CX296750

Overview
NameCX296750
Unique NameCX296750
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length582
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4958 contig Ccv1_Contig4958:410..991. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: DNAK_SALAI (Chaperone protein dnaK OS=Salinispora arenicola (strain CNS-205) GN=dnaK PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.061e-12
Identity = 46/127 (36.22%), Postives = 74/127 (58.27%), Query Frame = 3
Query:  192 TPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGS-EKIAVIFNMGAGYCDVTVSATAGGVSQIKALSG-SAIGGED 566
            TP+E+ A  L++L+  AE+ L   I + V+T+P  F+  Q    + A  +AG +VLR++ EPTA AL Y           L  GS E+  ++F++G G  DV++   A GV ++K+ SG + +GG+D
Sbjct:   87 TPQEISARTLMKLKRDAESYLGEQITDAVITVPAYFNDGQRQATKEAGEIAGFNVLRIVNEPTAAALAY----------GLDKGSKEQTVLVFDLGGGTFDVSLLELAEGVIEVKSTSGDNLLGGDD 203          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: DNAK_METBF (Chaperone protein dnaK OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=dnaK PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.061e-12
Identity = 44/130 (33.85%), Postives = 75/130 (57.69%), Query Frame = 3
Query:  195 PEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSG-SAIGGEDLLQNM 581
            P+E+ A+ L +L+  AE  L   I+  V+T+P  F+  Q    + A A+AGL VLR++ EPT+ +L Y          + G   +KI +++++G G  DV++    GGV ++K+ SG + +GG+D  Q +
Sbjct:   89 PQEISAMILQKLKTDAEAYLGETIKQAVITVPAYFNDAQRQATKDAGAIAGLDVLRIINEPTSASLAYGL--------DKGDIEQKI-LVYDLGGGTFDVSILELGGGVFEVKSTSGDTRLGGDDFDQRI 209          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: DNAK_MEGEL (Chaperone protein dnaK (Fragment) OS=Megasphaera elsdenii GN=dnaK PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.061e-12
Identity = 43/126 (34.13%), Postives = 70/126 (55.56%), Query Frame = 3
Query:  192 TPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGED 566
            TP+E+ A+ L +L+  AE+ L   +   V+T+P  F+  Q    + A  +AGL VLR++ EPTA AL Y           L  G +   ++F++G G  DV++     GV ++KA +G+  +GG+D
Sbjct:   87 TPQEISAMILQKLKEDAESYLGEKVTQAVITVPAYFNDGQRQATKDAGKIAGLDVLRIVNEPTAAALAY----------GLDKGGDGKILVFDLGGGTFDVSILELGDGVFEVKATNGNTHLGGDD 202          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: DNAK_DESRM (Chaperone protein dnaK OS=Desulfotomaculum reducens (strain MI-1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.061e-12
Identity = 44/131 (33.59%), Postives = 71/131 (54.20%), Query Frame = 3
Query:  192 TPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSG-SAIGGEDLLQNM 581
            +P+E+ A+ L +L+A AE  L   +   V+T+P  FS  Q    + A  +AGL VLR++ EPTA AL Y           L    ++   +F++G G  DV++     GV ++K+ SG + +GG+D  Q +
Sbjct:   87 SPQEISAMILSKLKADAEAYLGESVTQAVITVPAYFSDAQRQATKDAGKIAGLEVLRIINEPTAAALAY----------GLDKEGDQTIQVFDLGGGTFDVSILELGDGVFEVKSTSGNNRLGGDDFDQRI 207          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: DNAK_DEHSC (Chaperone protein dnaK OS=Dehalococcoides sp. (strain CBDB1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.061e-12
Identity = 53/187 (28.34%), Postives = 91/187 (48.66%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHASKSLPFLVQTVDIGVRPFIAALVNN-------AWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGEDLLQNM 581
            ++++KR +GR   +P   A + LP      D   +P+     NN         +  +P EV A+ L +L++ AE  L   +   V+T+P  F+  Q    + A A+AGL VLR++ EPTA AL Y           L    ++   ++++G G  D+++     G  Q+K+ +G   +GG+D  Q +
Sbjct:   66 VYSIKRFMGRKWGEP---AGRELPV---EADAKRKPYKVIQGNNNEVRVVMGDKDFSPPEVSAMILQKLKSDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGAIAGLKVLRIINEPTAAALAY----------GLDKKKDETIAVYDLGGGTFDISILELGEGTFQVKSTAGDTHLGGDDFDQKI 236          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: DNAK_DEHSB (Chaperone protein dnaK OS=Dehalococcoides sp. (strain BAV1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.061e-12
Identity = 53/187 (28.34%), Postives = 91/187 (48.66%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHASKSLPFLVQTVDIGVRPFIAALVNN-------AWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGEDLLQNM 581
            ++++KR +GR   +P   A + LP      D   +P+     NN         +  +P EV A+ L +L++ AE  L   +   V+T+P  F+  Q    + A A+AGL VLR++ EPTA AL Y           L    ++   ++++G G  D+++     G  Q+K+ +G   +GG+D  Q +
Sbjct:   66 VYSIKRFMGRKWGEP---AGRELPV---EADAKRKPYKVIQGNNNEVRVVMGDKDFSPPEVSAMILQKLKSDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGAIAGLKVLRIINEPTAAALAY----------GLDKKKDETIAVYDLGGGTFDISILELGEGTFQVKSTAGDTHLGGDDFDQKI 236          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: DNAK_DEHE1 (Chaperone protein dnaK OS=Dehalococcoides ethenogenes (strain 195) GN=dnaK PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.061e-12
Identity = 53/187 (28.34%), Postives = 91/187 (48.66%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHASKSLPFLVQTVDIGVRPFIAALVNN-------AWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGEDLLQNM 581
            ++++KR +GR   +P   A + LP      D   +P+     NN         +  +P EV A+ L +L++ AE  L   +   V+T+P  F+  Q    + A A+AGL VLR++ EPTA AL Y           L    ++   ++++G G  D+++     G  Q+K+ +G   +GG+D  Q +
Sbjct:   66 VYSIKRFMGRKWGEP---AGRELPV---EADAKRKPYKVIQGNNNEVRVVMGDKDFSPPEVSAMILQKLKSDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGAIAGLKVLRIINEPTAAALAY----------GLDKKKDETIAVYDLGGGTFDISILELGEGTFQVKSTAGDTHLGGDDFDQKI 236          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: DNAK_CHLPD (Chaperone protein dnaK OS=Chlorobium phaeobacteroides (strain DSM 266) GN=dnaK PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.061e-12
Identity = 55/180 (30.56%), Postives = 91/180 (50.56%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHASKSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGEDLLQNM 581
            I+++KR +GR   D V +  K  P+ +      V     A V    ++ +P+E+ A+ L +++  AE  L   +   V+T+P  F+  Q    + A  +AGL V R++ EPTA AL Y      S        SEK+AV F++G G  D+++     GV ++K+  G   +GG+D  Q +
Sbjct:   66 IYSIKRFVGR-KFDEVPNEKKLAPYDI------VNEGGEARVKINDKAYSPQEISAMILQKMKQTAEDFLGEKVSEAVITVPAYFNDAQRQATKDAGRIAGLDVKRIINEPTAAALAYGLDKKQS--------SEKVAV-FDLGGGTFDISILELGDGVFEVKSTDGDTHLGGDDFDQKI 229          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: DNAK_BREBN (Chaperone protein dnaK OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=dnaK PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.061e-12
Identity = 42/126 (33.33%), Postives = 71/126 (56.35%), Query Frame = 3
Query:  192 TPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSG-SAIGGED 566
            TPE++ A+ L +L+A AE  L + +   V+T+P  F+  Q    + A  +AGL VLR++ EPTA AL Y           +    ++  ++F++G G  DV++   + G  ++KA SG + +GG+D
Sbjct:   86 TPEQISAMILQKLKADAEAYLGQSVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIVNEPTAAALAY----------GMEKTEDQTVLVFDLGGGTFDVSILELSDGFFEVKATSGDNKLGGDD 201          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: DNAK_ACICJ (Chaperone protein dnaK OS=Acidiphilium cryptum (strain JF-5) GN=dnaK PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.061e-12
Identity = 51/181 (28.18%), Postives = 86/181 (47.51%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHASKSL-PFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGEDLLQNM 581
            ++ +KRLIGR   DP V   K L  + +   D G      A V +  +   P ++ +  L +++  AE  L   +   V+T+P  F+  Q    + A  +AGL VLR++ EPTA AL Y           +         ++++G G  D+++     GV ++K+ +G   +GGED  Q +
Sbjct:   66 LYAVKRLIGRRYDDPTVEKDKGLVSYNIVRGDNG-----DAWVESRGQRYAPSQISSFVLTKMKETAEAYLGEAVTQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAY----------GMDKKQGGTIAVYDLGGGTFDISILELGDGVFEVKSTNGDTFLGGEDFDQRV 231          
The following BLAST results are available for this feature:
BLAST of CX296750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_SALAI1.061e-1236.22Chaperone protein dnaK OS=Salinispora arenicola (s... [more]
DNAK_METBF1.061e-1233.85Chaperone protein dnaK OS=Methanosarcina barkeri (... [more]
DNAK_MEGEL1.061e-1234.13Chaperone protein dnaK (Fragment) OS=Megasphaera e... [more]
DNAK_DESRM1.061e-1233.59Chaperone protein dnaK OS=Desulfotomaculum reducen... [more]
DNAK_DEHSC1.061e-1228.34Chaperone protein dnaK OS=Dehalococcoides sp. (str... [more]
DNAK_DEHSB1.061e-1228.34Chaperone protein dnaK OS=Dehalococcoides sp. (str... [more]
DNAK_DEHE11.061e-1228.34Chaperone protein dnaK OS=Dehalococcoides ethenoge... [more]
DNAK_CHLPD1.061e-1230.56Chaperone protein dnaK OS=Chlorobium phaeobacteroi... [more]
DNAK_BREBN1.061e-1233.33Chaperone protein dnaK OS=Brevibacillus brevis (st... [more]
DNAK_ACICJ1.061e-1228.18Chaperone protein dnaK OS=Acidiphilium cryptum (st... [more]

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Properties
Property NameValue
Genbank descriptionC05802D04SK FerrChloL1 Citrus clementina cDNA clone C05802D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296750 ID=CX296750; Name=CX296750; organism=Citrus clementina; type=EST; length=582bp
GAGGCTCACTCTCCCATGAACATGAAATGTTATCTGGAGCTGCTATTTTC
AACATGAAACGCTTAATCGGCAGAGTTGACACCGATCCTGTGGTCCATGC
AAGCAAAAGCTTACCGTTTTTGGTCCAAACCGTGGACATTGGTGTTCGTC
CATTTATTGCAGCCTTAGTGAACAATGCGTGGAGATCCACCACTCCCGAA
GAAGTCCTGGCAATATTTTTGGTGGAACTAAGAGCCATGGCTGAAACTCA
GTTGAAACGCCCAATAAGAAATGTTGTTCTAACCATTCCAGTTTCATTCA
GTCGTTTCCAACTGACACGCATTGAACGAGCATGTGCTATGGCTGGCCTT
CATGTCCTCAGACTTATGCCTGAACCAACTGCTGTAGCTCTATTGTATGC
TCAGCAGCAGCAACAGAGTGTGCATGAGAATTTGGGCAGTGGAAGTGAGA
AGATTGCGGTCATTTTCAATATGGGTGCTGGGTACTGTGATGTCACTGTG
AGTGCTACAGCTGGAGGAGTTTCACAGATTAAAGCTTTATCAGGAAGTGC
TATTGGAGGAGAGGATTTACTTCAGAATATGA
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