CX296746

Overview
NameCX296746
Unique NameCX296746
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3120 contig Ccv1_Contig3120:1..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296746 vs. ExPASy Swiss-Prot
Match: PSAD_THEVL (Photosystem I reaction center subunit II OS=Thermosynechococcus vulcanus GN=psaD PE=1 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 6.796e-40
Identity = 79/130 (60.77%), Postives = 97/130 (74.62%), Query Frame = 2
Query:  299 PIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGT-RLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIEVKFTGKAVYD 685
            P++GGSTGGLL  A  EE Y ITW SPKEQ+FEMPT GAA+MR+G NL+  ARKEQCLAL   +LR +    Y+ YR+FP+GE   +HPKDGV+PEKVN GR+ V    RSIG+N +P ++KFTGK  YD
Sbjct:    9 PLYGGSTGGLLSAADTEEKYAITWTSPKEQVFEMPTAGAAVMREGENLVYFARKEQCLALAAQQLRPRKINDYKIYRIFPDGETVLIHPKDGVFPEKVNKGREAVNSVPRSIGQNPNPSQLKFTGKKPYD 138          
BLAST of CX296746 vs. ExPASy Swiss-Prot
Match: PSAD_THEEB (Photosystem I reaction center subunit II OS=Thermosynechococcus elongatus (strain BP-1) GN=psaD PE=1 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 6.796e-40
Identity = 79/130 (60.77%), Postives = 97/130 (74.62%), Query Frame = 2
Query:  299 PIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGT-RLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIEVKFTGKAVYD 685
            P++GGSTGGLL  A  EE Y ITW SPKEQ+FEMPT GAA+MR+G NL+  ARKEQCLAL   +LR +    Y+ YR+FP+GE   +HPKDGV+PEKVN GR+ V    RSIG+N +P ++KFTGK  YD
Sbjct:    9 PLYGGSTGGLLSAADTEEKYAITWTSPKEQVFEMPTAGAAVMREGENLVYFARKEQCLALAAQQLRPRKINDYKIYRIFPDGETVLIHPKDGVFPEKVNKGREAVNSVPRSIGQNPNPSQLKFTGKKPYD 138          
BLAST of CX296746 vs. ExPASy Swiss-Prot
Match: PSAD_SYNEN (Photosystem I reaction center subunit II OS=Synechococcus elongatus naegeli GN=psaD PE=1 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 6.796e-40
Identity = 79/130 (60.77%), Postives = 97/130 (74.62%), Query Frame = 2
Query:  299 PIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGT-RLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIEVKFTGKAVYD 685
            P++GGSTGGLL  A  EE Y ITW SPKEQ+FEMPT GAA+MR+G NL+  ARKEQCLAL   +LR +    Y+ YR+FP+GE   +HPKDGV+PEKVN GR+ V    RSIG+N +P ++KFTGK  YD
Sbjct:    9 PLYGGSTGGLLSAADTEEKYAITWTSPKEQVFEMPTAGAAVMREGENLVYFARKEQCLALAAQQLRPRKINDYKIYRIFPDGETVLIHPKDGVFPEKVNKGREAVNSVPRSIGQNPNPSQLKFTGKKPYD 138          
BLAST of CX296746 vs. ExPASy Swiss-Prot
Match: PSAD_ANASP (Photosystem I reaction center subunit II OS=Anabaena sp. (strain PCC 7120) GN=psaD PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.977e-39
Identity = 80/131 (61.07%), Postives = 100/131 (76.34%), Query Frame = 2
Query:  296 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKI-KYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIEVKFTGKAVYD 685
            +P+F GSTGGLL KA  EE Y ITW SPK Q+FE+PTGGAA M +G NLL +ARKE  +ALG +LR K+KI  Y+ YR+ P+GE  ++HP DGV+PEKVN GR+ V  N RSIG+N +P +VKF+GKA YD
Sbjct:    9 TPLFAGSTGGLLTKAVEEEKYAITWTSPKAQVFELPTGGAATMHEGENLLYIARKEYGIALGGQLR-KFKITNYKIYRILPSGETTFIHPADGVFPEKVNAGREKVRFNARSIGENPNPSQVKFSGKATYD 138          
BLAST of CX296746 vs. ExPASy Swiss-Prot
Match: PSAD_FREDI (Photosystem I reaction center subunit II OS=Fremyella diplosiphon GN=psaD PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.871e-38
Identity = 79/131 (60.31%), Postives = 98/131 (74.81%), Query Frame = 2
Query:  296 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIK-YQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIEVKFTGKAVYD 685
            +P+F GSTGGLL+KA+VEE Y ITW SPK Q+FE+PTGGAA M+QG NLL LARKE  +ALG +LR K+KI  Y+ YR+ P GE   +HP DGV+PEKVN GR+ V    R IG+N +P  +KF+GK  YD
Sbjct:    8 TPLFAGSTGGLLKKAEVEEKYAITWTSPKAQVFELPTGGAATMQQGQNLLYLARKEYGIALGGQLR-KFKITDYKIYRILPGGETTLIHPADGVFPEKVNAGREKVRFVPRRIGENPNPSAIKFSGKYTYD 137          
BLAST of CX296746 vs. ExPASy Swiss-Prot
Match: PSAD_GLOVI (Photosystem I reaction center subunit II OS=Gloeobacter violaceus GN=psaD PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.085e-37
Identity = 79/132 (59.85%), Postives = 98/132 (74.24%), Query Frame = 2
Query:  296 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIK-YQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIEVKFTGKAVYDL 688
            +P+FGGSTGGLLRKAQ+EE Y+I W S +EQ+FEMPTGGAA M  G N+L LARKEQC AL  +L S +KI+  + YRV+PNGE   + P DGV  EK NPGR+ VG   R IG N +P++VKFTGK  +D+
Sbjct:   13 TPLFGGSTGGLLRKAQIEEKYLIVWNSKEEQVFEMPTGGAATMVAGTNVLYLARKEQCHALHRQLVSTFKIRDSKIYRVYPNGEQVLIFPMDGVPSEKSNPGREVVGYVPRKIGDNPNPVDVKFTGKETFDV 144          
The following BLAST results are available for this feature:
BLAST of CX296746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
PSAD_THEVL6.796e-4060.77Photosystem I reaction center subunit II OS=Thermo... [more]
PSAD_THEEB6.796e-4060.77Photosystem I reaction center subunit II OS=Thermo... [more]
PSAD_SYNEN6.796e-4060.77Photosystem I reaction center subunit II OS=Synech... [more]
PSAD_ANASP1.977e-3961.07Photosystem I reaction center subunit II OS=Anabae... [more]
PSAD_FREDI4.871e-3860.31Photosystem I reaction center subunit II OS=Fremye... [more]
PSAD_GLOVI1.085e-3759.85Photosystem I reaction center subunit II OS=Gloeob... [more]

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Properties
Property NameValue
Genbank descriptionC05802C12SK FerrChloL1 Citrus clementina cDNA clone C05802C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296746 ID=CX296746; Name=CX296746; organism=Citrus clementina; type=EST; length=709bp
CCGAATTCGGCACGAGGCAAGAACACATCCTCCCCTGCTAACTCGAAAAT
CTACAATTTCCATGGCAACCCAAGCAGGCCTCTTTACCCCAAGTATTATC
ACCACCAAAACAAGCAAGCTTCTTTTGAACCCATGGAAGCCAACCTCATC
CTTTTCATTCACCAGTCCCAAACCCCTCACCTTCTCCATGGCTCAAAGAA
CCGTCAGAGCCGCAGCCGCCGAAGAAAAAACCGAAGCACCCACGAAGGAG
GCTCCAGTAGGCTTCACCCCACCGCAGCTAGACCCAAACACCCCATCCCC
AATCTTCGGAGGAAGCACTGGGGGATTGTTGAGAAAGGCCCAAGTTGAAG
AATTCTATGTCATCACATGGGAGTCGCCAAAGGAACAAATCTTTGAGATG
CCGACTGGTGGAGCTGCCATTATGAGGCAAGGTCCTAACTTGCTTAAGTT
GGCTAGGAAAGAACAGTGCTTGGCTCTTGGTACTAGATTGAGATCAAAGT
ACAAGATCAAGTACCAGTTTTACAGGGTCTTTCCTAATGGTGAGGTTCAA
TATCTTCACCCCAAGGATGGAGTTTATCCTGAAAAAGTGAACCCTGGTCG
CCAGGGAGTGGGAGTGAATTACAGATCAATTGGGAAGAATGTCAGTCCCA
TCGAGGTTAAGTTCACTGGGAAAGCAGTCTATGACTTGTGAGATGCAGAT
GATTGTTTA
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