CX296757

Overview
NameCX296757
Unique NameCX296757
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig108 contig Ccv1_Contig108:648..1337. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296757 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 2.735e-97
Identity = 148/162 (91.36%), Postives = 157/162 (96.91%), Query Frame = 3 
Query:   84 WAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 569
            WAMLGALGCVFPELLARNGVKFGEA WFKAG+QIFS+GGLDYLGNPSL+HAQS+LAIWACQVVLMGAVEGYRIAGGPLGE+ DPLYPGGSFDPLGLA+ P+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE+LADH+ADPVNNNAW  ATNFVPGK
Sbjct:  105 WAMLGALGCVFPELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNNAWLIATNFVPGK 266

HSP 2 Score: 61.6178 bits (148), Expect = 2.735e-97
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 2 
Query:    5 GWDTAGLSADPETFAKNRELEVIHCRMGHVGS 100
            GWDTAGLSADPETFAKNRELEVIHCR   +G+
Sbjct:   79 GWDTAGLSADPETFAKNRELEVIHCRWAMLGA 110
[Close]
BLAST of CX296757 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 2.737e-97
Identity = 151/162 (93.21%), Postives = 158/162 (97.53%), Query Frame = 3 
Query:   84 WAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 569
            WAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA QV+LMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+ PEAFAELKVKE+KNGRLAMFSMFGFFV AIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:   67 WAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 228

HSP 2 Score: 57.7658 bits (138), Expect = 2.737e-97
Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 2 
Query:    5 GWDTAGLSADPETFAKNRELEVIHCRMGHVGS 100
            GWDTAGLSADPETFAKNRELEVIH R   +G+
Sbjct:   41 GWDTAGLSADPETFAKNRELEVIHSRWAMLGA 72
[Close]
BLAST of CX296757 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 3.568e-97
Identity = 149/162 (91.98%), Postives = 158/162 (97.53%), Query Frame = 3 
Query:   84 WAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 569
            WAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSIL+IWA QV+LMGAVEGYR+AGGPLGE+ DPLYPGGSFDPLGLA+DPE  AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  103 WAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264

HSP 2 Score: 57.7658 bits (138), Expect = 3.568e-97
Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 2 
Query:    5 GWDTAGLSADPETFAKNRELEVIHCRMGHVGS 100
            GWDTAGLSADPETFAKNRELEVIH R   +G+
Sbjct:   77 GWDTAGLSADPETFAKNRELEVIHSRWAMLGA 108
[Close]
BLAST of CX296757 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 1.033e-96
Identity = 147/162 (90.74%), Postives = 157/162 (96.91%), Query Frame = 3 
Query:   84 WAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 569
            WAMLGALGCV PELLA+NGVKFGEAVWFKAG+QIF+EGGLDYLGNPSL+HAQSILAIWACQV+LMGAVEGYR+AGGPLGEV DP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL+DHLADP  NNAWAYATNF PGK
Sbjct:  104 WAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNNAWAYATNFTPGK 265

HSP 2 Score: 57.7658 bits (138), Expect = 1.033e-96
Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 2 
Query:    5 GWDTAGLSADPETFAKNRELEVIHCRMGHVGS 100
            GWDTAGLSADPETFAKNRELEVIH R   +G+
Sbjct:   78 GWDTAGLSADPETFAKNRELEVIHSRWAMLGA 109
[Close]
BLAST of CX296757 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 1.033e-96
Identity = 152/163 (93.25%), Postives = 157/163 (96.32%), Query Frame = 3 
Query:   84 WAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 569
            WAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE  D LYPGGSFDPLGLA DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  104 WAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266

HSP 2 Score: 60.4622 bits (145), Expect = 1.033e-96
Identity = 26/32 (81.25%), Postives = 29/32 (90.62%), Query Frame = 2 
Query:    5 GWDTAGLSADPETFAKNRELEVIHCRMGHVGS 100
            GWDTAGLSADPETFA+NRELEVIHCR   +G+
Sbjct:   78 GWDTAGLSADPETFARNRELEVIHCRWAMLGA 109
[Close]
BLAST of CX296757 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 311.997 bits (798), Expect = 1.033e-96
Identity = 146/162 (90.12%), Postives = 156/162 (96.30%), Query Frame = 3 
Query:   84 WAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 569
            WAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG VEGYR+ GGPLGE  DP+YPGG+FDPLGLADDP+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:  104 WAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWAYATNFVPGK 265

HSP 2 Score: 61.6178 bits (148), Expect = 1.033e-96
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 2 
Query:    5 GWDTAGLSADPETFAKNRELEVIHCRMGHVGS 100
            GWDTAGLSADPETFAKNRELEVIHCR   +G+
Sbjct:   78 GWDTAGLSADPETFAKNRELEVIHCRWAMLGA 109
[Close]
BLAST of CX296757 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 4.275e-95
Identity = 143/162 (88.27%), Postives = 155/162 (95.68%), Query Frame = 3 
Query:   84 WAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 569
            WAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+ GGPLGE  D +YPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL+DH+ DPV NNAWAYATNFVPGK
Sbjct:  104 WAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANNAWAYATNFVPGK 265

HSP 2 Score: 60.4622 bits (145), Expect = 4.275e-95
Identity = 26/32 (81.25%), Postives = 29/32 (90.62%), Query Frame = 2 
Query:    5 GWDTAGLSADPETFAKNRELEVIHCRMGHVGS 100
            GWDTAGLSADPETFA+NRELEVIHCR   +G+
Sbjct:   78 GWDTAGLSADPETFARNRELEVIHCRWAMLGA 109
[Close]
BLAST of CX296757 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 7.276e-95
Identity = 144/162 (88.89%), Postives = 156/162 (96.30%), Query Frame = 3 
Query:   84 WAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 569
            WAMLGALGC+FPELL++NGV+FGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA QVVLMG +EGYR+ GGPLGE  DPLYPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADH+ADPV NNAWA+ATNFVPGK
Sbjct:  103 WAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVANNAWAFATNFVPGK 264

HSP 2 Score: 57.7658 bits (138), Expect = 7.276e-95
Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 2 
Query:    5 GWDTAGLSADPETFAKNRELEVIHCRMGHVGS 100
            GWDTAGLSADPETFAKNRELEVIH R   +G+
Sbjct:   77 GWDTAGLSADPETFAKNRELEVIHSRWAMLGA 108
[Close]
BLAST of CX296757 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 9.492e-95
Identity = 149/163 (91.41%), Postives = 157/163 (96.32%), Query Frame = 3 
Query:   84 WAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 569
            WAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFS+GGLDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE  D LYPGGSFDPLGLA DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  105 WAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267

HSP 2 Score: 56.6102 bits (135), Expect = 9.492e-95
Identity = 25/32 (78.12%), Postives = 28/32 (87.50%), Query Frame = 2 
Query:    5 GWDTAGLSADPETFAKNRELEVIHCRMGHVGS 100
            GWDTAGLSADPETFA+NRELEVIH R   +G+
Sbjct:   79 GWDTAGLSADPETFARNRELEVIHSRWAMLGA 110
[Close]
BLAST of CX296757 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 9.492e-95
Identity = 149/163 (91.41%), Postives = 157/163 (96.32%), Query Frame = 3 
Query:   84 WAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 569
            WAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFS+GGLDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE  D LYPGGSFDPLGLA DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  105 WAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267

HSP 2 Score: 56.6102 bits (135), Expect = 9.492e-95
Identity = 25/32 (78.12%), Postives = 28/32 (87.50%), Query Frame = 2 
Query:    5 GWDTAGLSADPETFAKNRELEVIHCRMGHVGS 100
            GWDTAGLSADPETFA+NRELEVIH R   +G+
Sbjct:   79 GWDTAGLSADPETFARNRELEVIHSRWAMLGA 110
The following BLAST results are available for this feature:
BLAST of CX296757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CB21_WHEAT2.735e-9791.36Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PEA2.737e-9793.21Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB23_APIGR3.568e-9791.98Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_POLMU1.033e-9690.74Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB21_SINAL1.033e-9693.25Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_GOSHI1.033e-9690.12Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB24_SOLLC4.275e-9588.27Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB21_LEMGI7.276e-9588.89Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_ARATH9.492e-9591.41Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH9.492e-9591.41Chlorophyll a-b binding protein 165/180, chloropla... [more]

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Properties
Property NameValue
Genbank descriptionC05802D12SK FerrChloL1 Citrus clementina cDNA clone C05802D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296757 ID=CX296757; Name=CX296757; organism=Citrus clementina; type=EST; length=691bp
ACGAGGTTGGGACACTGCTGGGCTTTCAGCTGACCCAGAAACCTTTGCCA
AGAACCGTGAACTCGAAGTCATCCACTGCAGGATGGGCCATGTTGGGAGC
TCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCG
GTGAGGCCGTGTGGTTCAAGGCGGGGGCCCAGATCTTCAGCGAGGGCGGG
CTTGACTACTTGGGGAACCCAAGCCTGATCCACGCTCAGAGCATCTTGGC
CATCTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAA
TTGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGC
AGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCT
CAAGGTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTG
GTTTCTTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTG
GCCGACCACTTGGCTGACCCTGTCAATAACAATGCCTGGGCCTACGCCAC
CAACTTTGTCCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTT
TCGGTTTCTTGGATATCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTA
ATTTGAGTTGTGATTATTTATAAAATGCTTTCATTTGATCT
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