CX296740

Overview
NameCX296740
Unique NameCX296740
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig928 contig Ccv1_Contig928:282..1039. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_ASPOR (40S ribosomal protein S1 OS=Aspergillus oryzae GN=rps1 PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 7.650e-55
Identity = 106/162 (65.43%), Postives = 127/162 (78.40%), Query Frame = -3 
Query:  219 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERPADEPIPEA 701
            + CLTNF G+DFTTDKLRSLVRKW +LIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+KM EIM  +AASC L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+  ++D G K+ER   E + E+
Sbjct:   94 KNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMTEIMQREAASCTLSQLTTKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESTTDDKGHKVEREFKEQVLES 255

HSP 2 Score: 26.1794 bits (56), Expect = 7.650e-55
Identity = 8/15 (53.33%), Postives = 14/15 (93.33%), Query Frame = -1 
Query:  695 YRKIRLRAEDVQGKN 739
            +RK++LR +++QGKN
Sbjct:   81 FRKVKLRVDEIQGKN 95
[Close]
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_ASPFN (40S ribosomal protein S1 OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=rps1 PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 7.650e-55
Identity = 106/162 (65.43%), Postives = 127/162 (78.40%), Query Frame = -3 
Query:  219 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERPADEPIPEA 701
            + CLTNF G+DFTTDKLRSLVRKW +LIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+KM EIM  +AASC L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+  ++D G K+ER   E + E+
Sbjct:   94 KNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMTEIMQREAASCTLSQLTTKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESTTDDKGHKVEREFKEQVLES 255

HSP 2 Score: 26.1794 bits (56), Expect = 7.650e-55
Identity = 8/15 (53.33%), Postives = 14/15 (93.33%), Query Frame = -1 
Query:  695 YRKIRLRAEDVQGKN 739
            +RK++LR +++QGKN
Sbjct:   81 FRKVKLRVDEIQGKN 95
[Close]
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_NEOFI (40S ribosomal protein S1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=rps1 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.650e-55
Identity = 106/162 (65.43%), Postives = 127/162 (78.40%), Query Frame = -3 
Query:  219 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERPADEPIPEA 701
            + CLTNF G+DFTTDKLRSLVRKW +LIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+KM EIM  +AASC L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+  ++D G K+ER   E + E+
Sbjct:   94 KNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMIEIMQREAASCSLAQLTHKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESTTDDKGHKVEREFKEQVLES 255

HSP 2 Score: 26.5646 bits (57), Expect = 7.650e-55
Identity = 9/15 (60.00%), Postives = 14/15 (93.33%), Query Frame = -1 
Query:  695 YRKIRLRAEDVQGKN 739
            +RK++LR ++VQGKN
Sbjct:   81 FRKVKLRVDEVQGKN 95
[Close]
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_ASPFU (40S ribosomal protein S1 OS=Aspergillus fumigatus GN=rps1 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.650e-55
Identity = 106/162 (65.43%), Postives = 127/162 (78.40%), Query Frame = -3 
Query:  219 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERPADEPIPEA 701
            + CLTNF G+DFTTDKLRSLVRKW +LIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+KM EIM  +AASC L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+  ++D G K+ER   E + E+
Sbjct:   94 KNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMIEIMQREAASCSLAQLTHKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESTTDDKGHKVEREFKEQVLES 255

HSP 2 Score: 26.5646 bits (57), Expect = 7.650e-55
Identity = 9/15 (60.00%), Postives = 14/15 (93.33%), Query Frame = -1 
Query:  695 YRKIRLRAEDVQGKN 739
            +RK++LR ++VQGKN
Sbjct:   81 FRKVKLRVDEVQGKN 95
[Close]
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_ASPFC (40S ribosomal protein S1 OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=rps1 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.650e-55
Identity = 106/162 (65.43%), Postives = 127/162 (78.40%), Query Frame = -3 
Query:  219 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERPADEPIPEA 701
            + CLTNF G+DFTTDKLRSLVRKW +LIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+KM EIM  +AASC L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+  ++D G K+ER   E + E+
Sbjct:   94 KNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMIEIMQREAASCSLAQLTHKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESTTDDKGHKVEREFKEQVLES 255

HSP 2 Score: 26.5646 bits (57), Expect = 7.650e-55
Identity = 9/15 (60.00%), Postives = 14/15 (93.33%), Query Frame = -1 
Query:  695 YRKIRLRAEDVQGKN 739
            +RK++LR ++VQGKN
Sbjct:   81 FRKVKLRVDEVQGKN 95
[Close]
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_ASPTN (40S ribosomal protein S1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=rps1 PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.695e-54
Identity = 105/162 (64.81%), Postives = 127/162 (78.40%), Query Frame = -3 
Query:  219 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERPADEPIPEA 701
            + CLTNF G+DFTTDKLRSLVRKW +LIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+KM EIM  +AASC L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+  ++D G K+ER   E + E+
Sbjct:   94 KNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMTEIMQREAASCSLAQLTTKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKSPKFDLGALLNLHGESTTDDKGHKVEREFKEQVLES 255

HSP 2 Score: 26.1794 bits (56), Expect = 1.695e-54
Identity = 8/15 (53.33%), Postives = 14/15 (93.33%), Query Frame = -1 
Query:  695 YRKIRLRAEDVQGKN 739
            +RK++LR +++QGKN
Sbjct:   81 FRKVKLRVDEIQGKN 95
[Close]
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_ASPNC (40S ribosomal protein S1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=rps1 PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.695e-54
Identity = 105/162 (64.81%), Postives = 127/162 (78.40%), Query Frame = -3 
Query:  219 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERPADEPIPEA 701
            + CLTNF G+DFTTDKLRSLVRKW +LIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+KM EIM  +AASC L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+  ++D G K+ER   E + E+
Sbjct:   94 KNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMTEIMQREAASCSLAQLTTKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKSPKFDLGALLNLHGESTTDDKGHKVEREFKEQVLES 255

HSP 2 Score: 26.1794 bits (56), Expect = 1.695e-54
Identity = 8/15 (53.33%), Postives = 14/15 (93.33%), Query Frame = -1 
Query:  695 YRKIRLRAEDVQGKN 739
            +RK++LR +++QGKN
Sbjct:   81 FRKVKLRVDEIQGKN 95
[Close]
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_PHANO (40S ribosomal protein S1 OS=Phaeosphaeria nodorum GN=RPS1 PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.881e-54
Identity = 104/159 (65.41%), Postives = 125/159 (78.62%), Query Frame = -3 
Query:  228 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPI 701
            + CLTNF G+DFT+DKLRSLVRKW TLIEA V VKTTD+Y LR+F IGFTKR PNQ+K+T YA +SQIR IR+KM EIM   A+SC L  L +K I E+IGREIEK+T  IYPLQNV +RKVK+LKAPKFDLG L+ +HG+ S +D G K+ER   E +
Sbjct:   93 KNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVVVKTTDDYLLRLFAIGFTKRRPNQIKKTTYAASSQIRAIRKKMVEIMTRDASSCTLAQLTQKLIPEVIGREIEKSTQGIYPLQNVHVRKVKLLKAPKFDLGALLGLHGESSADDSGQKVEREFKETV 251

HSP 2 Score: 26.5646 bits (57), Expect = 2.881e-54
Identity = 9/15 (60.00%), Postives = 14/15 (93.33%), Query Frame = -1 
Query:  695 YRKIRLRAEDVQGKN 739
            +RK++LR ++VQGKN
Sbjct:   80 FRKVKLRVDEVQGKN 94
[Close]
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_NEUCR (40S ribosomal protein S1 OS=Neurospora crassa GN=crp-8 PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.755e-54
Identity = 105/162 (64.81%), Postives = 125/162 (77.16%), Query Frame = -3 
Query:  219 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SEDVGVKMERPADEPIPEA 701
            + CLTNF G+DFT+DKLRSLVRKW TLIEA + VKTTD+Y LR+F I FTKR PNQVK+T YA +SQIR IRRKM EI+  +A+SC L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LK PKFDLG LM +HG+  S++ G K+ER   E + E+
Sbjct:   94 KNCLTNFHGLDFTSDKLRSLVRKWQTLIEANITVKTTDDYLLRLFAIAFTKRRPNQVKKTTYAASSQIRAIRRKMTEIIQREASSCTLTQLTSKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKQPKFDLGALMSLHGESGSDEAGQKVEREFKETVLES 255

HSP 2 Score: 26.1794 bits (56), Expect = 3.755e-54
Identity = 8/15 (53.33%), Postives = 14/15 (93.33%), Query Frame = -1 
Query:  695 YRKIRLRAEDVQGKN 739
            +RK++LR +++QGKN
Sbjct:   81 FRKVKLRVDEIQGKN 95
[Close]
BLAST of CX296740 vs. ExPASy Swiss-Prot
Match: RS3A_EMENI (40S ribosomal protein S1 OS=Emericella nidulans GN=rps1 PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 8.319e-54
Identity = 103/162 (63.58%), Postives = 127/162 (78.40%), Query Frame = -3 
Query:  219 EECLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERPADEPIPEA 701
            + CLTNF G+DFTTDKLRSLVRKW +LIEA V VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+KM EIM  +A+SC L  L  K I E+IGREIEKAT  IYPLQ+V IRKVK+LK+PKFDLG L+ +HG+  ++D G K+ER   E + E+
Sbjct:   94 KNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMTEIMQREASSCSLAQLTSKLIPEVIGREIEKATQGIYPLQHVHIRKVKLLKSPKFDLGALLNLHGESTTDDKGQKVEREFKEQVLES 255

HSP 2 Score: 26.1794 bits (56), Expect = 8.319e-54
Identity = 8/15 (53.33%), Postives = 14/15 (93.33%), Query Frame = -1 
Query:  695 YRKIRLRAEDVQGKN 739
            +RK++LR +++QGKN
Sbjct:   81 FRKVKLRVDEIQGKN 95
The following BLAST results are available for this feature:
BLAST of CX296740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
RS3A_ASPOR7.650e-5565.4340S ribosomal protein S1 OS=Aspergillus oryzae GN=... [more]
RS3A_ASPFN7.650e-5565.4340S ribosomal protein S1 OS=Aspergillus flavus (st... [more]
RS3A_NEOFI7.650e-5565.4340S ribosomal protein S1 OS=Neosartorya fischeri (... [more]
RS3A_ASPFU7.650e-5565.4340S ribosomal protein S1 OS=Aspergillus fumigatus ... [more]
RS3A_ASPFC7.650e-5565.4340S ribosomal protein S1 OS=Aspergillus fumigatus ... [more]
RS3A_ASPTN1.695e-5464.8140S ribosomal protein S1 OS=Aspergillus terreus (s... [more]
RS3A_ASPNC1.695e-5464.8140S ribosomal protein S1 OS=Aspergillus niger (str... [more]
RS3A_PHANO2.881e-5465.4140S ribosomal protein S1 OS=Phaeosphaeria nodorum ... [more]
RS3A_NEUCR3.755e-5464.8140S ribosomal protein S1 OS=Neurospora crassa GN=c... [more]
RS3A_EMENI8.319e-5463.5840S ribosomal protein S1 OS=Emericella nidulans GN... [more]

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Properties
Property NameValue
Genbank descriptionC05802C06SK FerrChloL1 Citrus clementina cDNA clone C05802C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296740 ID=CX296740; Name=CX296740; organism=Citrus clementina; type=EST; length=757bp
CCGAATTCGGCACGAGGCTGGAATAAAGAATAAGGTAATCATGTTCATAC
CACAGAAACCGCTGCAGCCATCTCAAATATCAGCTAGAATAAAATATGTA
AACTCAAAACAAATTTGAGTTCATCACAAACAAAACTGCCCAAAAATTAC
TAGATCTGATTGGTTATAAAGACAAACTACAAAAATTTCTTTATTCAAGC
TCCAATCACTTCAGTTGGTGCTTCAGGAATGGGCTCATCAGCTGGCCTTT
CCATCTTTACACCAACATCCTCAGAGTAATCACCATGAACCTCCATCAAC
TTTCCAAGATCAAACTTAGGAGCTTTCAAGATCTTCACTTTGCGAATGAA
AACATTTTGTAAGGGGTATATGCTTAAGGTTGCCTTCTCAATCTCTCTTC
CAATTATTTCAGCAATGAACTTTTCGACCAAGCCCTTAAGATCACAGGAT
GCTGCCTGAGCAATCATGATCTCCCTCATCTTGCGGCGAATCTGTCTAAT
CTGGCTGGCCTGTGCGTAGCAAGTCCTCTTAACCTGATTTGGAAGTCTCT
TGGTGAATCCAATGCAGAACATCCTCAATGTGTAGTTATCAGTGGTCTTG
ACATCCACGTAAGCTTCAATCAACGTATGCCACTTCCTAACCAAGGACCT
CAGCTTGTCTGTAGTGAAATCCATGCCCCAGAAGTTTGTCAAACATTCTT
CCCTTGGACATCTTCAGCTCTTAGTCTGATCTTCCTGTAGCATGCTCTTC
TTCATAT
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