CX296750

Overview
NameCX296750
Unique NameCX296750
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length582
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4958 contig Ccv1_Contig4958:410..991. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: GRP78_RAT (78 kDa glucose-regulated protein OS=Rattus norvegicus GN=Hspa5 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.430e-17
Identity = 60/182 (32.97%), Postives = 95/182 (52.20%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHAS-KSLPFLVQTVDIGVRPFIAALVNNAWRST-TPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGEDLLQNM 581
            +F+ KRLIGR   DP V    K LPF V  V+   +P+I   +      T  PEE+ A+ L +++  AE  L + + + V+T+P  F+  Q    + A  +AGL+V+R++ EPTA A+ Y                EK  ++F++G G  DV++     GV ++ A +G   +GGED  Q +
Sbjct:   92 VFDAKRLIGRTWNDPSVQQDIKFLPFKV--VEKKTKPYIQVDIGGGQTKTFAPEEISAMVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVMRIINEPTAAAIAYGLDKRE---------GEKNILVFDLGGGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQRV 262          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: GRP78_PONAB (78 kDa glucose-regulated protein OS=Pongo abelii GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.430e-17
Identity = 60/182 (32.97%), Postives = 95/182 (52.20%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHAS-KSLPFLVQTVDIGVRPFIAALVNNAWRST-TPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGEDLLQNM 581
            +F+ KRLIGR   DP V    K LPF V  V+   +P+I   +      T  PEE+ A+ L +++  AE  L + + + V+T+P  F+  Q    + A  +AGL+V+R++ EPTA A+ Y                EK  ++F++G G  DV++     GV ++ A +G   +GGED  Q +
Sbjct:   92 VFDAKRLIGRTWNDPSVQQDIKFLPFKV--VEKKTKPYIQVDIGGGQTKTFAPEEISAMVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVMRIINEPTAAAIAYGLDKRE---------GEKNILVFDLGGGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQRV 262          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: GRP78_MOUSE (78 kDa glucose-regulated protein OS=Mus musculus GN=Hspa5 PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 1.430e-17
Identity = 60/182 (32.97%), Postives = 95/182 (52.20%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHAS-KSLPFLVQTVDIGVRPFIAALVNNAWRST-TPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGEDLLQNM 581
            +F+ KRLIGR   DP V    K LPF V  V+   +P+I   +      T  PEE+ A+ L +++  AE  L + + + V+T+P  F+  Q    + A  +AGL+V+R++ EPTA A+ Y                EK  ++F++G G  DV++     GV ++ A +G   +GGED  Q +
Sbjct:   93 VFDAKRLIGRTWNDPSVQQDIKFLPFKV--VEKKTKPYIQVDIGGGQTKTFAPEEISAMVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVMRIINEPTAAAIAYGLDKRE---------GEKNILVFDLGGGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQRV 263          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: GRP78_MESAU (78 kDa glucose-regulated protein OS=Mesocricetus auratus GN=HSPA5 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.430e-17
Identity = 60/182 (32.97%), Postives = 95/182 (52.20%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHAS-KSLPFLVQTVDIGVRPFIAALVNNAWRST-TPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGEDLLQNM 581
            +F+ KRLIGR   DP V    K LPF V  V+   +P+I   +      T  PEE+ A+ L +++  AE  L + + + V+T+P  F+  Q    + A  +AGL+V+R++ EPTA A+ Y                EK  ++F++G G  DV++     GV ++ A +G   +GGED  Q +
Sbjct:   92 VFDAKRLIGRTWNDPSVQQDIKFLPFKV--VEKKTKPYIQVDIGGGQTKTFAPEEISAMVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVMRIINEPTAAAIAYGLDKRE---------GEKNILVFDLGGGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQRV 262          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: GRP78_HUMAN (78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.430e-17
Identity = 60/182 (32.97%), Postives = 95/182 (52.20%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHAS-KSLPFLVQTVDIGVRPFIAALVNNAWRST-TPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGEDLLQNM 581
            +F+ KRLIGR   DP V    K LPF V  V+   +P+I   +      T  PEE+ A+ L +++  AE  L + + + V+T+P  F+  Q    + A  +AGL+V+R++ EPTA A+ Y                EK  ++F++G G  DV++     GV ++ A +G   +GGED  Q +
Sbjct:   92 VFDAKRLIGRTWNDPSVQQDIKFLPFKV--VEKKTKPYIQVDIGGGQTKTFAPEEISAMVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVMRIINEPTAAAIAYGLDKRE---------GEKNILVFDLGGGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQRV 262          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: GRP78_DEBHA (78 kDa glucose-regulated protein homolog OS=Debaryomyces hansenii GN=KAR2 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.430e-17
Identity = 54/176 (30.68%), Postives = 98/176 (55.68%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHAS-KSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGED 566
            +F++KRLIG    D +V    K LP+ +   D   +P +    N+  ++ +PEE+  + L +++++AE  + + I + V+T+P  F+  Q    + A  +AGL+VLR++ EPTA A+ Y             +  EK  +++++G G  DV++ +  GGV ++ A +G   +GGED
Sbjct:  112 VFDIKRLIGLKYNDKMVQKEIKHLPYKIDKKD--GKPVVKVEFNDETKTFSPEEISGMILTKMKSIAEEYMGKKITHAVVTVPAYFNDAQRQATKDAGTIAGLNVLRIVNEPTAAAIAYGLDK---------TEGEKQIIVYDLGGGTFDVSLLSIEGGVFEVLATAGDTHLGGED 276          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: HSP72_SCHPO (Probable heat shock protein ssa2 OS=Schizosaccharomyces pombe GN=ssa2 PE=1 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 1.868e-17
Identity = 59/176 (33.52%), Postives = 95/176 (53.98%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHAS-KSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGED 566
            IF+ KRLIGR   DP V +  K  PF V + D   +P +        ++ TPEE+ ++ L+++R  AE  L   + + V+T+P  F+  Q    + A  +AGL+VLR++ EPTA A+ Y          +  +  E   +IF++G G  DV++     G+ ++KA +G   +GGED
Sbjct:   65 IFDAKRLIGRKFDDPEVQSDMKHWPFKVISKD--GKPVLQVEYKGETKTFTPEEISSMVLMKMRETAEAYLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGL--------DRSNQGESNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGED 230          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: HSP72_HUMAN (Heat shock-related 70 kDa protein 2 OS=Homo sapiens GN=HSPA2 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.868e-17
Identity = 58/181 (32.04%), Postives = 96/181 (53.04%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHAS-KSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGEDLLQNM 581
            IF+ KRLIGR   D  V +  K  PF V  V  G +P +        ++  PEE+ ++ L +++ +AE  L   + + V+T+P  F+  Q    + A  + GL+VLR++ EPTA A+ Y       + +   +G EK  +IF++G G  DV++     G+ ++K+ +G   +GGED    M
Sbjct:   68 IFDAKRLIGRKFEDATVQSDMKHWPFRV--VSEGGKPKVQVEYKGETKTFFPEEISSMVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAAIAY------GLDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRM 240          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: HSP72_CAPHI (Heat shock-related 70 kDa protein 2 OS=Capra hircus GN=HSPA2 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.868e-17
Identity = 58/181 (32.04%), Postives = 97/181 (53.59%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHAS-KSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGEDLLQNM 581
            IF+ KRLIGR   D  V +  K  PF V  V  G +P +        ++  PEE+ ++ L +++ +AE  L   +++ V+T+P  F+  Q    + A  + GL+VLR++ EPTA A+ Y       + +   +G EK  +IF++G G  DV++     G+ ++K+ +G   +GGED    M
Sbjct:   68 IFDAKRLIGRKFEDATVQSDMKHWPFRV--VSEGGKPKVQVEYKGEIKTFFPEEISSMVLTKMKEIAEAYLGGKVQSAVITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAAIAY------GLDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRM 240          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: HSP70_SCHMA (Heat shock 70 kDa protein homolog OS=Schistosoma mansoni PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.868e-17
Identity = 57/181 (31.49%), Postives = 96/181 (53.04%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHAS-KSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGEDLLQNM 581
            +F+ KRLIGR   DP V +  K  PF  +   +G +  I        +  + EE+ ++ L +++ +AE+ L R + + V+T+P  F+  Q    + A A+AGL+VLR++ EPTA A+ Y              G E+  +IF++G G  DV++     G+ ++K+ +G   +GGED    M
Sbjct:   65 VFDAKRLIGRRFDDPSVQSDMKHWPF--EVTQVGGKLKICVEYKGEKKMFSAEEISSMVLTKMKEVAESYLGRTVSDAVITVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAAIAYGLDKKV--------GGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRM 235          
The following BLAST results are available for this feature:
BLAST of CX296750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GRP78_RAT1.430e-1732.9778 kDa glucose-regulated protein OS=Rattus norvegi... [more]
GRP78_PONAB1.430e-1732.9778 kDa glucose-regulated protein OS=Pongo abelii G... [more]
GRP78_MOUSE1.430e-1732.9778 kDa glucose-regulated protein OS=Mus musculus G... [more]
GRP78_MESAU1.430e-1732.9778 kDa glucose-regulated protein OS=Mesocricetus a... [more]
GRP78_HUMAN1.430e-1732.9778 kDa glucose-regulated protein OS=Homo sapiens G... [more]
GRP78_DEBHA1.430e-1730.6878 kDa glucose-regulated protein homolog OS=Debary... [more]
HSP72_SCHPO1.868e-1733.52Probable heat shock protein ssa2 OS=Schizosaccharo... [more]
HSP72_HUMAN1.868e-1732.04Heat shock-related 70 kDa protein 2 OS=Homo sapien... [more]
HSP72_CAPHI1.868e-1732.04Heat shock-related 70 kDa protein 2 OS=Capra hircu... [more]
HSP70_SCHMA1.868e-1731.49Heat shock 70 kDa protein homolog OS=Schistosoma m... [more]

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Properties
Property NameValue
Genbank descriptionC05802D04SK FerrChloL1 Citrus clementina cDNA clone C05802D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296750 ID=CX296750; Name=CX296750; organism=Citrus clementina; type=EST; length=582bp
GAGGCTCACTCTCCCATGAACATGAAATGTTATCTGGAGCTGCTATTTTC
AACATGAAACGCTTAATCGGCAGAGTTGACACCGATCCTGTGGTCCATGC
AAGCAAAAGCTTACCGTTTTTGGTCCAAACCGTGGACATTGGTGTTCGTC
CATTTATTGCAGCCTTAGTGAACAATGCGTGGAGATCCACCACTCCCGAA
GAAGTCCTGGCAATATTTTTGGTGGAACTAAGAGCCATGGCTGAAACTCA
GTTGAAACGCCCAATAAGAAATGTTGTTCTAACCATTCCAGTTTCATTCA
GTCGTTTCCAACTGACACGCATTGAACGAGCATGTGCTATGGCTGGCCTT
CATGTCCTCAGACTTATGCCTGAACCAACTGCTGTAGCTCTATTGTATGC
TCAGCAGCAGCAACAGAGTGTGCATGAGAATTTGGGCAGTGGAAGTGAGA
AGATTGCGGTCATTTTCAATATGGGTGCTGGGTACTGTGATGTCACTGTG
AGTGCTACAGCTGGAGGAGTTTCACAGATTAAAGCTTTATCAGGAAGTGC
TATTGGAGGAGAGGATTTACTTCAGAATATGA
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