CX296740

Overview
NameCX296740
Unique NameCX296740
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A2_LEIIN (40S ribosomal protein S3a-2 OS=Leishmania infantum GN=LinJ35.0510 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.335e-25
Identity = 55/159 (34.59%), Postives = 89/159 (55.97%), Query Frame = -3
Query:  216 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEPIPEAP 692
            LT F  M+ TTDK+ SL+RKW T +E  V+VKT D YT+R+F + FTK   NQ  R CYA+   ++ +R ++ +++  + +   +K  V      ++   + +    I PL+ + IRKV++++ PKFD   L+  HG     V    +R  +E +  AP
Sbjct:  100 LTQFHSMEVTTDKMASLLRKWCTTMETTVEVKTADGYTMRLFVVAFTKPQANQQSRNCYAKQRLVKWLRMRITKMIKRRLSKVQIKEAVSLLTRNVLSDALVRRCNPILPLRELRIRKVRVVRTPKFDAQALLSAHGTIPASVEAD-QREVEEAVEAAP 257          

HSP 2 Score: 24.6386 bits (52), Expect = 3.335e-25
Identity = 8/16 (50.00%), Postives = 13/16 (81.25%), Query Frame = -1
Query:  692 YRKIRLRAEDVQGKNV 739
            YRK+R   ++VQG+N+
Sbjct:   84 YRKVRFTVQEVQGRNL 99          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A1_LEIIN (40S ribosomal protein S3a-1 OS=Leishmania infantum GN=LinJ35.0500 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.335e-25
Identity = 55/159 (34.59%), Postives = 89/159 (55.97%), Query Frame = -3
Query:  216 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEPIPEAP 692
            LT F  M+ TTDK+ SL+RKW T +E  V+VKT D YT+R+F + FTK   NQ  R CYA+   ++ +R ++ +++  + +   +K  V      ++   + +    I PL+ + IRKV++++ PKFD   L+  HG     V    +R  +E +  AP
Sbjct:  100 LTQFHSMEVTTDKMASLLRKWCTTMETTVEVKTADGYTMRLFVVAFTKPQANQQSRNCYAKQRLVKWLRMRITKMIKRRLSKVQIKEAVSLLTRNVLSDALVRRCNPILPLRELRIRKVRVVRTPKFDAQALLSAHGTIPASVEAD-QREVEEAVEAAP 257          

HSP 2 Score: 24.6386 bits (52), Expect = 3.335e-25
Identity = 8/16 (50.00%), Postives = 13/16 (81.25%), Query Frame = -1
Query:  692 YRKIRLRAEDVQGKNV 739
            YRK+R   ++VQG+N+
Sbjct:   84 YRKVRFTVQEVQGRNL 99          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_LEIBR (40S ribosomal protein S3a OS=Leishmania braziliensis GN=LbrM34_V2.0430 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.245e-24
Identity = 54/159 (33.96%), Postives = 88/159 (55.35%), Query Frame = -3
Query:  216 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEPIPEAP 692
            LT F  M+ TTDK+ SL+RKW T +E  V+V+T D YT+R+F + FTK   NQ  R CYA+   ++ +R ++ +++  + +   +K  V      ++   + +    I PL+ + IRKV++++ PKFD   L+  HG     V     R  +E +  AP
Sbjct:  100 LTQFHSMEMTTDKMASLLRKWCTTMETTVEVRTADGYTMRLFVVAFTKPQANQQSRNCYAKQRLVKWLRMRVTKMIKRRLSKVQIKEAVSLLTRNVLSDALVRRCNPIVPLREMRIRKVRVVRTPKFDAQALLNAHGTIPTSVEAD-PREVEEAVEAAP 257          

HSP 2 Score: 24.6386 bits (52), Expect = 1.245e-24
Identity = 8/16 (50.00%), Postives = 13/16 (81.25%), Query Frame = -1
Query:  692 YRKIRLRAEDVQGKNV 739
            YRK+R   ++VQG+N+
Sbjct:   84 YRKVRFTVQEVQGRNL 99          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_ENCCU (40S ribosomal protein S1 OS=Encephalitozoon cuniculi GN=RPS1 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.400e-24
Identity = 50/126 (39.68%), Postives = 84/126 (66.67%), Query Frame = -3
Query:  321 ECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKA 698
            EC+  F GM+ T+DK +++++KWHTLIEA  D+   D    R+F +G T+R P  VK+TCY + S  ++IR+ M +++  + + CD++ +++K   E +G+ IE+    I+PLQN  +RKVK +K+
Sbjct:   47 ECVGFFDGMELTSDKHKAMIKKWHTLIEAQKDIVAKDGSVFRVFVMGVTRRHPGYVKKTCYVKHSDEKKIRKIMFDVIEEELSGCDVQKIMKKLANETVGKRIEELGSEIFPLQNCCVRKVKTIKS 172          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A2_TRYCR (40S ribosomal protein S3a-2 OS=Trypanosoma cruzi GN=Tc00.1047053511001.9 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.051e-24
Identity = 55/161 (34.16%), Postives = 91/161 (56.52%), Query Frame = -3
Query:  219 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY---SEDVGVKMERPADEPIPEA 692
            LT F  M+ T+D++  L+RKW T IEA V+ KT D YTLR+F I FTK+  NQ+ + CYA+   ++ +R ++  ++  + +  ++   V      I+   + K    I PL+++ IRKVK+++ P+FD   L+  HG+    +E     +E   + P  EA
Sbjct:   99 LTQFHSMEMTSDRVYFLLRKWCTTIEAAVEAKTADGYTLRLFVIAFTKKQSNQLSKNCYAKTRLVKWVRHRITNLIRQRLSKVNINEAVTLLTRNILRDRLAKRCNPIVPLRDLRIRKVKVVRTPRFDAQALLNAHGEIPASAEGEARVVEEAQEAPAAEA 259          

HSP 2 Score: 22.7126 bits (47), Expect = 6.051e-24
Identity = 7/16 (43.75%), Postives = 13/16 (81.25%), Query Frame = -1
Query:  692 YRKIRLRAEDVQGKNV 739
            YRK++   ++VQG+N+
Sbjct:   83 YRKVKFVVQEVQGRNL 98          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A1_TRYCR (40S ribosomal protein S3a-1 OS=Trypanosoma cruzi GN=Tc00.1047053503635.59 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.051e-24
Identity = 55/161 (34.16%), Postives = 91/161 (56.52%), Query Frame = -3
Query:  219 LTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY---SEDVGVKMERPADEPIPEA 692
            LT F  M+ T+D++  L+RKW T IEA V+ KT D YTLR+F I FTK+  NQ+ + CYA+   ++ +R ++  ++  + +  ++   V      I+   + K    I PL+++ IRKVK+++ P+FD   L+  HG+    +E     +E   + P  EA
Sbjct:   99 LTQFHSMEMTSDRVYFLLRKWCTTIEAAVETKTADGYTLRLFVIAFTKKQSNQLSKNCYAKTRLVKWVRHRITNLIRQRLSKVNINEAVTLLTRNILRDRLAKRCNPIVPLRDLRIRKVKVVRTPRFDAQALLNAHGEIPASAEGEARVVEEAQEAPAAEA 259          

HSP 2 Score: 22.7126 bits (47), Expect = 6.051e-24
Identity = 7/16 (43.75%), Postives = 13/16 (81.25%), Query Frame = -1
Query:  692 YRKIRLRAEDVQGKNV 739
            YRK++   ++VQG+N+
Sbjct:   83 YRKVKFVVQEVQGRNL 98          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_NOSCE (40S ribosomal protein S1 OS=Nosema ceranae (strain BRL01) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.694e-21
Identity = 52/141 (36.88%), Postives = 83/141 (58.87%), Query Frame = -3
Query:  279 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 701
            ++C+  F GM  T+DK++ ++RKWHTLIEA  D+   D   LR+F    TK+ P    +  Y + S+ ++IR+ M +++  +    DL  +++K  AE+IG+ +EK    IYPLQN  + KVK +K  K D    ME+  +
Sbjct:   96 KDCIGVFDGMHMTSDKVKGIIRKWHTLIEAEKDIVAKDGTILRVFVNAVTKKTPTCTSKRVYCKTSEEKKIRKVMFDVIEEELKGEDLNKIMKKLAAEVIGKSVEKKGSLIYPLQNCCVIKVKTVKRGK-DTSNAMEIEAN 235          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_GUITH (40S ribosomal protein S3a OS=Guillardia theta PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.001e-21
Identity = 50/133 (37.59%), Postives = 80/133 (60.15%), Query Frame = -3
Query:  324 KS*RCPREECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILK 722
            KS +    EC T F G+  T DK+ SL++KWHTLIE  V+ KT D Y L++F I  +K+  N   +T Y  +SQ R +RR++ +I+I +  + D+K  + +  +  I  +IE     I+P+  V IRK+K+++
Sbjct:   83 KSLKIFNNECFTKFHGLTLTRDKICSLIKKWHTLIEVEVNFKTKDGYFLKLFLIAQSKKPKNMKSKTVYINSSQKRALRRRITDIIIKEGINMDIKDFIHRIYSLKIYEKIEINCSKIFPIHQVNIRKIKVVE 215          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_GIALA (40S ribosomal protein S3a OS=Giardia lamblia GN=GL50803_16265 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.407e-16
Identity = 47/138 (34.06%), Postives = 74/138 (53.62%), Query Frame = -3
Query:  285 ECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVH 698
            +CLTNF GMD T  K  SL RK    I+ ++D+ TTD Y LR+F I FT R   Q ++ C+ +   IR +R  + E +  +     +  LV K     +  ++ +A   I   ++V IR+VK++K P+  +  L  +H
Sbjct:   95 KCLTNFHGMDITRHKYGSLFRKGCDCIDVFMDIPTTDGYLLRVFVIAFTDRFRFQRRKNCHVKGRVIRMMRAGIYETLHNELGKVSIPVLVTKLSNFEVNAKLTEALQKITMCRDVMIRRVKVVKRPRNTMELLSTMH 232          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_METTP (30S ribosomal protein S3Ae OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.920e-15
Identity = 48/124 (38.71%), Postives = 77/124 (62.10%), Query Frame = -3
Query:  318 TNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAP 689
            T F G + TTD +RSLV++  + I+A VDV T+D Y +R+    FT      VKR   A+A+Q++ IR   R+++I++A + DL GL+++ +   +  +I K   ++YPL+ V IRK +IL  P
Sbjct:   79 TKFIGHEMTTDYIRSLVKRRTSRIDAVVDVTTSDGYLVRVKPSCFT------VKR---ARANQVKAIREISRQVIISRAGNIDLNGLIQEVVLGKLSLDIYKDAKAVYPLRRVEIRKTEILAGP 193          
The following BLAST results are available for this feature:
BLAST of CX296740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
RS3A2_LEIIN3.335e-2534.5940S ribosomal protein S3a-2 OS=Leishmania infantum... [more]
RS3A1_LEIIN3.335e-2534.5940S ribosomal protein S3a-1 OS=Leishmania infantum... [more]
RS3A_LEIBR1.245e-2433.9640S ribosomal protein S3a OS=Leishmania braziliens... [more]
RS3A_ENCCU3.400e-2439.6840S ribosomal protein S1 OS=Encephalitozoon cunicu... [more]
RS3A2_TRYCR6.051e-2434.1640S ribosomal protein S3a-2 OS=Trypanosoma cruzi G... [more]
RS3A1_TRYCR6.051e-2434.1640S ribosomal protein S3a-1 OS=Trypanosoma cruzi G... [more]
RS3A_NOSCE2.694e-2136.8840S ribosomal protein S1 OS=Nosema ceranae (strain... [more]
RS3A_GUITH6.001e-2137.5940S ribosomal protein S3a OS=Guillardia theta PE=3... [more]
RS3A_GIALA3.407e-1634.0640S ribosomal protein S3a OS=Giardia lamblia GN=GL... [more]
RS3A_METTP4.920e-1538.7130S ribosomal protein S3Ae OS=Methanosaeta thermop... [more]

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Properties
Property NameValue
Genbank descriptionC05802C06SK FerrChloL1 Citrus clementina cDNA clone C05802C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296740 ID=CX296740; Name=CX296740; organism=Citrus clementina; type=EST; length=757bp
CCGAATTCGGCACGAGGCTGGAATAAAGAATAAGGTAATCATGTTCATAC
CACAGAAACCGCTGCAGCCATCTCAAATATCAGCTAGAATAAAATATGTA
AACTCAAAACAAATTTGAGTTCATCACAAACAAAACTGCCCAAAAATTAC
TAGATCTGATTGGTTATAAAGACAAACTACAAAAATTTCTTTATTCAAGC
TCCAATCACTTCAGTTGGTGCTTCAGGAATGGGCTCATCAGCTGGCCTTT
CCATCTTTACACCAACATCCTCAGAGTAATCACCATGAACCTCCATCAAC
TTTCCAAGATCAAACTTAGGAGCTTTCAAGATCTTCACTTTGCGAATGAA
AACATTTTGTAAGGGGTATATGCTTAAGGTTGCCTTCTCAATCTCTCTTC
CAATTATTTCAGCAATGAACTTTTCGACCAAGCCCTTAAGATCACAGGAT
GCTGCCTGAGCAATCATGATCTCCCTCATCTTGCGGCGAATCTGTCTAAT
CTGGCTGGCCTGTGCGTAGCAAGTCCTCTTAACCTGATTTGGAAGTCTCT
TGGTGAATCCAATGCAGAACATCCTCAATGTGTAGTTATCAGTGGTCTTG
ACATCCACGTAAGCTTCAATCAACGTATGCCACTTCCTAACCAAGGACCT
CAGCTTGTCTGTAGTGAAATCCATGCCCCAGAAGTTTGTCAAACATTCTT
CCCTTGGACATCTTCAGCTCTTAGTCTGATCTTCCTGTAGCATGCTCTTC
TTCATAT
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