CX296740

Overview
NameCX296740
Unique NameCX296740
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_CAEEL (40S ribosomal protein S3a OS=Caenorhabditis elegans GN=rps-1 PE=1 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 1.003e-41
Identity = 86/159 (54.09%), Postives = 109/159 (68.55%), Query Frame = -3 
Query:  225 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGV---KMERPADEPIP 692
            LTNF  M  T DKL S+V+KWHTLIEA   VKTTD YTLR+F I FTK+  NQVK+T Y + S+IR+IR +M   +  +   CDLK +V K I + IG++IEK    +YPLQ V+IRKVKI+K PK DLG+L ++HGD S  VG    K++RP D   P
Sbjct:   95 LTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVIAFTKKSVNQVKKTSYTKTSKIRKIRSEMIGCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRPKVDLGRLHDLHGD-SITVGADGEKVDRPDDYEPP 252

HSP 2 Score: 28.4906 bits (62), Expect = 1.003e-41
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = -1 
Query:  692 ACYRKIRLRAEDVQGKNV 745
            A +RK +L AEDVQGKNV
Sbjct:   77 ADFRKFKLIAEDVQGKNV 94
[Close]
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_BOMMO (40S ribosomal protein S3a OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.306e-41
Identity = 84/163 (51.53%), Postives = 114/163 (69.94%), Query Frame = -3 
Query:  219 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---YSEDVGVKMERPA--DEPIPEA 692
            L NF GMD TTDKLR +V+KW TLIEA +DVKTTD Y LR+FCIGFT +     ++TCYAQ +Q+R IR+KM EI+     + +L+ +V K I + I ++IEKA   IYPL++V IRKVK+LK P+F++ KLME+HG+      + G K ERP   + P+ E+
Sbjct:  100 LCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHGEGGGGKGEAGDKSERPEGYEPPVQES 262

HSP 2 Score: 24.6386 bits (52), Expect = 1.306e-41
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = -1 
Query:  692 YRKIRLRAEDVQGKNV 739
            +RK RL AE VQG+NV
Sbjct:   84 FRKFRLIAEYVQGRNV 99
[Close]
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_DROWI (40S ribosomal protein S3a OS=Drosophila willistoni GN=RpS3A PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 2.217e-41
Identity = 85/168 (50.60%), Postives = 114/168 (67.86%), Query Frame = -3 
Query:  219 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD----YSEDV----GVKMERPA--DEPIPEA 692
            L NF GMD TTDK RS+V+KW TLIEA V+ KT D Y LR+FCIGFT +     ++TCYAQ SQ+R+IR +M +I+  + +  DLK LV K   + I ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+HGD     SE V    G  ++RP   + P+ EA
Sbjct:  100 LCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIINNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDISKLLELHGDGGGKTSEAVVSAEGAVVDRPEGYEPPVQEA 267

HSP 2 Score: 25.409 bits (54), Expect = 2.217e-41
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = -1 
Query:  692 YRKIRLRAEDVQGKNV 739
            +RK RL AEDVQ +NV
Sbjct:   84 FRKFRLIAEDVQDRNV 99
[Close]
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_DROVI (40S ribosomal protein S3a OS=Drosophila virilis GN=RpS3A PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.889e-41
Identity = 76/138 (55.07%), Postives = 101/138 (73.19%), Query Frame = -3 
Query:  279 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 692
            L NF GMD TTDK RS+V+KW TLIEA V+ KT D Y LR+FCIGFT +     ++TCYAQ SQ+R+IR +M +I+  + +  DLK LV K   + I ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+HGD
Sbjct:  100 LCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTSKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGD 237

HSP 2 Score: 25.409 bits (54), Expect = 2.889e-41
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = -1 
Query:  692 YRKIRLRAEDVQGKNV 739
            +RK RL AEDVQ +NV
Sbjct:   84 FRKFRLIAEDVQDRNV 99
[Close]
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_DROPS (40S ribosomal protein S3a OS=Drosophila pseudoobscura pseudoobscura GN=RpS3A PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 3.764e-41
Identity = 76/138 (55.07%), Postives = 101/138 (73.19%), Query Frame = -3 
Query:  279 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 692
            L NF GMD TTDK RS+V+KW TLIEA V+ KT D Y LR+FCIGFT +     ++TCYAQ SQ+R+IR +M +I+  + +  DLK LV K   + I ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+HGD
Sbjct:  100 LCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGD 237

HSP 2 Score: 25.409 bits (54), Expect = 3.764e-41
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = -1 
Query:  692 YRKIRLRAEDVQGKNV 739
            +RK RL AEDVQ +NV
Sbjct:   84 FRKFRLIAEDVQDRNV 99
[Close]
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_DROPE (40S ribosomal protein S3a OS=Drosophila persimilis GN=RpS3A PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 3.764e-41
Identity = 76/138 (55.07%), Postives = 101/138 (73.19%), Query Frame = -3 
Query:  279 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 692
            L NF GMD TTDK RS+V+KW TLIEA V+ KT D Y LR+FCIGFT +     ++TCYAQ SQ+R+IR +M +I+  + +  DLK LV K   + I ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+HGD
Sbjct:  100 LCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGD 237

HSP 2 Score: 25.409 bits (54), Expect = 3.764e-41
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = -1 
Query:  692 YRKIRLRAEDVQGKNV 739
            +RK RL AEDVQ +NV
Sbjct:   84 FRKFRLIAEDVQDRNV 99
[Close]
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_DROME (40S ribosomal protein S3a OS=Drosophila melanogaster GN=RpS3A PE=1 SV=3)

HSP 1 Score: 162.54 bits (410), Expect = 3.764e-41
Identity = 76/138 (55.07%), Postives = 101/138 (73.19%), Query Frame = -3 
Query:  279 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 692
            L NF GMD TTDK RS+V+KW TLIEA V+ KT D Y LR+FCIGFT +     ++TCYAQ SQ+R+IR +M +I+  + +  DLK LV K   + I ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+HGD
Sbjct:  100 LCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGD 237

HSP 2 Score: 25.409 bits (54), Expect = 3.764e-41
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = -1 
Query:  692 YRKIRLRAEDVQGKNV 739
            +RK RL AEDVQ +NV
Sbjct:   84 FRKFRLIAEDVQDRNV 99
[Close]
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_DROER (40S ribosomal protein S3a OS=Drosophila erecta GN=RpS3A PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 3.764e-41
Identity = 76/138 (55.07%), Postives = 101/138 (73.19%), Query Frame = -3 
Query:  279 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 692
            L NF GMD TTDK RS+V+KW TLIEA V+ KT D Y LR+FCIGFT +     ++TCYAQ SQ+R+IR +M +I+  + +  DLK LV K   + I ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+HGD
Sbjct:  100 LCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGD 237

HSP 2 Score: 25.409 bits (54), Expect = 3.764e-41
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = -1 
Query:  692 YRKIRLRAEDVQGKNV 739
            +RK RL AEDVQ +NV
Sbjct:   84 FRKFRLIAEDVQDRNV 99
[Close]
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_ANOGA (40S ribosomal protein S3a OS=Anopheles gambiae GN=RpS3A PE=2 SV=3)

HSP 1 Score: 168.318 bits (425), Expect = 3.997e-41
Identity = 82/140 (58.57%), Postives = 104/140 (74.29%), Query Frame = -3 
Query:  279 ECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 698
            + LTNF GM  TTDKLRS+V+KW TLIE  VDVKTTD + LR+FCIGFT +     ++TCYAQ SQI+ IR KM  I+  +  S DLKG+VEK + + I ++IEKA   +YPL +V+IRKVK+LK P+FDL  LME+HGD
Sbjct:   98 DVLTNFHGMALTTDKLRSMVKKWQTLIECSVDVKTTDGFMLRVFCIGFTIKDSMSQRKTCYAQHSQIKNIRAKMTAIIKREITSTDLKGVVEKLLPDSIAKDIEKACQVVYPLHDVYIRKVKVLKKPRFDLSSLMELHGD 237
[Close]
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_ANODA (40S ribosomal protein S3a OS=Anopheles darlingi PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.997e-41
Identity = 81/140 (57.86%), Postives = 105/140 (75.00%), Query Frame = -3 
Query:  279 ECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 698
            + L NF GMD TTDKLRS+V+KW TLIE  VDVKTTD Y LR+FCIGFT +     ++TCYAQ SQI+ IR++M  I+  +  + DLKG+VEK + + I ++IEKA   +YPL +VFIRKVK+LK P+FDL  L+E+HGD
Sbjct:   98 DVLCNFHGMDLTTDKLRSMVKKWQTLIECSVDVKTTDGYLLRVFCIGFTIKDSVSQRKTCYAQHSQIKNIRQRMTTIIKREIINSDLKGVVEKLLPDSIAKDIEKACQVVYPLHDVFIRKVKVLKKPRFDLSSLLELHGD 237
The following BLAST results are available for this feature:
BLAST of CX296740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
RS3A_CAEEL1.003e-4154.0940S ribosomal protein S3a OS=Caenorhabditis elegan... [more]
RS3A_BOMMO1.306e-4151.5340S ribosomal protein S3a OS=Bombyx mori PE=2 SV=1[more]
RS3A_DROWI2.217e-4150.6040S ribosomal protein S3a OS=Drosophila willistoni... [more]
RS3A_DROVI2.889e-4155.0740S ribosomal protein S3a OS=Drosophila virilis GN... [more]
RS3A_DROPS3.764e-4155.0740S ribosomal protein S3a OS=Drosophila pseudoobsc... [more]
RS3A_DROPE3.764e-4155.0740S ribosomal protein S3a OS=Drosophila persimilis... [more]
RS3A_DROME3.764e-4155.0740S ribosomal protein S3a OS=Drosophila melanogast... [more]
RS3A_DROER3.764e-4155.0740S ribosomal protein S3a OS=Drosophila erecta GN=... [more]
RS3A_ANOGA3.997e-4158.5740S ribosomal protein S3a OS=Anopheles gambiae GN=... [more]
RS3A_ANODA3.997e-4157.8640S ribosomal protein S3a OS=Anopheles darlingi PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05802C06SK FerrChloL1 Citrus clementina cDNA clone C05802C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296740 ID=CX296740; Name=CX296740; organism=Citrus clementina; type=EST; length=757bp
CCGAATTCGGCACGAGGCTGGAATAAAGAATAAGGTAATCATGTTCATAC
CACAGAAACCGCTGCAGCCATCTCAAATATCAGCTAGAATAAAATATGTA
AACTCAAAACAAATTTGAGTTCATCACAAACAAAACTGCCCAAAAATTAC
TAGATCTGATTGGTTATAAAGACAAACTACAAAAATTTCTTTATTCAAGC
TCCAATCACTTCAGTTGGTGCTTCAGGAATGGGCTCATCAGCTGGCCTTT
CCATCTTTACACCAACATCCTCAGAGTAATCACCATGAACCTCCATCAAC
TTTCCAAGATCAAACTTAGGAGCTTTCAAGATCTTCACTTTGCGAATGAA
AACATTTTGTAAGGGGTATATGCTTAAGGTTGCCTTCTCAATCTCTCTTC
CAATTATTTCAGCAATGAACTTTTCGACCAAGCCCTTAAGATCACAGGAT
GCTGCCTGAGCAATCATGATCTCCCTCATCTTGCGGCGAATCTGTCTAAT
CTGGCTGGCCTGTGCGTAGCAAGTCCTCTTAACCTGATTTGGAAGTCTCT
TGGTGAATCCAATGCAGAACATCCTCAATGTGTAGTTATCAGTGGTCTTG
ACATCCACGTAAGCTTCAATCAACGTATGCCACTTCCTAACCAAGGACCT
CAGCTTGTCTGTAGTGAAATCCATGCCCCAGAAGTTTGTCAAACATTCTT
CCCTTGGACATCTTCAGCTCTTAGTCTGATCTTCCTGTAGCATGCTCTTC
TTCATAT
back to top