK +L AEDVQGKNV
Sbjct:   77 ADFRKFKLIAEDVQGKNV 94          
The following BLAST results are available for this feature:
BLAST of CX296740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
RS3A1_YEAS28.545e-4457.1440S ribosomal protein S1-A OS=Saccharomyces cerevi... [more]
RS3A1_YEAS18.545e-4457.1440S ribosomal protein S1-A OS=Saccharomyces cerevi... [more]
RS3A2_YEAS21.891e-4356.4940S ribosomal protein S1-B OS=Saccharomyces cerevi... [more]
RS3A_THEPA3.210e-4358.0440S ribosomal protein S3a OS=Theileria parva GN=TP... [more]
RS3A_PICPG5.578e-4354.7640S ribosomal protein S1 OS=Pichia pastoris (strai... [more]
RS3A_BOMMA7.103e-4351.5340S ribosomal protein S3a OS=Bombyx mandarina PE=2... [more]
RS3A_AEDAE1.571e-4251.1840S ribosomal protein S3a OS=Aedes aegypti GN=AAEL... [more]
RS3A_SPOFR1.572e-4250.6140S ribosomal protein S3a OS=Spodoptera frugiperda... [more]
RS3A_CULQU2.668e-4257.9740S ribosomal protein S3a OS=Culex quinquefasciatu... [more]
RS3A_CAEBR3.478e-4254.0940S ribosomal protein S3a OS=Caenorhabditis briggs... [more]

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Properties
Property NameValue
Genbank descriptionC05802C06SK FerrChloL1 Citrus clementina cDNA clone C05802C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296740 ID=CX296740; Name=CX296740; organism=Citrus clementina; type=EST; length=757bp
CCGAATTCGGCACGAGGCTGGAATAAAGAATAAGGTAATCATGTTCATAC
CACAGAAACCGCTGCAGCCATCTCAAATATCAGCTAGAATAAAATATGTA
AACTCAAAACAAATTTGAGTTCATCACAAACAAAACTGCCCAAAAATTAC
TAGATCTGATTGGTTATAAAGACAAACTACAAAAATTTCTTTATTCAAGC
TCCAATCACTTCAGTTGGTGCTTCAGGAATGGGCTCATCAGCTGGCCTTT
CCATCTTTACACCAACATCCTCAGAGTAATCACCATGAACCTCCATCAAC
TTTCCAAGATCAAACTTAGGAGCTTTCAAGATCTTCACTTTGCGAATGAA
AACATTTTGTAAGGGGTATATGCTTAAGGTTGCCTTCTCAATCTCTCTTC
CAATTATTTCAGCAATGAACTTTTCGACCAAGCCCTTAAGATCACAGGAT
GCTGCCTGAGCAATCATGATCTCCCTCATCTTGCGGCGAATCTGTCTAAT
CTGGCTGGCCTGTGCGTAGCAAGTCCTCTTAACCTGATTTGGAAGTCTCT
TGGTGAATCCAATGCAGAACATCCTCAATGTGTAGTTATCAGTGGTCTTG
ACATCCACGTAAGCTTCAATCAACGTATGCCACTTCCTAACCAAGGACCT
CAGCTTGTCTGTAGTGAAATCCATGCCCCAGAAGTTTGTCAAACATTCTT
CCCTTGGACATCTTCAGCTCTTAGTCTGATCTTCCTGTAGCATGCTCTTC
TTCATAT
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