CX296740

Overview
NameCX296740
Unique NameCX296740
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_DROSE (40S ribosomal protein S3a OS=Drosophila sechellia GN=RpS3A PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 4.905e-41
Identity = 76/138 (55.07%), Postives = 101/138 (73.19%), Query Frame = -3 
Query:  279 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 692
            L NF GMD TTDK RS+V+KW TLIEA V+ KT D Y LR+FCIGFT +     ++TCYAQ SQ+R+IR +M +I+  + +  DLK LV K   + I ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+HGD
Sbjct:  100 LCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTIDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGD 237

HSP 2 Score: 25.409 bits (54), Expect = 4.905e-41
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = -1 
Query:  692 YRKIRLRAEDVQGKNV 739
            +RK RL AEDVQ +NV
Sbjct:   84 FRKFRLIAEDVQDRNV 99
[Close]
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_DROMO (40S ribosomal protein S3a OS=Drosophila mojavensis GN=RpS3A PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 4.905e-41
Identity = 76/138 (55.07%), Postives = 101/138 (73.19%), Query Frame = -3 
Query:  279 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 692
            L NF GMD TTDK RS+V+KW TLIEA V+ KT D Y LR+FCIGFT +     ++TCYAQ SQ+R+IR +M +I+  + +  DLK LV K   + I ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+HGD
Sbjct:  100 LCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTFKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDISKLLELHGD 237

HSP 2 Score: 25.409 bits (54), Expect = 4.905e-41
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = -1 
Query:  692 YRKIRLRAEDVQGKNV 739
            +RK RL AEDVQ +NV
Sbjct:   84 FRKFRLIAEDVQDRNV 99
[Close]
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_DROAN (40S ribosomal protein S3a OS=Drosophila ananassae GN=RpS3A PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 4.905e-41
Identity = 84/168 (50.00%), Postives = 113/168 (67.26%), Query Frame = -3 
Query:  219 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---YSEDV-----GVKMERPA--DEPIPEA 692
            L NF GMD TTDK RS+V+KW TLIEA V+ KT D Y LR+FCIGFT +     ++TCYAQ SQ+R+IR +M +I+  + +  DLK LV K   + I ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+HGD    S D      G  ++RP   + P+ EA
Sbjct:  100 LCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTIDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIINNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSSDAVVSTEGAVIDRPEGYEPPVQEA 267

HSP 2 Score: 25.409 bits (54), Expect = 4.905e-41
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = -1 
Query:  692 YRKIRLRAEDVQGKNV 739
            +RK RL AEDVQ +NV
Sbjct:   84 FRKFRLIAEDVQDRNV 99
[Close]
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_PODAN (40S ribosomal protein S1 OS=Podospora anserina GN=RPS1 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.394e-41
Identity = 79/117 (67.52%), Postives = 94/117 (80.34%), Query Frame = -3 
Query:  351 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNV 701
            + CLTNF G+DFT+DKLRSLVRKW TLIEA V V+TTD+Y LR+F I FTKR PNQ+K+T YA +SQIR IR+KM EI+  +A+SC L+ L  K I E+IGREIEKAT  IYPLQNV
Sbjct:   94 KNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVQTTDHYLLRLFAIAFTKRRPNQIKKTTYAASSQIRAIRKKMTEIIQREASSCTLQQLTSKLIPEVIGREIEKATQGIYPLQNV 210

HSP 2 Score: 26.5646 bits (57), Expect = 6.394e-41
Identity = 9/15 (60.00%), Postives = 14/15 (93.33%), Query Frame = -1 
Query:  695 YRKIRLRAEDVQGKN 739
            +RK++LR ++VQGKN
Sbjct:   81 FRKVKLRVDEVQGKN 95
[Close]
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_DROGR (40S ribosomal protein S3a OS=Drosophila grimshawi GN=RpS3A PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.414e-40
Identity = 75/138 (54.35%), Postives = 101/138 (73.19%), Query Frame = -3 
Query:  279 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 692
            L NF GMD TTDK RS+V+KW TLIEA V+ KT+D Y LR+FCIGFT +     ++TCYAQ SQ+R+IR +M +I+  + +  DLK LV K   + I ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+H D
Sbjct:  100 LCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTSDGYLLRIFCIGFTSKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGVDLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHND 237

HSP 2 Score: 25.409 bits (54), Expect = 1.414e-40
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = -1 
Query:  692 YRKIRLRAEDVQGKNV 739
            +RK RL AEDVQ +NV
Sbjct:   84 FRKFRLIAEDVQDRNV 99
[Close]
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_TAESO (40S ribosomal protein S3a OS=Taenia solium PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.274e-36
Identity = 73/152 (48.03%), Postives = 104/152 (68.42%), Query Frame = -3 
Query:  243 CLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERP 695
            CLTNF GMD T DKL  +V KW + IEA+VDVKTTD YTLR F I FTK+  +Q K   YAQ ++I+++R K+ E++  + A CDLK +V+K I + IG++      SI+PL    +RKVK+LK PK DLG+++E+H +  +++ G  + RP
Sbjct:   96 CLTNFHGMDLTRDKLCGMVLKWQSTIEAHVDVKTTDGYTLRFFVIAFTKKQEDQ-KSHAYAQTTRIKKLRAKIVEVVQREVARCDLKSVVQKLIPDSIGQDAMNEASSIFPLSGALVRKVKVLKKPKLDLGRILELHSEGKADEFGEGVPRP 246

HSP 2 Score: 23.483 bits (49), Expect = 4.274e-36
Identity = 8/15 (53.33%), Postives = 13/15 (86.67%), Query Frame = -1 
Query:  695 YRKIRLRAEDVQGKN 739
            +RK +L+ EDVQG++
Sbjct:   81 FRKFKLQVEDVQGRH 95
[Close]
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_DICDI (40S ribosomal protein S3a OS=Dictyostelium discoideum GN=rps3a PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.230e-35
Identity = 78/170 (45.88%), Postives = 106/170 (62.35%), Query Frame = -3 
Query:  246 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFI--------------AEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-------SEDVGVKMER 692
            LTNF+GMD T+DKLRSL+ KW TLIE +VDVKTTD Y LR+F I FTK+  +Q K+T YA+ S+++ IR+KM +I+    +S DLK +V+  I              A  +  +I     SI+P+ NVFIRKVK+LK PK D  KL E++          +E+VG  +ER
Sbjct:   96 LTNFYGMDLTSDKLRSLIHKWSTLIECFVDVKTTDGYFLRVFAICFTKKGESQKKKTSYAKTSRVKAIRKKMVDILTETVSSNDLKTVVDYLIGVSLNGVTTNASGFAPTLAEKIRIEGSSIFPIHNVFIRKVKVLKTPKVDAAKLSELYASSATSTIAPTEEVGTAVER 265

HSP 2 Score: 28.8758 bits (63), Expect = 1.230e-35
Identity = 11/16 (68.75%), Postives = 16/16 (100.00%), Query Frame = -1 
Query:  692 YRKIRLRAEDVQGKNV 739
            +RKI+LRAE+V+G+NV
Sbjct:   80 FRKIKLRAEEVEGRNV 95
[Close]
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_SCHJA (40S ribosomal protein S3a OS=Schistosoma japonicum GN=SJCHGC01275 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.614e-35
Identity = 75/152 (49.34%), Postives = 101/152 (66.45%), Query Frame = -3 
Query:  243 CLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERP 695
            CLTNF G++ T DKL S+V KW + IEA+VDVKTTD Y LR F I FT  +P   +   YAQ ++I++IR ++ EI+  + ++CDLK +V K I + I ++  KA   IYPL   FIRKVK+LK PK DL +LME+HG+  S   G  + RP
Sbjct:   97 CLTNFHGLELTRDKLCSVVVKWRSTIEAHVDVKTTDGYLLRFFIITFTPSVPRSERLHSYAQTTRIKRIRARLVEIIQQEVSTCDLKEVVNKLIPDSIAQDARKAASWIYPLGETFIRKVKVLKRPKADLARLMELHGESKSTAPGETVSRP 248

HSP 2 Score: 23.0978 bits (48), Expect = 4.614e-35
Identity = 8/15 (53.33%), Postives = 13/15 (86.67%), Query Frame = -1 
Query:  695 YRKIRLRAEDVQGKN 739
            +RK +L+ EDVQG++
Sbjct:   82 FRKFKLQIEDVQGRH 96
[Close]
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_TETTH (40S ribosomal protein S3a OS=Tetrahymena thermophila GN=TTHERM_00047480 PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.334e-28
Identity = 63/138 (45.65%), Postives = 90/138 (65.22%), Query Frame = -3 
Query:  285 TNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLP---NQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVH 689
            T+F+G+D T D+L S++RKW TLIEA VD KT D Y +R+F + FTK+          TCYA++SQ+R IRRK+   +  +AA   +    +  I E   ++IEK T +I+PLQN+ IRKVK+LK PK D  K+ E++
Sbjct:  101 TSFYGLDITRDRLCSMIRKWQTLIEARVDCKTNDGYIIRVFTLAFTKKTSAGKQSSTSTCYAKSSQVRAIRRKINTFITNEAAKLGIAEFSKNLIGEDYTKKIEKETKNIFPLQNITIRKVKVLKRPKLDATKIAELY 238
[Close]
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_LEIMA (40S ribosomal protein S3a OS=Leishmania major GN=LmjF35.0400 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.335e-25
Identity = 55/159 (34.59%), Postives = 89/159 (55.97%), Query Frame = -3 
Query:  216 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEPIPEAP 692
            LT F  M+ TTDK+ SL+RKW T +E  V+VKT D YT+R+F + FTK   NQ  R CYA+   ++ +R ++ +++  + +   +K  V      ++   + +    I PL+ + IRKV++++ PKFD   L+  HG     V    +R  +E +  AP
Sbjct:  100 LTQFHSMEVTTDKMASLLRKWCTTMETTVEVKTADGYTMRLFVVAFTKPQANQQSRNCYAKQRLVKWLRMRITKMIKRRLSKVQIKEAVSLLTRNVLSDALVRRCNPILPLRELRIRKVRVVRTPKFDAQALLSAHGTIPASVEAD-QREVEEAVEAAP 257

HSP 2 Score: 24.6386 bits (52), Expect = 3.335e-25
Identity = 8/16 (50.00%), Postives = 13/16 (81.25%), Query Frame = -1 
Query:  692 YRKIRLRAEDVQGKNV 739
            YRK+R   ++VQG+N+
Sbjct:   84 YRKVRFTVQEVQGRNL 99
The following BLAST results are available for this feature:
BLAST of CX296740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
RS3A_DROSE4.905e-4155.0740S ribosomal protein S3a OS=Drosophila sechellia ... [more]
RS3A_DROMO4.905e-4155.0740S ribosomal protein S3a OS=Drosophila mojavensis... [more]
RS3A_DROAN4.905e-4150.0040S ribosomal protein S3a OS=Drosophila ananassae ... [more]
RS3A_PODAN6.394e-4167.5240S ribosomal protein S1 OS=Podospora anserina GN=... [more]
RS3A_DROGR1.414e-4054.3540S ribosomal protein S3a OS=Drosophila grimshawi ... [more]
RS3A_TAESO4.274e-3648.0340S ribosomal protein S3a OS=Taenia solium PE=2 SV... [more]
RS3A_DICDI1.230e-3545.8840S ribosomal protein S3a OS=Dictyostelium discoid... [more]
RS3A_SCHJA4.614e-3549.3440S ribosomal protein S3a OS=Schistosoma japonicum... [more]
RS3A_TETTH1.334e-2845.6540S ribosomal protein S3a OS=Tetrahymena thermophi... [more]
RS3A_LEIMA3.335e-2534.5940S ribosomal protein S3a OS=Leishmania major GN=L... [more]

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Properties
Property NameValue
Genbank descriptionC05802C06SK FerrChloL1 Citrus clementina cDNA clone C05802C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296740 ID=CX296740; Name=CX296740; organism=Citrus clementina; type=EST; length=757bp
CCGAATTCGGCACGAGGCTGGAATAAAGAATAAGGTAATCATGTTCATAC
CACAGAAACCGCTGCAGCCATCTCAAATATCAGCTAGAATAAAATATGTA
AACTCAAAACAAATTTGAGTTCATCACAAACAAAACTGCCCAAAAATTAC
TAGATCTGATTGGTTATAAAGACAAACTACAAAAATTTCTTTATTCAAGC
TCCAATCACTTCAGTTGGTGCTTCAGGAATGGGCTCATCAGCTGGCCTTT
CCATCTTTACACCAACATCCTCAGAGTAATCACCATGAACCTCCATCAAC
TTTCCAAGATCAAACTTAGGAGCTTTCAAGATCTTCACTTTGCGAATGAA
AACATTTTGTAAGGGGTATATGCTTAAGGTTGCCTTCTCAATCTCTCTTC
CAATTATTTCAGCAATGAACTTTTCGACCAAGCCCTTAAGATCACAGGAT
GCTGCCTGAGCAATCATGATCTCCCTCATCTTGCGGCGAATCTGTCTAAT
CTGGCTGGCCTGTGCGTAGCAAGTCCTCTTAACCTGATTTGGAAGTCTCT
TGGTGAATCCAATGCAGAACATCCTCAATGTGTAGTTATCAGTGGTCTTG
ACATCCACGTAAGCTTCAATCAACGTATGCCACTTCCTAACCAAGGACCT
CAGCTTGTCTGTAGTGAAATCCATGCCCCAGAAGTTTGTCAAACATTCTT
CCCTTGGACATCTTCAGCTCTTAGTCTGATCTTCCTGTAGCATGCTCTTC
TTCATAT
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