CX296740
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A1_YEAS2 (40S ribosomal protein S1-A OS=Saccharomyces cerevisiae (strain JAY291) GN=RPS1A PE=3 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 8.545e-44 Identity = 88/154 (57.14%), Postives = 110/154 (71.43%), Query Frame = -3 Query: 234 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADE 692 LTNF GMDFTTDKLRS+VRKW TLIEA V VKT+D+Y LR+F I FT++ NQVKR YAQ+S IR IR+ + EI+ + L L K I E+I +EIE AT I+PLQN+ +RKVK+LK PKFD+G LM +HG+ S E+ G K+ DE Sbjct: 97 LTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKVTGFKDE 250 HSP 2 Score: 27.335 bits (59), Expect = 8.545e-44 Identity = 10/16 (62.50%), Postives = 15/16 (93.75%), Query Frame = -1 Query: 692 YRKIRLRAEDVQGKNV 739 +RKI+LR ++VQGKN+ Sbjct: 81 FRKIKLRVDEVQGKNL 96
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A1_YEAS1 (40S ribosomal protein S1-A OS=Saccharomyces cerevisiae (strain RM11-1a) GN=RPS1A PE=3 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 8.545e-44 Identity = 88/154 (57.14%), Postives = 110/154 (71.43%), Query Frame = -3 Query: 234 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADE 692 LTNF GMDFTTDKLRS+VRKW TLIEA V VKT+D+Y LR+F I FT++ NQVKR YAQ+S IR IR+ + EI+ + L L K I E+I +EIE AT I+PLQN+ +RKVK+LK PKFD+G LM +HG+ S E+ G K+ DE Sbjct: 97 LTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKVTGFKDE 250 HSP 2 Score: 27.335 bits (59), Expect = 8.545e-44 Identity = 10/16 (62.50%), Postives = 15/16 (93.75%), Query Frame = -1 Query: 692 YRKIRLRAEDVQGKNV 739 +RKI+LR ++VQGKN+ Sbjct: 81 FRKIKLRVDEVQGKNL 96
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A2_YEAS2 (40S ribosomal protein S1-B OS=Saccharomyces cerevisiae (strain JAY291) GN=RPS1B PE=3 SV=1) HSP 1 Score: 168.703 bits (426), Expect = 1.891e-43 Identity = 87/154 (56.49%), Postives = 111/154 (72.08%), Query Frame = -3 Query: 234 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADE 692 LTNF GMDFTTDKLRS+VRKW TLIEA V VKT+D+Y LR+F I FT++ NQVKR YAQ+S IR IR+ + EI+ + + L L K I E+I +EIE AT I+PLQN+ +RKVK+LK PKFD+G LM +HG+ S ++ G K+ DE Sbjct: 97 LTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTREVQNSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGKEKGKKVSGFKDE 250 HSP 2 Score: 26.9498 bits (58), Expect = 1.891e-43 Identity = 9/16 (56.25%), Postives = 15/16 (93.75%), Query Frame = -1 Query: 692 YRKIRLRAEDVQGKNV 739 +RK++LR ++VQGKN+ Sbjct: 81 FRKVKLRVDEVQGKNL 96
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_THEPA (40S ribosomal protein S3a OS=Theileria parva GN=TP03_0697 PE=3 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 3.210e-43 Identity = 83/143 (58.04%), Postives = 107/143 (74.83%), Query Frame = -3 Query: 267 CLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSED 695 CLT+F G T DKL SL+RK ++LIEA+ DVKT D Y LR+FC+G+TKR P Q+K TCY + S++R I +KM +M +A++ LK LV+K I E IG+EIEKA SI+PLQNV +RK+K+LK PKFDL KLME H +YS D Sbjct: 96 CLTDFHGTSVTRDKLCSLIRKNYSLIEAFADVKTLDGYNLRLFCVGYTKRRPGQLKSTCYVRTSKVRLIHKKMVSVMTNEASNSTLKELVKKVIPESIGKEIEKACKSIFPLQNVLVRKIKVLKKPKFDLTKLMESH-NYSGD 237 HSP 2 Score: 27.7202 bits (60), Expect = 3.210e-43 Identity = 11/15 (73.33%), Postives = 13/15 (86.67%), Query Frame = -1 Query: 695 YRKIRLRAEDVQGKN 739 YRKI+L EDVQG+N Sbjct: 81 YRKIKLSCEDVQGRN 95
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_PICPG (40S ribosomal protein S1 OS=Pichia pastoris (strain GS115) GN=RPS1 PE=3 SV=1) HSP 1 Score: 174.481 bits (441), Expect = 5.578e-43 Identity = 92/168 (54.76%), Postives = 119/168 (70.83%), Query Frame = -3 Query: 252 KKSMLQEDQTKS*RCPREECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKM 752 KK L+ D+ + + LTNF G DFT+DK+RSLVRKW +L+EA V VKT D+Y LR+FCI FT+R NQ+K+T YAQ+SQ+ IR+KM EIM + ++ L L K I E+IGREIEKA IYPLQNV IRKVK+LK KFDLG L+ +HG+ +E+ G K+ Sbjct: 82 KKIKLRVDEVQG-----KNLLTNFHGFDFTSDKVRSLVRKWQSLVEANVTVKTADDYVLRIFCIAFTRRHQNQIKKTTYAQSSQLSAIRKKMVEIMQREVSNVTLAQLTSKLIPEVIGREIEKAAEGIYPLQNVHIRKVKVLKQAKFDLGALLALHGESVTEENGKKV 244
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_BOMMA (40S ribosomal protein S3a OS=Bombyx mandarina PE=2 SV=1) HSP 1 Score: 165.622 bits (418), Expect = 7.103e-43 Identity = 84/163 (51.53%), Postives = 114/163 (69.94%), Query Frame = -3 Query: 219 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---YSEDVGVKMERPA--DEPIPEA 692 L NF GMD TTDKLR +V+KW TLIEA +DVKTTD Y LR+FCIGFT + ++TCYAQ +Q+R IR+KM EI+ + +L+ +V K I + I ++IEKA IYPL++V IRKVK+LK P+F++ KLME+HG+ + G K ERP + P+ E+ Sbjct: 100 LCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHGEGGGGKREAGDKSERPEGYEPPVQES 262 HSP 2 Score: 28.1054 bits (61), Expect = 7.103e-43 Identity = 12/16 (75.00%), Postives = 14/16 (87.50%), Query Frame = -1 Query: 692 YRKIRLRAEDVQGKNV 739 +RK RL AEDVQG+NV Sbjct: 84 FRKFRLIAEDVQGRNV 99
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_AEDAE (40S ribosomal protein S3a OS=Aedes aegypti GN=AAEL005901 PE=2 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 1.571e-42 Identity = 87/170 (51.18%), Postives = 115/170 (67.65%), Query Frame = -3 Query: 219 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD----------YSEDVGVKMERPA--DEPIPEA 692 L NF GMD TTDKLRS+V+KW TLIE VDVKTTD Y LR+FCIGFT + ++TCYAQ SQI++IRRKM I+ S DLK +V K + + I ++IEK+ IYPL +V+IRKVK+LK P+FDL L+E+HGD + + GV ++RP + P+ E+ Sbjct: 100 LCNFHGMDLTTDKLRSMVKKWQTLIECSVDVKTTDGYLLRVFCIGFTIKDSVSQRKTCYAQHSQIKEIRRKMTTIITRDVTSSDLKEVVNKLLPDSIAKDIEKSCQGIYPLHDVYIRKVKVLKKPRFDLANLLELHGDGGGKGAEVSTGAAEGGVTIDRPEGYEPPVQES 269 HSP 2 Score: 25.0238 bits (53), Expect = 1.571e-42 Identity = 10/16 (62.50%), Postives = 13/16 (81.25%), Query Frame = -1 Query: 692 YRKIRLRAEDVQGKNV 739 +RK +L AEDV G+NV Sbjct: 84 FRKFKLIAEDVHGRNV 99
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_SPOFR (40S ribosomal protein S3a OS=Spodoptera frugiperda PE=2 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 1.572e-42 Identity = 83/164 (50.61%), Postives = 114/164 (69.51%), Query Frame = -3 Query: 219 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE----DVGVKMERPA--DEPIPEA 692 L NF GMD TTDKLR +V+KW TL+EA +DVKTTD Y LR+FCIGFT + ++TCYAQ +Q+R IR+KM EI+ + +L+ +V K I + I ++IEKA IYPL++V IRKVK+LK P+F++ KLME+HG+ + G K ERP + P+ E+ Sbjct: 100 LCNFHGMDLTTDKLRWMVKKWQTLVEANIDVKTTDGYLLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHGEGGSGKRGEAGDKSERPEGYEPPVQES 263 HSP 2 Score: 28.1054 bits (61), Expect = 1.572e-42 Identity = 12/16 (75.00%), Postives = 14/16 (87.50%), Query Frame = -1 Query: 692 YRKIRLRAEDVQGKNV 739 +RK RL AEDVQG+NV Sbjct: 84 FRKFRLIAEDVQGRNV 99
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_CULQU (40S ribosomal protein S3a OS=Culex quinquefasciatus GN=CPIJ008584 PE=3 SV=2) HSP 1 Score: 166.777 bits (421), Expect = 2.668e-42 Identity = 80/138 (57.97%), Postives = 102/138 (73.91%), Query Frame = -3 Query: 279 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 692 L NF GMD TTDKLRS+V+KW TLIE VDVKTTDNY LR+FCIGFT + ++TCYAQ SQI+ IR+ M +I+ S DLK +V K + + I ++IEKA +YPL +V+IRKVK+LK P+FDL L+E+HGD Sbjct: 100 LCNFHGMDLTTDKLRSMVKKWQTLIECSVDVKTTDNYLLRVFCIGFTIKDQVSQRKTCYAQHSQIKAIRKNMTQIITNNVTSSDLKEVVNKLLPDSIAKDIEKACQGVYPLHDVYIRKVKVLKKPRFDLANLLELHGD 237 HSP 2 Score: 25.0238 bits (53), Expect = 2.668e-42 Identity = 10/16 (62.50%), Postives = 13/16 (81.25%), Query Frame = -1 Query: 692 YRKIRLRAEDVQGKNV 739 +RK +L AEDV G+NV Sbjct: 84 FRKFKLIAEDVHGRNV 99
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_CAEBR (40S ribosomal protein S3a OS=Caenorhabditis briggsae GN=rps-1 PE=3 SV=1) HSP 1 Score: 162.925 bits (411), Expect = 3.478e-42 Identity = 86/159 (54.09%), Postives = 109/159 (68.55%), Query Frame = -3 Query: 225 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGV---KMERPADEPIP 692 LTNF M T DKL S+V+KWHTLIEA VKTTD YTLR+F I FTK+ NQVK+T Y + S+IR+IR +M + + CDLK +V K I + IG++IEK +YPLQ V+IRKVKI+K PK DLG+L ++HGD S VG K++RP D P Sbjct: 95 LTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVIAFTKKSANQVKKTSYTKTSKIRKIRSEMISCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRPKIDLGRLHDLHGD-SITVGADGEKVDRPDDYEPP 252 HSP 2 Score: 28.4906 bits (62), Expect = 3.478e-42 Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = -1 Query: 692 ACYRKIRLRAEDVQGKNV 745 A +RK +L AEDVQGKNV Sbjct: 77 ADFRKFKLIAEDVQGKNV 94 The following BLAST results are available for this feature:
BLAST of CX296740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 166
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296740 ID=CX296740; Name=CX296740; organism=Citrus clementina; type=EST; length=757bpback to top |