CX296759

Overview
NameCX296759
Unique NameCX296759
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length638
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX296759 vs. ExPASy Swiss-Prot
Match: H4_ASEAQ (Histone H4 OS=Asellus aquaticus GN=His4 PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 5.374e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 367
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of CX296759 vs. ExPASy Swiss-Prot
Match: H4_ACRAS (Histone H4 OS=Acrolepiopsis assectella GN=His4 PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 5.374e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 367
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of CX296759 vs. ExPASy Swiss-Prot
Match: H4_DENKL (Histone H4 OS=Dendronephthya klunzingeri GN=H4DEKL PE=3 SV=3)

HSP 1 Score: 147.132 bits (370), Expect = 7.019e-35
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 367
            +LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of CX296759 vs. ExPASy Swiss-Prot
Match: H4_ACRFO (Histone H4 OS=Acropora formosa PE=3 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 7.019e-35
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 367
            +LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of CX296759 vs. ExPASy Swiss-Prot
Match: H43_MAIZE (Histone H4.3 OS=Zea mays GN=H4 PE=1 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 9.167e-35
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 367
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGV KIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVRKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of CX296759 vs. ExPASy Swiss-Prot
Match: H4_STYPL (Histone H4 OS=Styela plicata PE=3 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 1.197e-34
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 367
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTA+DVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTALDVVYALKRQGRT 97
[Close]
BLAST of CX296759 vs. ExPASy Swiss-Prot
Match: H4_PYRSA (Histone H4 OS=Pyrenomonas salina PE=3 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 1.197e-34
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 367
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETR VLK+FLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of CX296759 vs. ExPASy Swiss-Prot
Match: H4_OIKDI (Histone H4 OS=Oikopleura dioica GN=H4.1 PE=3 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 1.197e-34
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 367
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTA+DVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTALDVVYALKRQGRT 97
[Close]
BLAST of CX296759 vs. ExPASy Swiss-Prot
Match: H4_STRPU (Histone H4 OS=Strongylocentrotus purpuratus PE=3 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.667e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 367
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of CX296759 vs. ExPASy Swiss-Prot
Match: H4_PYCHE (Histone H4 OS=Pycnopodia helianthoides PE=3 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.667e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 367
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRT 97
The following BLAST results are available for this feature:
BLAST of CX296759 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_ASEAQ5.374e-3597.37Histone H4 OS=Asellus aquaticus GN=His4 PE=3 SV=2[more]
H4_ACRAS5.374e-3597.37Histone H4 OS=Acrolepiopsis assectella GN=His4 PE=... [more]
H4_DENKL7.019e-3596.05Histone H4 OS=Dendronephthya klunzingeri GN=H4DEKL... [more]
H4_ACRFO7.019e-3596.05Histone H4 OS=Acropora formosa PE=3 SV=2[more]
H43_MAIZE9.167e-3598.68Histone H4.3 OS=Zea mays GN=H4 PE=1 SV=3[more]
H4_STYPL1.197e-3496.05Histone H4 OS=Styela plicata PE=3 SV=3[more]
H4_PYRSA1.197e-3497.37Histone H4 OS=Pyrenomonas salina PE=3 SV=3[more]
H4_OIKDI1.197e-3496.05Histone H4 OS=Oikopleura dioica GN=H4.1 PE=3 SV=3[more]
H4_STRPU2.667e-3496.05Histone H4 OS=Strongylocentrotus purpuratus PE=3 S... [more]
H4_PYCHE2.667e-3496.05Histone H4 OS=Pycnopodia helianthoides PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC05802E04SK FerrChloL1 Citrus clementina cDNA clone C05802E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296759 ID=CX296759; Name=CX296759; organism=Citrus clementina; type=EST; length=638bp
CGAGGAGTGCCGGAAAAAGAAAGAAAATTCCCAATTAGTTTGAAAACCGT
AATTAGCATTTTAATTTCGTAGCAGAATGTCTGGACGCGGCAAGGGAGGC
AAGGGATTGGGGAAGGGAGGAGCCAAGAGGCATCGCAAGGTGTTGCGTGA
TAACATTCAGGGCATCACCAAGCCGGCTATTCGCCGTTTGGCCAGAAGAG
GAGGCGTTAAGAGAATCAGCGGTCTCATCTACGAGGAGACACGCGGCGTC
CTCAAGATCTTCTTGGAGAACGTCATTCGCGATGCTGTGACCTACACTGA
GCACGCTCGCCGAAAGACGGTGACCGCCATGGATGTCGTTTATGCGCTCA
AGAGGCAGGGCAGGACTCTCTATGGCTTTGGTGGTTGATGTGGCGTCGTT
TTGTATTTTGTGTTTTAGGGTTTTCCTTTTTTCCTGTAAACCAGTGAACG
TGGTTGTGTCTAGCGAGTGGGTTTAAATTGGAGGCAACTTGTATTTGCCG
TTTCCTAGGGGTTTTTTTATTTTTTTGGTTCATTGGTGTTTTCATCTTTT
GCAATGAGAATCTAGATGTTTGCTAAAACCTCGTGCCGAATTCGGCACGA
GGCCTCGTGCCGAATTCGGCACGAAGGGGGGGCCCGGT
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