CX296750

Overview
NameCX296750
Unique NameCX296750
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length582
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4958 contig Ccv1_Contig4958:410..991. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: BIP2_DICDI (Luminal-binding protein 2 OS=Dictyostelium discoideum GN=bip2 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.916e-18
Identity = 58/181 (32.04%), Postives = 98/181 (54.14%), Query Frame = 3
Query:   45 IFNMKRLIGR-VDTDPVVHASKSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGEDLLQNM 581
            IF++KRLIGR  D + V    K LP+ +  V    +P++   V    ++ +PEE+ A+ L  ++ +AE  L + + + V+T P  F+  Q    + A  +AGL VLR++ EPTA AL Y          +     EK  +++++G G  DV+V +   GV ++++ +G   +GGED  Q +
Sbjct:   95 IFDIKRLIGRRFDDEEVQRDMKLLPYKI--VSKNNKPYVVVKVKGEEKTYSPEEISAMILGRMKEIAEASLGKTVTHAVVTCPAYFNDAQRAATKDAGVIAGLEVLRVINEPTAAALAYGF--------DATGDKEKNILVYDLGGGTFDVSVLSIEDGVFEVRSTNGDTHLGGEDFDQRV 265          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: HSP73_ARATH (Heat shock cognate 70 kDa protein 3 OS=Arabidopsis thaliana GN=HSC70-3 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.420e-18
Identity = 59/181 (32.60%), Postives = 98/181 (54.14%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHASKSL-PFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGEDLLQNM 581
            +F+ KRLIGR  TD  V +   L PF +++     +P I        +  + EE+ ++ L+++R +AE  L   I+N V+T+P  F+  Q    + A  +AGL+V+R++ EPTA A+ Y       + +   S  EK  +IF++G G  DV++     G+ ++KA +G   +GGED    M
Sbjct:   70 VFDAKRLIGRRFTDSSVQSDIKLWPFTLKSGP-AEKPMIVVNYKGEDKEFSAEEISSMILIKMREIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAY------GLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRM 243          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: HSP72_PICAN (Heat shock protein 70 2 OS=Pichia angusta GN=HSA2 PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 6.420e-18
Identity = 59/176 (33.52%), Postives = 96/176 (54.55%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHAS-KSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGED 566
            +F+ KRLIGR   DP V    K  PF V  VD   +P I        +  TPEE+ ++ L +++  AE+ L   +++ V+T+P  F+  Q    + A  +AGL+V+R++ EPTA A+ Y          +  S  E+  +IF++G G  DV++ +   G+ ++KA +G   +GGED
Sbjct:   65 VFDAKRLIGRKFDDPEVQGDIKHFPFKV--VDKSGKPQIQVEFKGETKVFTPEEISSMVLTKMKETAESFLGTTVKDAVITVPAYFNDSQRQATKDAGLIAGLNVMRIINEPTAAAIAYGL--------DKKSQGEQNVLIFDLGGGTFDVSLLSIEDGIFEVKATAGDTHLGGED 230          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: GRP78_ASHGO (78 kDa glucose-regulated protein homolog OS=Ashbya gossypii GN=KAR2 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.420e-18
Identity = 58/176 (32.95%), Postives = 94/176 (53.41%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHAS-KSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGED 566
            IF++KRLIG    D  V    K LPF  + VD    P +A  V    +  TPEE+  + L +++ +AE  L + + + V+T+P  F+  Q    + A A+AGL++LR++ EPTA A+ Y        H           V++++G G  DV++ +   GV +++A +G   +GGED
Sbjct:  110 IFDIKRLIGLKYNDKTVQREIKHLPF--EVVDKNGMPAVAVTVKGERKLFTPEEISGMVLGKMKQIAEEYLGKKVTHAVVTVPAYFNDAQRQATKDAGAIAGLNILRIVNEPTAAAIAYGLDKTEDEHR---------IVVYDLGGGTFDVSLLSIENGVFEVQATAGDTHLGGED 274          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: HSP72_ARATH (Heat shock cognate 70 kDa protein 2 OS=Arabidopsis thaliana GN=HSC70-2 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 8.385e-18
Identity = 58/181 (32.04%), Postives = 97/181 (53.59%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHASKSL-PFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGEDLLQNM 581
            +F+ KRLIGR  +D  V + + L PF + +     +P I        +    EE+ ++ L+++R +AE  L   ++N V+T+P  F+  Q    + A  +AGL+VLR++ EPTA A+ Y       + +   S  EK  +IF++G G  DV++     G+ ++KA +G   +GGED    M
Sbjct:   70 VFDAKRLIGRRFSDASVQSDRQLWPFTIIS-GTAEKPMIVVEYKGEEKQFAAEEISSMVLIKMREIAEAFLGTTVKNAVVTVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAY------GLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRM 243          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: HSP70_PLAFA (Heat shock 70 kDa protein OS=Plasmodium falciparum PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 8.385e-18
Identity = 60/176 (34.09%), Postives = 99/176 (56.25%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHAS-KSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGED 566
            +F+ KRLIGR  T+  V +  K  PF V++  +  +P I        +   PEE+ ++ L +++  AE  L + I+N V+T+P  F+  Q    + A  +AGL+V+R++ EPTA A+ Y       +H+  G G EK  +IF++G G  DV++     G+ ++KA +G   +GGED
Sbjct:   78 VFDAKRLIGRKFTESSVQSDMKHWPFTVKS-GVDEKPMIEVTYQGEKKLFHPEEISSMVLQKMKENAEAFLGKSIKNAVITVPAYFNDSQRQATKDAGTIAGLNVMRIINEPTAAAIAY------GLHKK-GKG-EKNILIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGED 244          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: HSP70_EMENI (Heat shock 70 kDa protein OS=Emericella nidulans GN=hsp70 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.385e-18
Identity = 61/176 (34.66%), Postives = 91/176 (51.70%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHAS-KSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGED 566
            +F+ KRLIGR   D  V A  K  PF V  VD   +P I        +  TPEE+ ++ L ++R  AE  L   + N V+T+P  F+  Q    + A  +AGL+VLR++ EPTA A+ Y                E+  +IF++G G  DV++     G+ ++KA +G   +GGED
Sbjct:   65 VFDAKRLIGRRFGDAEVQADMKHWPFKV--VDKSGKPIIEVEFKGETKQFTPEEISSMVLTKMRETAEAFLGGTVNNAVITVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGLDKKVE--------GERNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGED 230          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: HSP72_RAT (Heat shock-related 70 kDa protein 2 OS=Rattus norvegicus GN=Hspa2 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.095e-17
Identity = 58/181 (32.04%), Postives = 97/181 (53.59%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHAS-KSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGEDLLQNM 581
            IF+ KRLIGR   D  V +  K  PF V  V  G +P +        ++  PEE+ ++ L +++ +AE  L   +++ V+T+P  F+  Q    + A  + GL+VLR++ EPTA A+ Y       + +   +G EK  +IF++G G  DV++     G+ ++K+ +G   +GGED    M
Sbjct:   68 IFDAKRLIGRKFEDATVQSDMKHWPFRV--VSEGGKPKVQVEYKGEMKTFFPEEISSMVLTKMKEIAEAYLGGKVQSAVITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAAIAY------GLDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRM 240          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: HSP71_CERAE (Heat shock 70 kDa protein 1 OS=Cercopithecus aethiops GN=HSPA1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.095e-17
Identity = 58/175 (33.14%), Postives = 95/175 (54.29%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHAS-KSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSAIGGED 566
            +F+ KRLIGR   DPVV +  K  PF  Q ++ G +P +        ++  PEE+ ++ L +++ +AE  L  P+ N V+T+P  F+  Q    + A  +AGL+VLR++ EPT   + YA        +  G G E+  +IF++G G  DV++     G+ ++KA +G     ED
Sbjct:   67 VFDAKRLIGRKFGDPVVQSDMKHWPF--QVINDGDKPKVQVSYKGETKAFYPEEISSMVLTKMKEIAEADLGYPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTR-TIAYAL-------DRTGKG-ERNVLIFDLGGGTFDVSILTIDDGIFEVKATAGDTTWVED 230          
BLAST of CX296750 vs. ExPASy Swiss-Prot
Match: HSP70_PLACB (Heat shock 70 kDa protein OS=Plasmodium cynomolgi (strain Berok) PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.095e-17
Identity = 60/176 (34.09%), Postives = 99/176 (56.25%), Query Frame = 3
Query:   45 IFNMKRLIGRVDTDPVVHAS-KSLPFLVQTVDIGVRPFIAALVNNAWRSTTPEEVLAIFLVELRAMAETQLKRPIRNVVLTIPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAXXXXXSVHENLGSGSEKIAVIFNMGAGYCDVTVSATAGGVSQIKALSGSA-IGGED 566
            +F+ KRLIGR  T+  V +  K  PF V++  +  +P I        +   PEE+ ++ L +++  AE  L + I+N V+T+P  F+  Q    + A  +AGL+V+R++ EPTA A+ Y       +H+  G G EK  +IF++G G  DV++     G+ ++KA +G   +GGED
Sbjct:   78 VFDAKRLIGRKFTESSVQSDMKHWPFTVKS-GVDEKPMIEVSYQGEKKLFHPEEISSMVLQKMKENAEAFLGKSIKNAVITVPAYFNDSQRQATKDAGTIAGLNVMRIINEPTAAAIAY------GLHKK-GKG-EKNILIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGED 244          
The following BLAST results are available for this feature:
BLAST of CX296750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
BIP2_DICDI4.916e-1832.04Luminal-binding protein 2 OS=Dictyostelium discoid... [more]
HSP73_ARATH6.420e-1832.60Heat shock cognate 70 kDa protein 3 OS=Arabidopsis... [more]
HSP72_PICAN6.420e-1833.52Heat shock protein 70 2 OS=Pichia angusta GN=HSA2 ... [more]
GRP78_ASHGO6.420e-1832.9578 kDa glucose-regulated protein homolog OS=Ashbya... [more]
HSP72_ARATH8.385e-1832.04Heat shock cognate 70 kDa protein 2 OS=Arabidopsis... [more]
HSP70_PLAFA8.385e-1834.09Heat shock 70 kDa protein OS=Plasmodium falciparum... [more]
HSP70_EMENI8.385e-1834.66Heat shock 70 kDa protein OS=Emericella nidulans G... [more]
HSP72_RAT1.095e-1732.04Heat shock-related 70 kDa protein 2 OS=Rattus norv... [more]
HSP71_CERAE1.095e-1733.14Heat shock 70 kDa protein 1 OS=Cercopithecus aethi... [more]
HSP70_PLACB1.095e-1734.09Heat shock 70 kDa protein OS=Plasmodium cynomolgi ... [more]

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Properties
Property NameValue
Genbank descriptionC05802D04SK FerrChloL1 Citrus clementina cDNA clone C05802D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296750 ID=CX296750; Name=CX296750; organism=Citrus clementina; type=EST; length=582bp
GAGGCTCACTCTCCCATGAACATGAAATGTTATCTGGAGCTGCTATTTTC
AACATGAAACGCTTAATCGGCAGAGTTGACACCGATCCTGTGGTCCATGC
AAGCAAAAGCTTACCGTTTTTGGTCCAAACCGTGGACATTGGTGTTCGTC
CATTTATTGCAGCCTTAGTGAACAATGCGTGGAGATCCACCACTCCCGAA
GAAGTCCTGGCAATATTTTTGGTGGAACTAAGAGCCATGGCTGAAACTCA
GTTGAAACGCCCAATAAGAAATGTTGTTCTAACCATTCCAGTTTCATTCA
GTCGTTTCCAACTGACACGCATTGAACGAGCATGTGCTATGGCTGGCCTT
CATGTCCTCAGACTTATGCCTGAACCAACTGCTGTAGCTCTATTGTATGC
TCAGCAGCAGCAACAGAGTGTGCATGAGAATTTGGGCAGTGGAAGTGAGA
AGATTGCGGTCATTTTCAATATGGGTGCTGGGTACTGTGATGTCACTGTG
AGTGCTACAGCTGGAGGAGTTTCACAGATTAAAGCTTTATCAGGAAGTGC
TATTGGAGGAGAGGATTTACTTCAGAATATGA
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