CX296759

Overview
NameCX296759
Unique NameCX296759
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length638
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14306 contig Ccv1_Contig14306:24..661. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296759 vs. ExPASy Swiss-Prot
Match: H4_DROOR (Histone H4 OS=Drosophila orena GN=His4 PE=3 SV=3)

HSP 1 Score: 147.517 bits (371), Expect = 5.374e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 367
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of CX296759 vs. ExPASy Swiss-Prot
Match: H4_DROME (Histone H4 OS=Drosophila melanogaster GN=His4 PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 5.374e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 367
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of CX296759 vs. ExPASy Swiss-Prot
Match: H4_DROMA (Histone H4 OS=Drosophila mauritiana GN=His4 PE=3 SV=3)

HSP 1 Score: 147.517 bits (371), Expect = 5.374e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 367
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of CX296759 vs. ExPASy Swiss-Prot
Match: H4_DROHY (Histone H4 OS=Drosophila hydei GN=His4 PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 5.374e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 367
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of CX296759 vs. ExPASy Swiss-Prot
Match: H4_DROER (Histone H4 OS=Drosophila erecta GN=His4 PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 5.374e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 367
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of CX296759 vs. ExPASy Swiss-Prot
Match: H4_CHITH (Histone H4 OS=Chironomus thummi thummi GN=His4 PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 5.374e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 367
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of CX296759 vs. ExPASy Swiss-Prot
Match: H4_CHICK (Histone H4 OS=Gallus gallus GN=H4-I PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 5.374e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 367
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of CX296759 vs. ExPASy Swiss-Prot
Match: H4_CHAVR (Histone H4 OS=Chaetopterus variopedatus PE=3 SV=3)

HSP 1 Score: 147.517 bits (371), Expect = 5.374e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 367
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of CX296759 vs. ExPASy Swiss-Prot
Match: H4_CAIMO (Histone H4 OS=Cairina moschata PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 5.374e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 367
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of CX296759 vs. ExPASy Swiss-Prot
Match: H4_BOVIN (Histone H4 OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 5.374e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 367
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 97
The following BLAST results are available for this feature:
BLAST of CX296759 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_DROOR5.374e-3597.37Histone H4 OS=Drosophila orena GN=His4 PE=3 SV=3[more]
H4_DROME5.374e-3597.37Histone H4 OS=Drosophila melanogaster GN=His4 PE=1... [more]
H4_DROMA5.374e-3597.37Histone H4 OS=Drosophila mauritiana GN=His4 PE=3 S... [more]
H4_DROHY5.374e-3597.37Histone H4 OS=Drosophila hydei GN=His4 PE=3 SV=2[more]
H4_DROER5.374e-3597.37Histone H4 OS=Drosophila erecta GN=His4 PE=3 SV=2[more]
H4_CHITH5.374e-3597.37Histone H4 OS=Chironomus thummi thummi GN=His4 PE=... [more]
H4_CHICK5.374e-3597.37Histone H4 OS=Gallus gallus GN=H4-I PE=1 SV=2[more]
H4_CHAVR5.374e-3597.37Histone H4 OS=Chaetopterus variopedatus PE=3 SV=3[more]
H4_CAIMO5.374e-3597.37Histone H4 OS=Cairina moschata PE=3 SV=2[more]
H4_BOVIN5.374e-3597.37Histone H4 OS=Bos taurus PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC05802E04SK FerrChloL1 Citrus clementina cDNA clone C05802E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296759 ID=CX296759; Name=CX296759; organism=Citrus clementina; type=EST; length=638bp
CGAGGAGTGCCGGAAAAAGAAAGAAAATTCCCAATTAGTTTGAAAACCGT
AATTAGCATTTTAATTTCGTAGCAGAATGTCTGGACGCGGCAAGGGAGGC
AAGGGATTGGGGAAGGGAGGAGCCAAGAGGCATCGCAAGGTGTTGCGTGA
TAACATTCAGGGCATCACCAAGCCGGCTATTCGCCGTTTGGCCAGAAGAG
GAGGCGTTAAGAGAATCAGCGGTCTCATCTACGAGGAGACACGCGGCGTC
CTCAAGATCTTCTTGGAGAACGTCATTCGCGATGCTGTGACCTACACTGA
GCACGCTCGCCGAAAGACGGTGACCGCCATGGATGTCGTTTATGCGCTCA
AGAGGCAGGGCAGGACTCTCTATGGCTTTGGTGGTTGATGTGGCGTCGTT
TTGTATTTTGTGTTTTAGGGTTTTCCTTTTTTCCTGTAAACCAGTGAACG
TGGTTGTGTCTAGCGAGTGGGTTTAAATTGGAGGCAACTTGTATTTGCCG
TTTCCTAGGGGTTTTTTTATTTTTTTGGTTCATTGGTGTTTTCATCTTTT
GCAATGAGAATCTAGATGTTTGCTAAAACCTCGTGCCGAATTCGGCACGA
GGCCTCGTGCCGAATTCGGCACGAAGGGGGGGCCCGGT
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