CX296759

Overview
NameCX296759
Unique NameCX296759
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length638
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX296759 vs. ExPASy Swiss-Prot
Match: H4_PSAMI (Histone H4 OS=Psammechinus miliaris PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.667e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 367
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of CX296759 vs. ExPASy Swiss-Prot
Match: H4_PISOC (Histone H4 OS=Pisaster ochraceus PE=3 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.667e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 367
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of CX296759 vs. ExPASy Swiss-Prot
Match: H4_PISBR (Histone H4 OS=Pisaster brevispinus PE=3 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.667e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 367
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of CX296759 vs. ExPASy Swiss-Prot
Match: H4_PARLI (Histone H4 OS=Paracentrotus lividus PE=3 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.667e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 367
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of CX296759 vs. ExPASy Swiss-Prot
Match: H4_LYTPI (Histone H4 OS=Lytechinus pictus PE=3 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.667e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 367
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of CX296759 vs. ExPASy Swiss-Prot
Match: H4_HOLTU (Histone H4 OS=Holothuria tubulosa PE=3 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.667e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 367
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of CX296759 vs. ExPASy Swiss-Prot
Match: H4_CAEEL (Histone H4 OS=Caenorhabditis elegans GN=his-1 PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.667e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 367
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of CX296759 vs. ExPASy Swiss-Prot
Match: H4_APLCA (Histone H4 OS=Aplysia californica GN=His.H4 PE=3 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 4.550e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 367
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+ KTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKCKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of CX296759 vs. ExPASy Swiss-Prot
Match: H48_CHICK (Histone H4 type VIII OS=Gallus gallus GN=H4-VIII PE=3 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 4.550e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 367
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQ RT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQERT 97
[Close]
BLAST of CX296759 vs. ExPASy Swiss-Prot
Match: H4_SOLST (Histone H4 OS=Solaster stimpsoni PE=3 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 5.942e-34
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 367
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVT+MDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTSMDVVYALKRQGRT 97
The following BLAST results are available for this feature:
BLAST of CX296759 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_PSAMI2.667e-3496.05Histone H4 OS=Psammechinus miliaris PE=1 SV=2[more]
H4_PISOC2.667e-3496.05Histone H4 OS=Pisaster ochraceus PE=3 SV=2[more]
H4_PISBR2.667e-3496.05Histone H4 OS=Pisaster brevispinus PE=3 SV=2[more]
H4_PARLI2.667e-3496.05Histone H4 OS=Paracentrotus lividus PE=3 SV=2[more]
H4_LYTPI2.667e-3496.05Histone H4 OS=Lytechinus pictus PE=3 SV=2[more]
H4_HOLTU2.667e-3496.05Histone H4 OS=Holothuria tubulosa PE=3 SV=2[more]
H4_CAEEL2.667e-3496.05Histone H4 OS=Caenorhabditis elegans GN=his-1 PE=1... [more]
H4_APLCA4.550e-3496.05Histone H4 OS=Aplysia californica GN=His.H4 PE=3 S... [more]
H48_CHICK4.550e-3496.05Histone H4 type VIII OS=Gallus gallus GN=H4-VIII P... [more]
H4_SOLST5.942e-3494.74Histone H4 OS=Solaster stimpsoni PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC05802E04SK FerrChloL1 Citrus clementina cDNA clone C05802E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296759 ID=CX296759; Name=CX296759; organism=Citrus clementina; type=EST; length=638bp
CGAGGAGTGCCGGAAAAAGAAAGAAAATTCCCAATTAGTTTGAAAACCGT
AATTAGCATTTTAATTTCGTAGCAGAATGTCTGGACGCGGCAAGGGAGGC
AAGGGATTGGGGAAGGGAGGAGCCAAGAGGCATCGCAAGGTGTTGCGTGA
TAACATTCAGGGCATCACCAAGCCGGCTATTCGCCGTTTGGCCAGAAGAG
GAGGCGTTAAGAGAATCAGCGGTCTCATCTACGAGGAGACACGCGGCGTC
CTCAAGATCTTCTTGGAGAACGTCATTCGCGATGCTGTGACCTACACTGA
GCACGCTCGCCGAAAGACGGTGACCGCCATGGATGTCGTTTATGCGCTCA
AGAGGCAGGGCAGGACTCTCTATGGCTTTGGTGGTTGATGTGGCGTCGTT
TTGTATTTTGTGTTTTAGGGTTTTCCTTTTTTCCTGTAAACCAGTGAACG
TGGTTGTGTCTAGCGAGTGGGTTTAAATTGGAGGCAACTTGTATTTGCCG
TTTCCTAGGGGTTTTTTTATTTTTTTGGTTCATTGGTGTTTTCATCTTTT
GCAATGAGAATCTAGATGTTTGCTAAAACCTCGTGCCGAATTCGGCACGA
GGCCTCGTGCCGAATTCGGCACGAAGGGGGGGCCCGGT
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