CX296740

Overview
NameCX296740
Unique NameCX296740
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig928 contig Ccv1_Contig928:282..1039. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_ENTBH (40S ribosomal protein S1 OS=Enterocytozoon bieneusi (strain H348) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.340e-12
Identity = 44/125 (35.20%), Postives = 73/125 (58.40%), Query Frame = -3
Query:  324 CLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRL-PNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILK 695
            C + F GM+ + +K+  ++RKWHTLIEA + + T D  T R+F    TK+  P+ +K   YA+AS+I+ IR+++ E  +      +++ LV+    E + +E E     IYP+  + I KVK +K
Sbjct:  103 CNSVFNGMEVSREKITGMIRKWHTLIEANIPITTKDGSTWRVFVNAVTKKKNPDSLKH--YAKASEIKIIRKRIVETTLEHLDGIEVEKLVKVLSTEGLAKEFETRCNEIYPIFAMII-KVKPIK 224          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_ARCFU (30S ribosomal protein S3Ae OS=Archaeoglobus fulgidus GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.092e-12
Identity = 44/132 (33.33%), Postives = 68/132 (51.52%), Query Frame = -3
Query:  318 RCPREECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAP 713
            R   +   T FW  + T + L SL R+  + IE  VDV T D Y LR+  + FT R           + SQ R IR  MR+I++ +A+S +    +++ +   +  EI K    IYP++ V IRK+++L  P
Sbjct:   75 RVAGDNAYTKFWRFELTREYLNSLTRRRTSKIEDIVDVTTADGYKLRVKSVVFTVRR---------CKTSQKRAIRAIMRQIVVEKASSLNFVQFLQECVLGKVPAEIYKNAKKIYPIRRVEIRKIELLAEP 197          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_METBF (30S ribosomal protein S3Ae OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.300e-11
Identity = 43/128 (33.59%), Postives = 69/128 (53.91%), Query Frame = -3
Query:  318 TNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCY----AQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAP 689
            T+  G + TTD +RS+V++  + I+A +DVKT D Y +R             VK TC+    A++SQI+ IR  M  I+  +A+  D +  +++ I   +   I +    IYPL+ V IRK ++  AP
Sbjct:   80 TDLMGHELTTDYIRSIVKRQTSRIDANIDVKTKDGYIIR-------------VKPTCFTIKRARSSQIKAIREMMVNIVAKRASEADFETFMQEAILGRLSAAIYRQAKFIYPLRRVEIRKTQVEAAP 194          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_PYRFU (30S ribosomal protein S3Ae OS=Pyrococcus furiosus GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.310e-11
Identity = 43/129 (33.33%), Postives = 63/129 (48.84%), Query Frame = -3
Query:  315 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPK 701
            +   T F GM      +RSLVR+  T I+   ++ T D Y LR+  +    R           Q SQ R IR+ M+EI+  +A   + K  V + +   I  EI K    IYPL+   IRK+K+L+ P+
Sbjct:   76 QNAYTKFKGMKLARSYIRSLVRRKTTRIDGIFNITTKDGYKLRVMAMAIAMRR---------IQTSQERAIRKIMQEIIYKKAEELNFKDFVLESVNGKIAAEIAKEAKKIYPLRKAEIRKIKVLEEPQ 195          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_DESK1 (30S ribosomal protein S3Ae OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.310e-11
Identity = 42/127 (33.07%), Postives = 64/127 (50.39%), Query Frame = -3
Query:  318 ECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAP 698
            + LT F G +   D +RSLVR+  + I+   D+ T D Y LR+  +  T    N          SQ + IRR MRE +  +A+   L  LV++ ++  I  EI +    IYP++ V + K K+L  P
Sbjct:   77 KALTRFKGHELARDYMRSLVRRKSSKIQGIFDINTKDGYVLRVTIVALTSYRCN---------TSQKKAIRRVMREYIFKKASELTLDELVQEIMSYKISNEIAELARKIYPIRRVEVYKTKLLLIP 194          
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_METAC (30S ribosomal protein S3Ae OS=Methanosarcina acetivorans GN=rps3Ae PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.630e-11
Identity = 44/128 (34.38%), Postives = 69/128 (53.91%), Query Frame = -3
Query:  318 TNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCY----AQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAP 689
            T+  G + TTD +RS+V++  + I+A VDVKT D Y +R             VK TC+    A++SQ++ IR  M EI+  +AA  D +  +++ I   +   I +    IYPL+ V IRK ++   P
Sbjct:   80 TDLMGHELTTDYIRSIVKRQTSRIDANVDVKTKDGYVIR-------------VKPTCFTIKRARSSQMQAIREMMVEIVKKRAAESDFETFMQEAILGRLSAAIYRQAKFIYPLRRVEIRKTEVETIP 194          
The following BLAST results are available for this feature:
BLAST of CX296740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
RS3A_ENTBH1.340e-1235.2040S ribosomal protein S1 OS=Enterocytozoon bieneus... [more]
RS3A_ARCFU5.092e-1233.3330S ribosomal protein S3Ae OS=Archaeoglobus fulgid... [more]
RS3A_METBF3.300e-1133.5930S ribosomal protein S3Ae OS=Methanosarcina barke... [more]
RS3A_PYRFU4.310e-1133.3330S ribosomal protein S3Ae OS=Pyrococcus furiosus ... [more]
RS3A_DESK14.310e-1133.0730S ribosomal protein S3Ae OS=Desulfurococcus kamc... [more]
RS3A_METAC5.630e-1134.3830S ribosomal protein S3Ae OS=Methanosarcina aceti... [more]

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Properties
Property NameValue
Genbank descriptionC05802C06SK FerrChloL1 Citrus clementina cDNA clone C05802C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296740 ID=CX296740; Name=CX296740; organism=Citrus clementina; type=EST; length=757bp
CCGAATTCGGCACGAGGCTGGAATAAAGAATAAGGTAATCATGTTCATAC
CACAGAAACCGCTGCAGCCATCTCAAATATCAGCTAGAATAAAATATGTA
AACTCAAAACAAATTTGAGTTCATCACAAACAAAACTGCCCAAAAATTAC
TAGATCTGATTGGTTATAAAGACAAACTACAAAAATTTCTTTATTCAAGC
TCCAATCACTTCAGTTGGTGCTTCAGGAATGGGCTCATCAGCTGGCCTTT
CCATCTTTACACCAACATCCTCAGAGTAATCACCATGAACCTCCATCAAC
TTTCCAAGATCAAACTTAGGAGCTTTCAAGATCTTCACTTTGCGAATGAA
AACATTTTGTAAGGGGTATATGCTTAAGGTTGCCTTCTCAATCTCTCTTC
CAATTATTTCAGCAATGAACTTTTCGACCAAGCCCTTAAGATCACAGGAT
GCTGCCTGAGCAATCATGATCTCCCTCATCTTGCGGCGAATCTGTCTAAT
CTGGCTGGCCTGTGCGTAGCAAGTCCTCTTAACCTGATTTGGAAGTCTCT
TGGTGAATCCAATGCAGAACATCCTCAATGTGTAGTTATCAGTGGTCTTG
ACATCCACGTAAGCTTCAATCAACGTATGCCACTTCCTAACCAAGGACCT
CAGCTTGTCTGTAGTGAAATCCATGCCCCAGAAGTTTGTCAAACATTCTT
CCCTTGGACATCTTCAGCTCTTAGTCTGATCTTCCTGTAGCATGCTCTTC
TTCATAT
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