CX296740
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_ENTBH (40S ribosomal protein S1 OS=Enterocytozoon bieneusi (strain H348) GN=RPS1 PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.340e-12 Identity = 44/125 (35.20%), Postives = 73/125 (58.40%), Query Frame = -3 Query: 324 CLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRL-PNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILK 695 C + F GM+ + +K+ ++RKWHTLIEA + + T D T R+F TK+ P+ +K YA+AS+I+ IR+++ E + +++ LV+ E + +E E IYP+ + I KVK +K Sbjct: 103 CNSVFNGMEVSREKITGMIRKWHTLIEANIPITTKDGSTWRVFVNAVTKKKNPDSLKH--YAKASEIKIIRKRIVETTLEHLDGIEVEKLVKVLSTEGLAKEFETRCNEIYPIFAMII-KVKPIK 224
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_ARCFU (30S ribosomal protein S3Ae OS=Archaeoglobus fulgidus GN=rps3Ae PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.092e-12 Identity = 44/132 (33.33%), Postives = 68/132 (51.52%), Query Frame = -3 Query: 318 RCPREECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAP 713 R + T FW + T + L SL R+ + IE VDV T D Y LR+ + FT R + SQ R IR MR+I++ +A+S + +++ + + EI K IYP++ V IRK+++L P Sbjct: 75 RVAGDNAYTKFWRFELTREYLNSLTRRRTSKIEDIVDVTTADGYKLRVKSVVFTVRR---------CKTSQKRAIRAIMRQIVVEKASSLNFVQFLQECVLGKVPAEIYKNAKKIYPIRRVEIRKIELLAEP 197
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_METBF (30S ribosomal protein S3Ae OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.300e-11 Identity = 43/128 (33.59%), Postives = 69/128 (53.91%), Query Frame = -3 Query: 318 TNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCY----AQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAP 689 T+ G + TTD +RS+V++ + I+A +DVKT D Y +R VK TC+ A++SQI+ IR M I+ +A+ D + +++ I + I + IYPL+ V IRK ++ AP Sbjct: 80 TDLMGHELTTDYIRSIVKRQTSRIDANIDVKTKDGYIIR-------------VKPTCFTIKRARSSQIKAIREMMVNIVAKRASEADFETFMQEAILGRLSAAIYRQAKFIYPLRRVEIRKTQVEAAP 194
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_PYRFU (30S ribosomal protein S3Ae OS=Pyrococcus furiosus GN=rps3Ae PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.310e-11 Identity = 43/129 (33.33%), Postives = 63/129 (48.84%), Query Frame = -3 Query: 315 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPK 701 + T F GM +RSLVR+ T I+ ++ T D Y LR+ + R Q SQ R IR+ M+EI+ +A + K V + + I EI K IYPL+ IRK+K+L+ P+ Sbjct: 76 QNAYTKFKGMKLARSYIRSLVRRKTTRIDGIFNITTKDGYKLRVMAMAIAMRR---------IQTSQERAIRKIMQEIIYKKAEELNFKDFVLESVNGKIAAEIAKEAKKIYPLRKAEIRKIKVLEEPQ 195
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_DESK1 (30S ribosomal protein S3Ae OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.310e-11 Identity = 42/127 (33.07%), Postives = 64/127 (50.39%), Query Frame = -3 Query: 318 ECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAP 698 + LT F G + D +RSLVR+ + I+ D+ T D Y LR+ + T N SQ + IRR MRE + +A+ L LV++ ++ I EI + IYP++ V + K K+L P Sbjct: 77 KALTRFKGHELARDYMRSLVRRKSSKIQGIFDINTKDGYVLRVTIVALTSYRCN---------TSQKKAIRRVMREYIFKKASELTLDELVQEIMSYKISNEIAELARKIYPIRRVEVYKTKLLLIP 194
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_METAC (30S ribosomal protein S3Ae OS=Methanosarcina acetivorans GN=rps3Ae PE=3 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 5.630e-11 Identity = 44/128 (34.38%), Postives = 69/128 (53.91%), Query Frame = -3 Query: 318 TNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCY----AQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAP 689 T+ G + TTD +RS+V++ + I+A VDVKT D Y +R VK TC+ A++SQ++ IR M EI+ +AA D + +++ I + I + IYPL+ V IRK ++ P Sbjct: 80 TDLMGHELTTDYIRSIVKRQTSRIDANVDVKTKDGYVIR-------------VKPTCFTIKRARSSQMQAIREMMVEIVKKRAAESDFETFMQEAILGRLSAAIYRQAKFIYPLRRVEIRKTEVETIP 194 The following BLAST results are available for this feature:
BLAST of CX296740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 166
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296740 ID=CX296740; Name=CX296740; organism=Citrus clementina; type=EST; length=757bpback to top |