CX296746

Overview
NameCX296746
Unique NameCX296746
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3120 contig Ccv1_Contig3120:1..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296746 vs. ExPASy Swiss-Prot
Match: PSAD_PORPU (Photosystem I reaction center subunit II OS=Porphyra purpurea GN=psaD PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.856e-48
Identity = 94/140 (67.14%), Postives = 105/140 (75.00%), Query Frame = 2
Query:  269 PPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIK-YQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIEVKFTGKAVYD 685
            P  ++ N PSP FGGSTGG LR A+VEE Y ITW    E  FEMPTGG A MR G NLL LA+KEQCLALGT+L+ K+KI  Y+ YRVFPNGEVQYLHPKDGV+PEKVN GR  +     SIGKNV+PI VKFT KA YD
Sbjct:    2 PDTINLNMPSPTFGGSTGGWLRAAEVEEKYAITWTGKNESKFEMPTGGTATMRDGENLLYLAKKEQCLALGTQLKGKFKISDYKIYRVFPNGEVQYLHPKDGVFPEKVNAGRASINSVDHSIGKNVNPINVKFTNKATYD 141          
BLAST of CX296746 vs. ExPASy Swiss-Prot
Match: PSAD_PORYE (Photosystem I reaction center subunit II OS=Porphyra yezoensis GN=psaD PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.365e-47
Identity = 92/140 (65.71%), Postives = 106/140 (75.71%), Query Frame = 2
Query:  269 PPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIK-YQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIEVKFTGKAVYD 685
            P  ++ N PSP FGGSTGG LR A+VEE Y ITW    E  FEMPTGG A MR G NLL LA+KEQCLALGT+L+SK+KI  Y+ YRVFPNGEVQYLHPKDGV+PEKVN GR  V     SIG+N++P++VKF  KA YD
Sbjct:    2 PDTINLNMPSPTFGGSTGGWLRAAEVEEKYAITWTGKNESKFEMPTGGTATMRNGENLLYLAKKEQCLALGTQLKSKFKISDYKIYRVFPNGEVQYLHPKDGVFPEKVNTGRASVNSVDHSIGQNINPVDVKFMNKATYD 141          
BLAST of CX296746 vs. ExPASy Swiss-Prot
Match: PSAD_MASLA (Photosystem I reaction center subunit II OS=Mastigocladus laminosus GN=psaD PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.279e-46
Identity = 88/130 (67.69%), Postives = 104/130 (80.00%), Query Frame = 2
Query:  296 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIEVKFTGKAVYD 685
            +PIFGGSTGGLL+KA+VEE Y ITW SPKEQ+FEMPTGGAA MRQG NLL LARKEQC+ALG++LR      Y+ YR++PNGE  Y+HP DGV+PEKVNPGRQ V  N R IG+N  P ++KF+G A YD
Sbjct:    9 TPIFGGSTGGLLKKAEVEEKYAITWTSPKEQVFEMPTGGAAKMRQGQNLLYLARKEQCIALGSQLRRLKITDYKIYRIYPNGETAYIHPADGVFPEKVNPGRQKVRYNDRRIGQNPDPAKLKFSGVATYD 138          
BLAST of CX296746 vs. ExPASy Swiss-Prot
Match: PSAD_ODOSI (Photosystem I reaction center subunit II OS=Odontella sinensis GN=psaD PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.181e-46
Identity = 92/136 (67.65%), Postives = 104/136 (76.47%), Query Frame = 2
Query:  278 LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIEVKFTGKAVYD 685
            L+  TP P FGGSTGG LR A+VEE Y ITW S KEQIFEMPTGGAAIMR G NLL LARKEQCLALGT+LR+     Y+ YR+FP+GEVQYLHPKDGV+PEKVNPGR  V     SIGKN +P  +KF+G   Y+
Sbjct:    3 LNLQTPFPTFGGSTGGWLRAAEVEEKYAITWTSKKEQIFEMPTGGAAIMRNGENLLYLARKEQCLALGTQLRTFKINDYKIYRIFPSGEVQYLHPKDGVFPEKVNPGRTSVNSRGFSIGKNPNPASIKFSGITTYE 138          
BLAST of CX296746 vs. ExPASy Swiss-Prot
Match: PSAD_SKECO (Photosystem I reaction center subunit II OS=Skeletonema costatum GN=psaD PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.412e-45
Identity = 90/136 (66.18%), Postives = 103/136 (75.74%), Query Frame = 2
Query:  278 LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIEVKFTGKAVYD 685
            L+  TP P FGGSTGG LR A+VEE Y ITW S KEQIFEMPTGG+AIMR G NLL LARKEQCLAL T+LR+     Y+ YR+FP+GEVQYLHPKDGV+PEKVNPGR  V     SIGKN +P  +KF+G   Y+
Sbjct:    3 LNLKTPFPTFGGSTGGWLRAAEVEEKYAITWTSAKEQIFEMPTGGSAIMRNGENLLYLARKEQCLALSTQLRTFKINDYKIYRIFPSGEVQYLHPKDGVFPEKVNPGRTSVNSRGFSIGKNPNPASIKFSGITTYE 138          
BLAST of CX296746 vs. ExPASy Swiss-Prot
Match: PSAD_SYNY3 (Photosystem I reaction center subunit II OS=Synechocystis sp. (strain PCC 6803) GN=psaD PE=1 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 4.114e-45
Identity = 88/133 (66.17%), Postives = 104/133 (78.20%), Query Frame = 2
Query:  299 PIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIK---YQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIEVKFTGKAVYDL 688
            P FGGSTGGLL KA  EE Y ITW S  EQ+FEMPTGGAAIM +G NLL LARKEQCLALGT+LR+K+K K   Y+ YRV+P+GEVQYLHP DGV+PEKVN GR+  G   R IG+N  P+ +KF+GKA Y++
Sbjct:    9 PKFGGSTGGLLSKANREEKYAITWTSASEQVFEMPTGGAAIMNEGENLLYLARKEQCLALGTQLRTKFKPKIQDYKIYRVYPSGEVQYLHPADGVFPEKVNEGREAQGTKTRRIGQNPEPVTIKFSGKAPYEV 141          
BLAST of CX296746 vs. ExPASy Swiss-Prot
Match: PSAD_SYNP6 (Photosystem I reaction center subunit II OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=psaD PE=1 SV=3)

HSP 1 Score: 169.474 bits (428), Expect = 1.618e-41
Identity = 82/132 (62.12%), Postives = 99/132 (75.00%), Query Frame = 2
Query:  296 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIK---YQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIEVKFTGKAVY 682
            +P+FGGSTGGLL+ A+ EE Y ITW S KEQ+FE+PTGGAA+M +G NLL  ARKEQ LALGT+LR+K+K K   Y+ YR FP  +V YLHPKDGV+PEKVN GR   G   R IG+N +P  +KFTGK  Y
Sbjct:    9 TPVFGGSTGGLLKSAETEEKYAITWTSTKEQVFELPTGGAAVMHEGDNLLYFARKEQALALGTQLRTKFKPKIESYKIYRFFPGADVGYLHPKDGVFPEKVNEGRSFAGKVDRRIGQNPNPATIKFTGKQPY 140          
BLAST of CX296746 vs. ExPASy Swiss-Prot
Match: PSAD_CYACA (Photosystem I reaction center subunit II OS=Cyanidium caldarium GN=psaD PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.147e-41
Identity = 80/136 (58.82%), Postives = 102/136 (75.00%), Query Frame = 2
Query:  278 LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKI-KYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIEVKFTGKAVY 682
            L+   PSP F G+TGG LR + +EE Y ITW S  E IFE+PTGG A M+ G NLL LA+KEQCLALG +L+ K+KI  ++ YR+FPNGE Q+LHPKDGV+PEKVN GR+ +G    +IGKN++P EVKFT K ++
Sbjct:    5 LNLKMPSPEFYGNTGGWLRSSDIEEKYAITWSSKNEDIFEIPTGGVAKMKAGDNLLYLAKKEQCLALGNQLKIKFKILNFKIYRIFPNGEAQFLHPKDGVFPEKVNEGRKPIGKIDHNIGKNLNPAEVKFTHKTIF 140          
BLAST of CX296746 vs. ExPASy Swiss-Prot
Match: PSAD_NOSS8 (Photosystem I reaction center subunit II OS=Nostoc sp. (strain PCC 8009) GN=psaD PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.789e-40
Identity = 83/131 (63.36%), Postives = 100/131 (76.34%), Query Frame = 2
Query:  296 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIK-YQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIEVKFTGKAVYD 685
            +P+F GSTGGLL KA VEE Y ITW SPK Q+FE+PTGGAA M QG NLL LARKEQ +ALG +LR K+KI  Y+ YR+FPNGE  ++HP DGV+PEKVN GR+ V    R IG+N SP ++KF+GK  YD
Sbjct:    8 TPLFAGSTGGLLTKANVEEKYAITWTSPKAQVFELPTGGAATMNQGENLLYLARKEQGIALGGQLR-KFKITDYKIYRIFPNGETTFIHPADGVFPEKVNEGREKVRFVPRRIGQNPSPAQLKFSGKYTYD 137          
BLAST of CX296746 vs. ExPASy Swiss-Prot
Match: PSAD_ANAVT (Photosystem I reaction center subunit II OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=psaD PE=1 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 2.336e-40
Identity = 81/131 (61.83%), Postives = 101/131 (77.10%), Query Frame = 2
Query:  296 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKI-KYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIEVKFTGKAVYD 685
            +P+F GSTGGLL KA  EE Y ITW SPK Q+FE+PTGGAA M +G NLL +ARKE  +ALG +LR K+KI  Y+ YR+ P+GE  ++HP DGV+PEKVNPGR+ V  N RSIG+N +P +VKF+GKA YD
Sbjct:    9 TPLFAGSTGGLLTKAVEEEKYAITWTSPKAQVFELPTGGAATMHEGENLLYIARKEYGIALGGQLR-KFKITNYKIYRILPSGETTFIHPADGVFPEKVNPGREKVRFNARSIGENPNPSQVKFSGKATYD 138          
The following BLAST results are available for this feature:
BLAST of CX296746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
PSAD_PORPU8.856e-4867.14Photosystem I reaction center subunit II OS=Porphy... [more]
PSAD_PORYE3.365e-4765.71Photosystem I reaction center subunit II OS=Porphy... [more]
PSAD_MASLA1.279e-4667.69Photosystem I reaction center subunit II OS=Mastig... [more]
PSAD_ODOSI2.181e-4667.65Photosystem I reaction center subunit II OS=Odonte... [more]
PSAD_SKECO2.412e-4566.18Photosystem I reaction center subunit II OS=Skelet... [more]
PSAD_SYNY34.114e-4566.17Photosystem I reaction center subunit II OS=Synech... [more]
PSAD_SYNP61.618e-4162.12Photosystem I reaction center subunit II OS=Synech... [more]
PSAD_CYACA6.147e-4158.82Photosystem I reaction center subunit II OS=Cyanid... [more]
PSAD_NOSS81.789e-4063.36Photosystem I reaction center subunit II OS=Nostoc... [more]
PSAD_ANAVT2.336e-4061.83Photosystem I reaction center subunit II OS=Anabae... [more]

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Properties
Property NameValue
Genbank descriptionC05802C12SK FerrChloL1 Citrus clementina cDNA clone C05802C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296746 ID=CX296746; Name=CX296746; organism=Citrus clementina; type=EST; length=709bp
CCGAATTCGGCACGAGGCAAGAACACATCCTCCCCTGCTAACTCGAAAAT
CTACAATTTCCATGGCAACCCAAGCAGGCCTCTTTACCCCAAGTATTATC
ACCACCAAAACAAGCAAGCTTCTTTTGAACCCATGGAAGCCAACCTCATC
CTTTTCATTCACCAGTCCCAAACCCCTCACCTTCTCCATGGCTCAAAGAA
CCGTCAGAGCCGCAGCCGCCGAAGAAAAAACCGAAGCACCCACGAAGGAG
GCTCCAGTAGGCTTCACCCCACCGCAGCTAGACCCAAACACCCCATCCCC
AATCTTCGGAGGAAGCACTGGGGGATTGTTGAGAAAGGCCCAAGTTGAAG
AATTCTATGTCATCACATGGGAGTCGCCAAAGGAACAAATCTTTGAGATG
CCGACTGGTGGAGCTGCCATTATGAGGCAAGGTCCTAACTTGCTTAAGTT
GGCTAGGAAAGAACAGTGCTTGGCTCTTGGTACTAGATTGAGATCAAAGT
ACAAGATCAAGTACCAGTTTTACAGGGTCTTTCCTAATGGTGAGGTTCAA
TATCTTCACCCCAAGGATGGAGTTTATCCTGAAAAAGTGAACCCTGGTCG
CCAGGGAGTGGGAGTGAATTACAGATCAATTGGGAAGAATGTCAGTCCCA
TCGAGGTTAAGTTCACTGGGAAAGCAGTCTATGACTTGTGAGATGCAGAT
GATTGTTTA
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